| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003H03 | Sequence | 535 | 003212 (11) | ref|XP_008441056.1| | 1e-45 | PREDICTED: ATP synthase gamma chain, chloroplastic [Cucumis melo] gb|ADN34052.1| | 693 | 003212 (11) | ref|XP_006348117.1| | 5e-116 | PREDICTED: ATP synthase gamma chain, chloroplastic-like [Solanum tuberosum] |
| JMFF011J18 | Sequence | 534 | 003212 (11) | ref|XP_008441056.1| | 3e-45 | PREDICTED: ATP synthase gamma chain, chloroplastic [Cucumis melo] gb|ADN34052.1| | 729 | 003212 (11) | ref|XP_006348117.1| | 4e-123 | PREDICTED: ATP synthase gamma chain, chloroplastic-like [Solanum tuberosum] |
| JMFF032F22 | Sequence | 441 | 003212 (11) | ref|XP_008441056.1| | 2e-26 | PREDICTED: ATP synthase gamma chain, chloroplastic [Cucumis melo] gb|ADN34052.1| | 728 | 003212 (11) | ref|XP_006348117.1| | 7e-134 | PREDICTED: ATP synthase gamma chain, chloroplastic-like [Solanum tuberosum] |
| JMFF043A04 | Sequence | 340 | 023759 | 508 | 003212 (11) | gb|EYU27788.1| | 1e-35 | hypothetical protein MIMGU_mgv1a008380mg [Erythranthe guttata] | |||
| JMFN008N20 | Sequence | 619 | 003212 (11) | emb|CDP04403.1| | 2e-73 | unnamed protein product [Coffea canephora] | |||||
| JMFN014E02 | Sequence | 627 | 003212 (11) | ref|XP_006348117.1| | 4e-126 | PREDICTED: ATP synthase gamma chain, chloroplastic-like [Solanum tuberosum] | |||||
| JMFN036B01 | Sequence | 545 | 003212 (11) | gb|ACN36803.1| | 2e-39 | unknown [Zea mays] | |||||
| JMFS133A07 | Sequence | 603 | 003212 (11) | ref|XP_010057920.1| | 7e-85 | PREDICTED: ATP synthase gamma chain, chloroplastic [Eucalyptus grandis] gb|KCW7 | |||||
This contig is upended
. : . : . : . : . : . :
JMFN036B01+ TCTTGGGGACTTGACTTTCATTATTACATGTTTTACAAATACAAGGTAAAAGATCTGG
____________________________________________________________
consensus TCTTGGGGACTTGACTTTCATTATTACATGTTTTACAAATACAAGGTAAAAGATCTGG
. : . : . : . : . : . :
JMFN036B01+ ACATATAAAGATCAGATGAGTGGTCTGGCCTTATATATCATAATCATTCAATACATACAT
____________________________________________________________
consensus ACATATAAAGATCAGATGAGTGGTCTGGCCTTATATATCATAATCATTCAATACATACAT
. : . : . : . : . : . :
JMFN036B01+ CTAGCAAAAATCAAAGTTTATTTGTATGAAATGCAGAAGAAATTATCTACTCTGATCTGA
rJMFF043A04- AAATTATCTACTCTGATCGGA
____________________________________________________________
consensus CTAGCAAAAATCAAAGTTTATTTGTATGAAATGCAGAAGAAATTATCTACTCTGATCTGA
