Contig 003203:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011D08Sequence441003203 (5)ref|XP_010262690.1|3e-61PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]654003203 (5)emb|CDP19639.1|2e-62unnamed protein product [Coffea canephora]
JMFF030N13Sequence367003203 (5)ref|XP_010262690.1|7e-33PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]496003203 (5)ref|XP_011084974.1|2e-43PREDICTED: 17.5 kDa class I heat shock protein-like [Sesamum indicum]
JMFN041M10Sequence570003203 (5)emb|CDP19639.1|3e-65unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMFF011D08-                                                   TAATCTCGTAATTGAACAA
                      ____________________________________________________________
consensus                                                      TAATCTCGTAATTGAACAA
 
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JMFN041M10+                              CTCTGATTATATTATATTGCCAACATTAAAGACAAAACATT
rJMFF030N13-                                                                   ATT
rJMFF011D08-          CTGAACAAGTAATAGAGAACTCTGATTATATTATATTGCCAACATTAAAGACAAAACATT
                      ____________________________________________________________
consensus             CTGAACAAGTAATAGAGAACTCTGATTATATTATATTGCCAACATTAAAGACAAAACATT
 
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JMFN041M10+           TACAAGAAGAAGTCGAATTGAACTTCAAACACCAACATTGAAGAAAGCCTTCCCAGTACA
rJMFF030N13-          TACAAGAAGAAGTCGAATTGAACTTCAAACACCAACATTGAAGAAAGCCTTCCCAGTACA
rJMFF011D08-          TACAAGAAGAAGTCGAATTGAACTTCAAACACCAACATTGAAGAAAGCCTTCCCAGTACA
                      ____________________________________________________________
consensus             TACAAGAAGAAGTCGAATTGAACTTCAAACACCAACATTGAAGAAAGCCTTCCCAGTACA
 
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JMFN041M10+           GTGAAACAACACAACCAGAAAACCAAACCGTCAACG-TTTTTTTTTTTAAAACCTTATTA
rJMFF030N13-          GTGAAACAACACAACCAGAAAACCAAACCGTCAACGTTTTTTTTTTTTAAAACCTTATTA
rJMFF011D08-          GTGAAACAACACAACCAGAAAACCAAACCGTCAACG-TTTTTTTTTTTAAAACCTTATTA
                      ____________________________________________________________
consensus             GTGAAACAACACAACCAGAAAACCAAACCGTCAACG-TTTTTTTTTTTAAAACCTTATTA
 
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JMFN041M10+           ACACTGAAACATTTGGGCAAAGACAGTCAAACGTCGGAAATTAGCCGGAAATGTCGATGG
rJMFF030N13-          ACACTGAAACNTTTGGGCAAANACAGTCAAACGTCGGAAATTACCCGGAAATGTCNANGG
rJMFF011D08-          ACACTGAAACATTTGGGCAAANACAGTCAAACGTCGGAAATTANCCGGAAATGTCNATGG
                      ____________________________________________________________
consensus             ACACTGAAACATTTGGGCAAAGACAGTCAAACGTCGGAAATTAGCCGGAAATGTCGATGG
 
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JMFN041M10+           ATTTCACATCATGCTTCTTCTCCTCCTCCTTTGGAACTGTGACGGTCAGAACGCCGTTGT
rJMFF030N13-          ATTTCACATCANGCTTCTTCNCCNCCTCCTTTGNAACTGNGACGGTCAAAACNCCGTTGN
rJMFF011D08-          ATTTCACATCATGCTTCTTCTCCTCCTCCTTTGGAACTGNGACGGTCAAAACGCCGTTGT
                      ____________________________________________________________
consensus             ATTTCACATCATGCTTCTTCTCCTCCTCCTTTGGAACTGTGACGGTCAAAACGCCGTTGT
 
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JMFN041M10+           CCATGCTAGCCTTCACTTGATCCACCTTAGCATTCTCCGGCAGCCGGAACCTCCTGACGA
rJMFF030N13-          CCATGCTANCCTTCNCTTGATCCNCCTTANCATTCTCCGGCAGCCGGAACCTCCTGACAA
rJMFF011D08-          CCATGCTAGCCTTCACTTGATCCACCTTAGCATTCTCCGGCAGCCGGAACCTCCTGACNA
JMFF011D08+                                               CCGGCAGCCGGAACCTCCTGACGA
                      ____________________________________________________________
consensus             CCATGCTAGCCTTCACTTGATCCACCTTAGCATTCTCCGGCAGCCGGAACCTCCTGACGA
 
