clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF033P01 | Sequence | 488 | 003221 (7) | ref|XP_009762782.1| | 2e-51 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [ | 755 | 004259 (4) | ref|XP_010314247.1| | 7e-60 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X3 [ |
JMFS006F07 | Sequence | 554 | 003221 (7) | ref|XP_009762781.1| | 7e-66 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [ | |||||
JMFS042A09 | Sequence | 608 | 003221 (7) | ref|XP_009762781.1| | 1e-87 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [ | |||||
JMFS049H07 | Sequence | 606 | 003221 (7) | ref|XP_009762781.1| | 6e-78 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [ | |||||
JMFS092B03 | Sequence | 616 | 003221 (7) | ref|XP_009762781.1| | 1e-85 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [ | |||||
JMSF018I11 | Sequence | 489 | 003221 (7) | ref|XP_009762781.1| | 2e-52 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [ | 744 | 004259 (4) | ref|XP_006349272.1| | 5e-54 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3-like [Solanu |
JMSF021P07 | Sequence | 695 | 003221 (7) | ref|XP_009762781.1| | 5e-92 | PREDICTED: squamous cell carcinoma antigen recognized by T-cells 3 isoform X2 [ | 690 | 004259 (4) | ref|XP_002527822.1| | 4e-44 | Squamous cell carcinoma antigen recognized by T-cells, putative [Ricinus commun |
This contig is upended
. : . : . : . : . : . :
JMFS042A09+ GCTTGTTCA
JMSF021P07+ GTGATCAGTTCCATCAATTGTGATGAGAATGGCTTGTTCA
____________________________________________________________
consensus GTGATCAGTTCCATCAATTGTGATGAGAATGGCTTGTTCA
. : . : . : . : . : . :
JMFS092B03+ GTCCCTGTATAATTCCCATATCCGGCCACCCTCAGCAACATGCAAACCAGCGGCAGTA
JMFS042A09+ AAGTCCCTGTATAATTCCCATATCCGGCCACCTTCAGCAACATGCAAACCAGCGGCAGTA
JMFS049H07+ CAGCAACATGCAAACCAGCGGCAGTA
JMSF021P07+ AAGTCCCTGTATAATTCCCATATCCGGCCACCTTCAGCAACATGCAAACCAGCGGCAGTA
____________________________________________________________
consensus AAGTCCCTGTATAATTCCCATATCCGGCCACCTTCAGCAACATGCAAACCAGCGGCAGTA
. : . : . : . : . : . :
JMFS092B03+ AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
JMFS042A09+ AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
JMFS049H07+ AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
JMFS006F07+ GATATACCATCTATAGAACATGAACTAACT
JMSF021P07+ AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
____________________________________________________________
consensus AGGGCACGCTCAAAGAGATTTCTTGCCTTTGATATACCATCTATAGAACATGAACTAACT
. : . : . : . : . : . :
JMFS092B03+ GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFS042A09+ GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFS049H07+ GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFS006F07+ GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMSF018I11+ AACCACAGACAGATAA
JMSF021P07+ GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
JMFF033P01+ ACAGATAA
____________________________________________________________
consensus GATGGGTCATGCTCTTGAACATAATTTAAGTAGTCACACCATAAAACCACAGACAGATAA
. : . : . : . : . : . :
JMFS092B03+ TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFS042A09+ TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFS049H07+ TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFS006F07+ TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMSF018I11+ TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMSF021P07+ TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
JMFF033P01+ TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
____________________________________________________________
consensus TCAGACACTCCACGCTCATATAACTTTTCAATAGCAGGGAAAGCCTCAGGTCCAGAGCTA
. : . : . : . : . : . :
JMFS092B03+ AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFS042A09+ AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFS049H07+ AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFS006F07+ AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMSF018I11+ AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMSF021P07+ AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
JMFF033P01+ AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
____________________________________________________________
consensus AGAGACATCTCATCTTTAATCCACTCCTTCCACATCTCGGAACTCAGTGGAAATATGGCA
. : . : . : . : . : . :
JMFS092B03+ CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFS042A09+ CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFS049H07+ CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFS006F07+ CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMSF018I11+ CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMSF021P07+ CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
JMFF033P01+ CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
____________________________________________________________
consensus CTCATAGCTTCCCTAGCTATTCTTAGCTTCTCTATGTCTCCCTGCTTCCTCAGGGATTTA
. : . : . : . : . : . :
JMFS092B03+ ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFS042A09+ ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFS049H07+ ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFS006F07+ ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMSF018I11+ ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMSF021P07+ ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
JMFF033P01+ ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
____________________________________________________________
consensus ATATATTGGACATGAGCATCGTAATTAGAGGGGTTGCTGGAGAGCTCAGTTTCGAGAGCT
. : . : . : . : . : . :
JMFS092B03+ TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFS042A09+ TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFS049H07+ TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFS006F07+ TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMSF018I11+ TGAATTTCGAGATTCTGTTNAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMSF021P07+ TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
JMFF033P01+ TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
____________________________________________________________
consensus TGAATTTCGAGATTCTGTTTAGCGTCGTCATCAGAGTCAGACTCTGTGTCGGAGTCGGAC
. : . : . : . : . : . :
JMFS092B03+ CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFS042A09+ CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFS049H07+ CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFS006F07+ CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMSF018I11+ CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMSF021P07+ CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
JMFF033P01+ CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
____________________________________________________________
consensus CGGGGCACCTTGTTCGAGTTAGGGGCATCGGTCATGAGTTGGTCTTCGTTATCCTCGGTA
. : . : . : . : . : . :
JMFS092B03+ GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMFS042A09+ GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTC
JMFS049H07+ GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMFS006F07+ GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMSF018I11+ GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMSF021P07+ GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
JMFF033P01+ GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
____________________________________________________________
consensus GCATCTTCGGAGATTTGAGGTGCTTGGGGAGAGGAATCTAGGGTTTCAGTCGGGGTTTCC
. : . : . : . : . : . :
JMFS092B03+ GCCATGGTTTTTGGGGGT
JMFS049H07+ GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAG
JMFS006F07+ GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTA
JMSF018I11+ GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACAC
JMSF021P07+ GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACAC
JMFF033P01+ GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACACACTGCAGAG
____________________________________________________________
consensus GCCATGGTTTTTGGGGGTGCGCCGCAGAGTCGCAAACCAGCTTACAGACACACTGCAGAG