. : . : . : . : . : . :
JMFN036B01+ ATCACAGTTCTTGAACAAGAGCATCAAAACGAAGCATGAATCTCCCATAAACACAACTAT
rJMFF043A04- ATCCCAATTCTTGAACCAGAGCGTCAGGACGAATCATGAATCTCCCGTAAACACAAATAT
rJMFF003H03- TTCTTGAACAAGAGCATCAAAACGAAGCATGAATCTCCCATAAACACAACTAT
rJMFF011J18- TTCTTGAACAAGAGCATCAAAACGAAGCATGAATCTCCCATAAACACAACTAT
rJMFF032F22- TAAACACAACTAT
____________________________________________________________
consensus ATCCCAGTTCTTGAACAAGAGCATCAAAACGAAGCATGAATCTCCCATAAACACAACTAT
. : . : . : . : . : . :
JMFN036B01+ ATATAAGCATATATAATGAAGGGGGGGAAAAACAAGGAGGATTTATATAATTATATATGC
rJMFF043A04- ATATGAGCATATATAGTGAAGGGGGGGAGAAACGAGGACGATTTATATAATTATATATGC
rJMFF003H03- ATATAAGCATATATAATGAAGGGGGGGAAAAACAAGGAGGATTTATATAATTATATATGC
rJMFF011J18- ATATAAGCATATATAATGAAGGGGGGGAAAAACAAGGAGGATTTATATAATTATATATGC
JMFN014E02+ TATAATTATATATGC
rJMFF032F22- ATATAAGCATATATAATGAAGGGGGGGAAAAACAAGGAGGATTTATATAATTATATATGC
____________________________________________________________
consensus ATATAAGCATATATAATGAAGGGGGGGAAAAACAAGGAGGATTTATATAATTATATATGC
. : . : . : . : . : . :
JMFN036B01+ ATGCATGCTTAAGACAAGGCATTGGCTCCAGCAACAATCTCCAAGATTTCTCCGGTAATC
rJMFF043A04- ATGCATGCTTAAAACCAGGCATTGGCTCCAGCAACCATCTACAAGATTTCTCCGGTAATC
rJMFF003H03- ATGCATGCTTAAGACAAGGCATTGGCTCCAGCAACAATCTCCAAGATTTCTCCGGTAATC
rJMFF011J18- ATGCATGCTTAAGACAAGGCATTGGCTCCAGCAACAATCTCCAAGATTTCTCCGGTAATC
JMFN014E02+ ATGCATGCTTAAGACAAGGCATTGGCTCCAGCAACAATCTCCAAGATTTCTCCGGTAATC
rJMFF032F22- ATGCATGCTTAAGACAAGGCATTGGCTCCAGCAACAATCTCCAAGATTTCTCCGGTAATC
____________________________________________________________
consensus ATGCATGCTTAAGACAAGGCATTGGCTCCAGCAACAATCTCCAAGATTTCTCCGGTAATC
. : . : . : . : . : . :
JMFN036B01+ TTCGCCTGACGCTGTCTGTTGTAAGCTGTAGACAGGTTCTTCCTCAACTCTTTAGCGTTG
rJMFF043A04- TTCGCCTGACGCTGCCTGTAGTAAGGTGGACACAGGTTCTTCATCTGCTCTTTAGCGCTG
rJMFF003H03- TTCGCCTGACGCTGTCTGTTGTAAGCTGTAGACAGGTTCTTCCTCAACTCTTTAGCGTTG
rJMFF011J18- TTCGCCTGACGCTGTCTGTTGTAAGCTGTAGACAGGTTCTTCCTCAACTCTTTAGCGTTG
JMFN014E02+ TTCGCCTGACGCTGTCTGTTGTAAGCTGTAGACAGGTTCTTCCTCAACTCTTTAGCGTTG
rJMFF032F22- TTCGCCTGACGCTGTCTGTTGTAAGCTGTAGACAGGTTCTTCCTCAACTCTTTANCGTTG
____________________________________________________________
consensus TTCGCCTGACGCTGTCTGTTGTAAGCTGTAGACAGGTTCTTCCTCAACTCTTTAGCGTTG
. : . : . : . : . : . :
