Contig 003231:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF036L18Sequence574003231 (2)ref|XP_009631399.1|5e-27PREDICTED: vacuolar protein-sorting protein bro1-like [Nicotiana tomentosiformi629008281 (2)
JMSF009F20Sequence387003231 (2)ref|XP_009631399.1|6e-06PREDICTED: vacuolar protein-sorting protein bro1-like [Nicotiana tomentosiformi697008281 (2)ref|XP_004249109.1|2e-05PREDICTED: vacuolar protein-sorting protein bro1-like [Solanum lycopersicum]

Alignment

This contig is upended


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JMFF036L18+                                     GTGTTCAATCCGGGTGAAGTTTCAAAAGATATTA
                      ____________________________________________________________
consensus                                       GTGTTCAATCCGGGTGAAGTTTCAAAAGATATTA
 
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JMFF036L18+           TATCGACTTTTGTCTGAGCAACATTTATTTCATCAAAGATATCATCTTCAAGTTGCAAGA
                      ____________________________________________________________
consensus             TATCGACTTTTGTCTGAGCAACATTTATTTCATCAAAGATATCATCTTCAAGTTGCAAGA
 
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JMSF009F20+                                                                     AC
JMFF036L18+           TATAATCTTCCAAGAACCAGTCTGGTTTATCGAGCATGAACCTAGCTACTATGTCATAAC
                      ____________________________________________________________
consensus             TATAATCTTCCAAGAACCAGTCTGGTTTATCGAGCATGAACCTAGCTACTATGTCATAAC
 
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JMSF009F20+           CTCCAAATCTGGAATCGGGATCCGGAGGCTCAGGATTTGGAGAGTGGAAGAATGGGAGCA
JMFF036L18+           CTCCAAATCTGGAATCGGGATCCGGAGGCTCAGGATTTGGAGAGTGGAAGAATGGGAGCA
                      ____________________________________________________________
consensus             CTCCAAATCTGGAATCGGGATCCGGAGGCTCAGGATTTGGAGAGTGGAAGAATGGGAGCA
 
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JMSF009F20+           AGAAGAGGGCAGAGAGAAAGACGGCCAGAGCAAGCAGAAGAGCAAACACACATCTGAAGC
JMFF036L18+           AGAAGAGGGCAGAGAGAAAGACGGCCAGAGCAAGCAGAAGAGCAAACACACATCTGAAGC
                      ____________________________________________________________
consensus             AGAAGAGGGCAGAGAGAAAGACGGCCAGAGCAAGCAGAAGAGCAAACACACATCTGAAGC
 
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JMSF009F20+           TCACCCACAGCCTGAATCTGCTGCAGCATCTATTGTTGGCTGCATTCGACCCCGTGCCCT
JMFF036L18+           TCACCCACAGCCTGAATCTGCTGCAGCATCTATTGTTGGCTGCATTCGACCCCGTGCCCT
                      ____________________________________________________________
consensus             TCACCCACAGCCTGAATCTGCTGCAGCATCTATTGTTGGCTGCATTCGACCCCGTGCCCT
 
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JMSF009F20+           GCTGACCCACTGCTGCTGTCGGCAATGACTGCTCTTCATCTACCTTCCCCATTGGGAGGA
JMFF036L18+           GCTGACCCACTGCTGCTGTCGGCAATGACTGCTCTTCATCTACCTTCCCCATTGGGAGGA
                      ____________________________________________________________
consensus             GCTGACCCACTGCTGCTGTCGGCAATGACTGCTCTTCATCTACCTTCCCCATTGGGAGGA
 
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JMSF009F20+           ACAGTTGTAATGGTAATAGCAGCAATGCGGGTTTTTGTTAGTCTCCATAGCTGTTGTGGT
JMFF036L18+           ACAGTTGTAATGGTAATAGCAGCAATGCGGGTTTTTGTTAGTCTCCATAGCTGTTGTGGT
                      ____________________________________________________________
consensus             ACAGTTGTAATGGTAATAGCAGCAATGCGGGTTTTTGTTAGTCTCCATAGCTGTTGTGGT
 
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JMSF009F20+           TTGGTGAGAGAGTCTCCATCCCCATGCCTATCTTCTCGACCCTTC               
JMFF036L18+           TTGGTGAGAGAGTCTCCATCCCCATGCCTATCTTCTCGACCCTTCCTTCTCTTTCCCTTT
                      ____________________________________________________________
consensus             TTGGTGAGAGAGTCTCCATCCCCATGCCTATCTTCTCGACCCTTCCTTCTCTTTCCCTTT
 
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JMFF036L18+           TGCCCTTTTGTGTGTTGGGAGAGAGAGGGGAAAAAAGGCTTTTCTTGGTGAGAAACTAAG
                      ____________________________________________________________
consensus             TGCCCTTTTGTGTGTTGGGAGAGAGAGGGGAAAAAAGGCTTTTCTTGGTGAGAAACTAAG