| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF018N22 | Sequence | 490 | 003244 (7) | ref|NP_001234632.1| | 8e-05 | abscisic stress-ripening protein 1 [Solanum lycopersicum] sp|Q08655.1|ASR1_SOLLC | 464 | 003244 (7) | emb|CBY16500.1| | 2e-06 | ASR5 protein [Solanum chilense] |
| JMFF039G16 | Sequence | 621 | 003244 (7) | gb|AAD00254.1| | 2e-04 | cold inducible; similar to other osmotic stress induced gene products including | 532 | 003244 (7) | ref|XP_007152016.1| | 6e-04 | hypothetical protein PHAVU_004G094600g [Phaseolus vulgaris] gb|ESW24010.1| hypot |
| JMFN035G10 | Sequence | 630 | 003244 (7) | gb|AAD00254.1| | 3e-04 | cold inducible; similar to other osmotic stress induced gene products including | |||||
| JMFN045G05 | Sequence | 522 | 003244 (7) | gb|AAD00254.1| | 1e-04 | cold inducible; similar to other osmotic stress induced gene products including | |||||
| JMFS038F12 | Sequence | 491 | 003244 (7) | ref|NP_001234632.1| | 4e-05 | abscisic stress-ripening protein 1 [Solanum lycopersicum] sp|Q08655.1|ASR1_SOLLC | |||||
This contig is upended
. : . : . : . : . : . :
JMFF018N22+ TAATTCAAGTA
JMFS038F12+ A
____________________________________________________________
consensus TAATTCAAGTA
. : . : . : . : . : . :
JMFF018N22+ AATAAACACCACTCTATTGATTATACATAAGTTCACTCACACTGACACACATATTATTGC
rJMFF018N22- TTGATTATACATAAGTTCACTCACACTGACACACATATTATTGC
JMFS038F12+ AATAAACACCACTCTATTGATTATACATAAGTTCACTCACACTGACACACATATTATTGC
____________________________________________________________
consensus AATAAACACCACTCTATTGATTATACATAAGTTCACTCACACTGACACACATATTATTGC
. : . : . : . : . : . :
JMFF018N22+ AAACAAGATAGTAGCCCATATATATAATATGATATGATATGATATGATGGCATTATTTAG
rJMFF018N22- AAACAAGATAGTAGCCCATATATATAATATGATATGATATGATATGATGGCATTATTTAG
rJMFF039G16- ATATGATATGATGGCATTATTTAG
JMFS038F12+ AAACAAGATAGTAGCCCATATATATAATATGATATGATATGATATGATGGCATTATTTAG
JMFN035G10+ ATATGATATGATGGCATTATTTAG
JMFN045G05+ AGATTGTAGCCCATATATATTATTTGATAAGATATGATATGATGGCATTATTTAG
JMFF039G16+ ATATGATATGATGGCATTATTTAG
____________________________________________________________
consensus AAACAAGATAGTAGCCCATATATATAATATGATATGATATGATATGATGGCATTATTTAG
. : . : . : . : . : . :
JMFF018N22+ CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
rJMFF018N22- CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
rJMFF039G16- CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
JMFS038F12+ CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
JMFN035G10+ CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
JMFN045G05+ CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
JMFF039G16+ CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
____________________________________________________________
consensus CAATATTCAGCAAATAATTAGTAAATTATTAATTAGAAATGGTGGTGGTGCTTTCCGTCG
. : . : . : . : . : . :
JMFF018N22+ TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
rJMFF018N22- TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
rJMFF039G16- TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
JMFS038F12+ TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
JMFN035G10+ TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
JMFN045G05+ TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
JMFF039G16+ TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
____________________________________________________________
consensus TGCTCTTTTTCTTCCTTCTTGGCTTCTTTCTTCTCATGATGCTCATGGAATGCAAATCCA
. : . : . : . : . : . :
JMFF018N22+ CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
rJMFF018N22- CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
rJMFF039G16- CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
JMFS038F12+ CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
JMFN035G10+ CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
JMFN045G05+ CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
JMFF039G16+ CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
____________________________________________________________
consensus CCTGCTCCCACTGCCACGGCTGCTGCAACCTCTTCCTCTATCTTGTGCCTCTGTCCATGC
. : . : . : . : . : . :
JMFF018N22+ TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCTGCAGCAACG
rJMFF018N22- TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCTGCAGCAACG
rJMFF039G16- TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCTGCAGCAACG
JMFS038F12+ TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCTGCAGCAACG
JMFN035G10+ TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCTGCAGCAACG
JMFN045G05+ TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCAGCAGCAACG
JMFF039G16+ TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCTGCAGCAACG
____________________________________________________________
consensus TCTGTGTCTTTCTTTGCTTCATGCTTCTCATGCAAAGCATAGGCTCCGGCTGCAGCAACG
. : . : . : . : . : . :
JMFF018N22+ CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
rJMFF018N22- CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
rJMFF039G16- CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
JMFS038F12+ CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
JMFN035G10+ CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
JMFN045G05+ CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
JMFF039G16+ CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
____________________________________________________________
consensus CCGAGCTCGCCGATGTGCTCGAGGTGTTTGTGGTGTTTCTCTTCTTTCTTGTAGTCCACC
. : . : . : . : . : . :
JMFF018N22+ GGGCCGTCTTCCTCCTTCTTGTGGTGGAAGAGGT-GGTGGTGGTGTTTCTCCTCAGCCAT
rJMFF018N22- GGGCCGTCTTCCTCCTTCTTGTGGTGGAAGAGGTGGGTGGTGGTGTTTCTCCTCAGCCAT
rJMFF039G16- GGGTCGTCTTCCTCCTTCTTGTGGTGGAANAGGT-GGTGGTGGTGTNTCTCCTCNGCCAT
JMFS038F12+ GGGCCGTCTTCCTCCTTCTTGTGGTGGAAGAGGT-GGTGGTGGTGTTTCTCCTCAGCCAT
JMFN035G10+ GGGCCGTCTTCCTCCTTCTTGTGGTGGAAGAGGT-GGTGGTGGTGTTTCTCCTCAGCCAT
JMFN045G05+ GGGCCGTCTTCCTCCTTCTTGTGGTGGAAGAGGT-GGTGGTGGTGTTTCTCCTCAGCCAT
JMFF039G16+ GGGCCGTCTTCCTCCTTCTTGTGGTGGAAGAGGT-GGTGGTGGTGTTTCTCCTCAGCCAT
____________________________________________________________
consensus GGGCCGTCTTCCTCCTTCTTGTGGTGGAAGAGGT-GGTGGTGGTGTTTCTCCTCAGCCAT
. : . : . : . : . : . :
JMFS038F12+ GCTGGA
JMFN035G10+ GCTGG-ACTAATCAAATGCTACCGGAGTATATATGAAGAA
JMFN045G05+ GCTGGAACTAATCAAATGCTACCGGAGTATATATGAAGAAGGTGATT
JMFF039G16+ GCTGGAACTAATCAAATGCTACCGGAGTATATATGAAGAAGGTGATTGTGATGATGGTGC
____________________________________________________________
consensus GCTGGAACTAATCAAATGCTACCGGAGTATATATGAAGAAGGTGATTGTGATGATGGTGC