JMFN036B01+ TCGGTGGCATTGCTCATCGCACTCATCCTGGAAGCCAGCTCGCTGGCTAGTGATTCCTGC
rJMFF043A04- TCGGTGGAATTGCTCATCGGACTCATCCTGAAACCCAGCTCGATGGGTAGTGATTCCCGC
rJMFF003H03- TCGGTGGCATTGCTCATCGCACTCATCCTGGAAGCCAGCTCGCTGGCTAGTGATTCCTGC
rJMFF011J18- TCGGTGGCATTGCTCATCGCACTCATCCTGGAAGCCAGCTCGCTGGCTAGTGATTCCTGC
JMFN014E02+ TCGGTGGCATTGCTCATCGCACTCATCCTGGAAGCCAGCTCGCTGGCTAGTGATTCCTGC
rJMFF032F22- TCGGTGGCATTGCTCATCGCACTCATCCTGGAAGCCAGCTCGCTGGCTAGTGATTCCTGC
____________________________________________________________
consensus TCGGTGGCATTGCTCATCGCACTCATCCTGGAAGCCAGCTCGCTGGCTAGTGATTCCTGC
. : . : . : . : . : . :
JMFN036B01+ AAAGCTCTCAGAATCTGACTGTTCAAGTAGAGAGGCAACAGGGCGTCCAGAATCTGAACT
rJMFF043A04- CAAGCTCTCGGAATCTGACTGTTCGAGTACAAAAGTAACAGGGCGTTCAGAATCTGAACT
rJMFF003H03- AAAGCTCTCAGAATCTGACTGTTCAAGTAGAGAGGCAACAGGGCGTCCAGAATCTGAACT
rJMFF011J18- AAAGCTCTCAGAATCTGACTGTTCAAGTAGAGAGGCAACAGGGCGTCCAGAATCTGAACT
JMFN014E02+ AAAGCTCTCAGAATCTGACTGTTCAAGTAGAGAGGCAACAGGGCGTCCAGAATCTGAACT
rJMFF032F22- AAAGCTCTCAGAATCTGACTGTTCAAGTAGAGAGGCAACAGGGCGTCCAGAATCTGAACT
____________________________________________________________
consensus AAAGCTCTCAGAATCTGACTGTTCAAGTAGAGAGGCAACAGGGCGTCCAGAATCTGAACT
. : . : . : . : . : . :
JMFN036B01+ GGGTCCT
rJMFF043A04- GGGTGCTGCTCGAACTCCAAGATTGATGAGAATTCTGGGGAATTAGTCCTTCTGACGTCT
rJMFF003H03- GGGTCCTGCTCGAACTCCAAGATTGATGAGAATTCTGGGGTTTCAGTCCTTCTCACGTCT
rJMFF011J18- GGGTCCTGCTCGAACTCCAAGATTGATGAGAATTCTGGGGTTTCAGTCCTTCTCACGTCT
JMFN014E02+ GGGTCCTGCTCGAACTCCAAGATTGATGAGAATTCTGGGGTTTCAGTCCTTCTCACGTCT
rJMFF032F22- GGGTCCTGCTCGAACTCCAAGATTGATGAGAATTCTGGGGTTTCAGTCCTTCTCACGTCT
____________________________________________________________
consensus GGGTCCTGCTCGAACTCCAAGATTGATGAGAATTCTGGGGTTTCAGTCCTTCTCACGTCT
. : . : . : . : . : . :
rJMFF043A04- CTCTCCACCGATAGCTTCCCTTCTTTGGACGTCA
rJMFF003H03- CTCTCCACCGTCAGTTTCCCTTCTTTGGTCGTCAGCCTGAAGAACTCGTCTTCTGCTGCG
rJMFF011J18- CTCTCCACCGTCAGTTTCCCTTCTTTGGTCGTCAGCCTGAAGAACTCGTCTTCTGCTGCG
JMFN014E02+ CTCTCCACCGTCAGTTTCCCTTCTTTGGTCGTCAGCCTGAAGAACTCGTCTTCTGCTGCG
rJMFF032F22- CTCTCCACCGTCAGTTTCCCTTCTTTGGTCGTCAGCCTGAAGAACTCGTCTTCTGCTGCG
____________________________________________________________
consensus CTCTCCACCGTCAGTTTCCCTTCTTTGGTCGTCAGCCTGAAGAACTCGTCTTCTGCTGCG
. : . : . : . : . : . :
rJMFF003H03- TCGACACAGTTGCCGTTTATGTCGCAGATCTCTCCCTTTGGGGATAGGGGGACTAAGGTG
rJMFF011J18- TCGACACAGTTGCCGTTTATGTCGCAGATCTCTCCCTTTGGGGATAGGGGGACTAAGGTG
JMFN014E02+ TCGACACAGTTGCCGTTTATGTCGCAGATCTCTCCCTTTGGGGATAGGGGGACTAAGGTG
rJMFF032F22- TCGACACAGTTGCCGTTTATGTCGCAGATCTCTCCCTTTGGGGATAGGGGGACTAAGGTG
____________________________________________________________
consensus TCGACACAGTTGCCGTTTATGTCGCAGATCTCTCCCTTTGGGGATAGGGGGACTAAGGTG
. : . : . : . : . : . :
rJMFF003H03- TGAATCACGGGCTCGGATTTGACTAAAGACACGAACTTTGTGTACAAAAGCTCGACTTTA
rJMFF011J18- TGAATCACGGGCTCGGATTTGACTAAAGACACGAACTTTGTGTACAAAAGCTCGACTTTA
JMFN014E02+ TGAATCACGGGCTCGGATTTGACTAAAGACACGAACTTTGTGTACAAAAGCTCGACTTTA
rJMFF032F22- TGAATCACGGGCTCGGATTTGACTAAAGACACGAACTTTGTGTACAAAAGCTCGACTTTA
____________________________________________________________
consensus TGAATCACGGGCTCGGATTTGACTAAAGACACGAACTTTGTGTACAAAAGCTCGACTTTA
. : . : . : . : . : . :
rJMFF003H03- TCGACCTCTTCGCTCACGAAGAGGGAAAAGACATCATCGGCGATTGCCTGGGCGTCTTTT
rJMFF011J18- TCGACCTCTTCGCTCACGAAGAGGGAAAAGACATCATCGGCGATTGCCTGGGCGTCTTTT
JMFN014E02+ TCGACCTCTTCGCTCACGAAGAGGGAAAAGACATCATCGGCGATTGCCTGGGCGTCTTTT
rJMFF032F22- TCGACCTCTTCGCTCACGAAGAGGGAAAAGACATCATCGGCGATTGCCTGGGCGTCTTTT
JMFS133A07+ AGGGAAAAGACATCATCGGCGATGCCTGGGGCGTCTTTT
____________________________________________________________
consensus TCGACCTCTTCGCTCACGAAGAGGGAAAAGACATCATCGGCGATTGCCTGGGCGTCTTTT
. : . : . : . : . : . :
rJMFF003H03- GCGGTTGGGANAGTGCTGCCGTCGAGGAATCTGTCGACG
rJMFF011J18- GCGGTTGGGAGAGTGCTGCCGTCGAGGAATCTGTCGACGGGAATGTGAGGTCGGCGGATG
JMFN014E02+ GCGGTTGGGAGAGTGCTGCCGTCGAGGAATCTGTCGACGGGAATGTGAGGTCGGCGGATG
rJMFF032F22- GCGGTTGGGAGAGTGCTGCCGTCGAGGAATCTGTCGACGGGAATGTGAGGTCGGCGGATG
JMFS133A07+ GCGGTTGGGAGAGTGCTGCCGTCGAGGAATCTGTCGACGGGAATGTGAGGTCGGCGGATG
JMFN008N20+ TCTGTCGACGGGAATGTGAGGTCGGCGGATG
____________________________________________________________
consensus GCGGTTGGGAGAGTGCTGCCGTCGAGGAATCTGTCGACGGGAATGTGAGGTCGGCGGATG
. : . : . : . : . : . :
rJMFF011J18- AAA
JMFN014E02+ AAATAGGTATTC
rJMFF032F22- AAATAGGTATTCCCCTTCTTCCCCACGCTAATCACCGTGTAATCCAC
JMFS133A07+ AAATAGGTATTCCCCTTCTTCCCCACGCTAATCACCGTGTAATCCACGCCGAGCCCCTTG
JMFN008N20+ AAATAGGTATTCCCCTTCTTCCCCACGCTAATCACCGTGTAATCCACGCCGAGCCCCTTG
____________________________________________________________
consensus AAATAGGTATTCCCCTTCTTCCCCACGCTAATCACCGTGTAATCCACGCCGAGCCCCTTG
. : . : . : . : . : . :
JMFS133A07+ AGCTCCGCAATCCTGGCCTCGGCTTTCTTGAGGATATTACTGTTGAACGCGCCGCAGAGG
JMFN008N20+ AGCTCCGCAATCCTGGCCTCGGCTTTCTTGAGGATATTACTGTTGAACGCGCCGCAGAGG
JMFF003H03+ CTTGAGGATATTACTGTTGAACGCGCCGCAGAGG
JMFF011J18+ CTTGAGGATATTACTGTTGAACGCGCCGCAGAGG
____________________________________________________________
consensus AGCTCCGCAATCCTGGCCTCGGCTTTCTTGAGGATATTACTGTTGAACGCGCCGCAGAGG
. : . : . : . : . : . :
JMFS133A07+ CCACGGTCGCCGGTGACGACCACCAGGGCGACTTTCTTGACGGGGCGGACCTTCGTGAGC
JMFN008N20+ CCACGGTCGCCGGTGACGACCACCAGGGCGACTTTCTTGACGGGGCGGACCTTCGTGAGC
JMFF003H03+ CCACGGTCGCCGGTGACGACCACCAGGGCGACTTTCTTGACGGGGCGGACCTTCGTGAGC
JMFF011J18+ CCACGGTCGCCGGTGACGACCACCAGGGCGACTTTCTTGACGGGGCGGACCTTCGTGAGC
____________________________________________________________
consensus CCACGGTCGCCGGTGACGACCACCAGGGCGACTTTCTTGACGGGGCGGACCTTCGTGAGC
. : . : . : . : . : . :
JMFS133A07+ GGCACCTCCGCGTCGTCCGTCTGGAGCTGCTCGTTGATGTTGTAAAGAACCTCAACGAGG
JMFN008N20+ GGCACCTCCGCGTCGTCCGTCTGGAGCTGCTCGTTGATGTTGTAAAGAACCTCAACGAGG
JMFF003H03+ GGCACCTCCGCGTCGTCCGTCTGGAGCTGCTCGTTGATGTTGTAAAGAACCTCAACGAGG
JMFF011J18+ GGCACCTCCGCGTCGTCCGTCTGGAGCTGCTCGTTGATGTTGTAAAGAACCTCAACGAGG
JMFF032F22+ TTGTAAAGAACCTCAACGAGG
____________________________________________________________
consensus GGCACCTCCGCGTCGTCCGTCTGGAGCTGCTCGTTGATGTTGTAAAGAACCTCAACGAGG
. : . : . : . : . : . :
JMFS133A07+ GTCTCCGAGAAGGGCCGCCCGTTCACCACGGCTTCCTGGGCTCTCCTCACTTTAGCCGCC
JMFN008N20+ GTCTCCGAGAAGGGCCGCCCGTTCACCACGGCTTCCTGGGCTCTCCTCACTTTAGCCGCC
JMFF003H03+ GTCTCCGAGAAGGGCCGCCCGTTCACCACGGCTTCCTGGGCTCTCCTCACTTTAGCCGCC
JMFF011J18+ GTCTCCGAGAAGGGCCGCCCGTTCACCAACGCTTCCTGGGCTCTCCTCACTTTAGCCGCC
JMFF032F22+ GTCTCCGAGAAGGGCCGCCCGTTCACCANCGCTTCCTGGGCTCTCCTCACTTTAGCCGCC
____________________________________________________________
consensus GTCTCCGAGAAGGGCCGCCCGTTCACCACGGCTTCCTGGGCTCTCCTCACTTTAGCCGCC
. : . : . : . : . : . :
JMFS133A07+ GCCACCAGCTTCATGGCCTCCGTGATCTTCCCGGTGTTCTTCACCGACGTAATCCGATCA
JMFN008N20+ GCCACCAGCTTCATGGCCTCCGTGATCTTCCCGGTGTTCTTCACCGACGTAATCCGATCA
JMFF003H03+ GCCACCAGCTTCATGGCCTCCGTGATCTTCCCGGTGTTCTTCACCGACGTAATCCGATCA
JMFF011J18+ GCCACCAGCTTCATGGCCTCCGTGATCTTCCCGGTGTTCTTCACCGACGTAATCCGATCA
JMFF032F22+ GCCACCAGCTTCATGGCCTCCGTGATCTTCCCGGTGTTCTTCACCGACGTAATCCGATCA
____________________________________________________________
consensus GCCACCAGCTTCATGGCCTCCGTGATCTTCCCGGTGTTCTTCACCGACGTAATCCGATCA
. : . : . : . : . : . :
JMFS133A07+ CGGAGCTCGCGCAGGTCGCACCGGATTGGGGCCACCGACGACGATCTAGACGGGTTGCAG
JMFN008N20+ CGGAGCTCGCGCAGGTCGCACCGGATTGGGGCCACCGACGACGATCTAGACGGGTTGCAG
JMFF003H03+ CGGAGCTCGCGCAGGTCGCACCGGATTGGGGCCACCGACGACGATCTAGACGGGTTGCAG
JMFF011J18+ CGGAGCTCGCGCAGGTCGCACCGGATTGGGGCCACCGACGACGATCTAGACGGGTTGCAG
JMFF032F22+ CGGAGCTCGCGCAGGTCGCACCGGATTGGGGCCACCGACGACGATCTAGACGGGTTGCAG
____________________________________________________________
consensus CGGAGCTCGCGCAGGTCGCACCGGATTGGGGCCACCGACGACGATCTAGACGGGTTGCAG
. : . : . : . : . : . :
JMFS133A07+ GAGCCGCCGGAGCTCTGGGCGGGGAGCTGCAGCGGGTTGAGAGAAGAGCCGAAAGAGAGC
JMFN008N20+ GAGCCGCCGGAGCTCTGGGCGGGGAGCTGCAGCGGGTTGAGAGAAGAGCCGAAAGAGAGC
JMFF003H03+ GAGCCGCCGGAGCTCTGGGCGGGGAGCTGCAGCGGGTTGAGAGAAGAGCCGAAAGAGAGC
JMFF011J18+ GAGCCGCCGGAGCTCTGGGCGGGGAGCTGCAGCGGGTTGAGAGAAGAGCCGAAAGAGAGC
JMFF032F22+ GAGCCGCCGGAGCTCTGGGCGGGGAGCTGCAGCGGGTTGAGAGAAGAGCCGAAAGAGAGC
____________________________________________________________
consensus GAGCCGCCGGAGCTCTGGGCGGGGAGCTGCAGCGGGTTGAGAGAAGAGCCGAAAGAGAGC
. : . : . : . : . : . :
JMFS133A07+ AGAGAGGAGTTGGAAAGGGAAGGT
JMFN008N20+ AGAGAGGAGTTGGAAAGGGAAGGTTTTGACGACACCAACATTGTCAGATTGGAGCAAGAC
JMFF003H03+ AGAGAGGAGTTGGAAAGGGAAGGTTTTGACGACACCAACATTGTCAGATTGGAGCAAGAC
JMFF011J18+ AGAGAGGAGTTGGAAAGGGAAGGTTTTGACGACACCAACATTGTCAGATTGGAGCAAGAC
JMFF032F22+ AGAGAGGAGTTGGAAAGGGAAGGTTTTGACGACACCAACATTGTCAGATTGGAGCAAGAC
____________________________________________________________
consensus AGAGAGGAGTTGGAAAGGGAAGGTTTTGACGACACCAACATTGTCAGATTGGAGCAAGAC
. : . : . : . : . : . :
JMFN008N20+ ATGGCTGTAAACTACGAACACTTTAAGCCTGAGCTTCAGGAGATTGAA
JMFF003H03+ ATGGCTGTAAACTACGAACACTTTAAGCCTGAGCTTCAGGAGATTGAAAGCAGGCGAAGA
JMFF011J18+ ATGGCTGTAAACTACGAACACTTTAAGCCTGAGCTTCAGGAGATTGAAAGCAGGCGAAGA
JMFF032F22+ ATGGCTGTAAACTACGAACACTTTAAGCCTGAGCTTCAGGAGATTGAAAGCAGGCGAAGA
____________________________________________________________
consensus ATGGCTGTAAACTACGAACACTTTAAGCCTGAGCTTCAGGAGATTGAAAGCAGGCGAAGA
. : . : . : . : . : . :
JMFF003H03+ TGAGAAGTGGGGAAGAAA
JMFF011J18+ TGAGAAGTGGGGAAGAAA
JMFF032F22+ TGAGAAGTGGGGAAGAAATGGGGAGTGATGAGTTTTTGCATAAGAGATGTTTTTTTTGAT
____________________________________________________________
consensus TGAGAAGTGGGGAAGAAATGGGGAGTGATGAGTTTTTGCATAAGAGATGTTTTTTTTGAT