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JMFN041M10+           ACTTCCCGGAGCTCCGCTCGACGCGGTGCCAAGTGTCGCCCTTCTCCTCCATCTCCCGCT
rJMFF030N13-          ANTTCCCGGAGCTCCGCTCNACNCGGGGCCAAGNGTCNCCCTTCTCCTCCATNTCCCGNT
rJMFF011D08-          ACTTCCCGGAGCTCCGCTCGACGCGGNGCCAAGNGTCGCCCTTCTCCTCCATCTCCCGCT
JMFF011D08+           ACTTCCCGGAGCTCCGCTCGACGCGGTGCCAAGTGTCGCCCTTCTCCTCCATCTCCCGCT
                      ____________________________________________________________
consensus             ACTTCCCGGAGCTCCGCTCGACGCGGTGCCAAGTGTCGCCCTTCTCCTCCATCTCCCGCT
 
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JMFN041M10+           TCCGCTCGCCGCTGATCTGGAGGATCCGGTCGTCCTCCATCTCCACCTTCACCTCCTCCT
rJMFF030N13-          TCCGCTCGCCGCTGATCTGGAGGATCCGGTCGTCCTCCATCTCCACCTTCACCTCCTCCT
rJMFF011D08-          TCCGCTCGCCGCTGATCTGGAGGATCCGGTCGTCCTCCATCTCCACCTTCACCTCCTCCT
JMFF011D08+           TCCGCTCGCCGCTGATCTGGAGGATCCGGTCGTCCTCCATCTCCACCTTCACCTCCTCCT
JMFF030N13+                                                                TCCTCCT
                      ____________________________________________________________
consensus             TCCGCTCGCCGCTGATCTGGAGGATCCGGTCGTCCTCCATCTCCACCTTCACCTCCTCCT
 
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JMFN041M10+           TCCGGAGCCCCGGGACGTCCGCCTTGAACACGTGCGCGTTCGGAGTCTCCTTCCAGTCGA
rJMFF030N13-          TCCGGAGCCCCGGGACGTCCNCCTTGAACACGNGCNCGTTCGGAGTCTCCTTCCAGTCAA
rJMFF011D08-          TCCGGAGCCCCGGGACGTCCGCCTTGAACACGTGCGCGTTCGGAGTCTCCTTCCAGTCGA
JMFF011D08+           TCCGGAGCCCCGGGACGTCCGCCTTGAACACGTGCGCGTTCGGAGTCTCCTTCCAGTCGA
JMFF030N13+           TCCGGAGCCCCGGGACGTCCGCCTTGAACACGTGCGCGTTCGGAGTCTCCTTCCAGTCGA
                      ____________________________________________________________
consensus             TCCGGAGCCCCGGGACGTCCGCCTTGAACACGTGCGCGTTCGGAGTCTCCTTCCAGTCGA
 
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JMFN041M10+           TGCTCGCCTGCGCGAACGACGACGTCTCGGTAGACGACGGCGGGAAGTTG          
rJMFF030N13-          TGCTCNCCTGC                                                 
rJMFF011D08-          TGCTCGCCTGCGCGAACGACGACGTCTCGGTANACNACGGCGGGAAGTTGGAGCGGAACT
JMFF011D08+           TGCTCGCCTGCGCGAACGACGACGTCTCGGTAGACGACGGCGGGAAGTTGGAGCGGAACT
JMFF030N13+           TGCTCGCCTGCGCGAACGACGACGTCTCGGTAGACGACGGCGGGAAGTTGGAGCGGAACT
                      ____________________________________________________________
consensus             TGCTCGCCTGCGCGAACGACGACGTCTCGGTAGACGACGGCGGGAAGTTGGAGCGGAACT
 
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rJMFF011D08-          GCTCGGANAGTGGCCGGAAGTTGCCGATAGGAAACC                        
JMFF011D08+           GCTCGGAGAGTGGCCGGAAGTTGCCGATAGGAAACCCGTCGAATGGATCCCAGACGTCGA
JMFF030N13+           GCTCGGAGAGTGGCCGGAAGTTGCCGATAGGAAACCCGTCGAATGGATCCCAGACGTCGA
                      ____________________________________________________________
consensus             GCTCGGAGAGTGGCCGGAAGTTGCCGATAGGAAACCCGTCGAATGGATCCCAGACGTCGA
 
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JMFF011D08+           GGGAAAACGGGTCGAAAACGTTGGATCGGCGGCCGAAGAAACTTGGAATGATCGACATGA
JMFF030N13+           GGGAAAACGGGTCGAAAACGTTGGATCGGCGGCCGAAGAAACTTGGAATGATCGACATGA
                      ____________________________________________________________
consensus             GGGAAAACGGGTCGAAAACGTTGGATCGGCGGCCGAAGAAACTTGGAATGATCGACATGA
 
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JMFF011D08+           TTGGATAGTGAGTAAAGTGTAGAATTAACAATCTGCGAGATTAAGCTTATGTTTTTC   
JMFF030N13+           TTGGATAGTGAGTAAAGTGTAGAATTAACAATCTGCGAGATTAAGCTTATGTTTTTCGGA
                      ____________________________________________________________
consensus             TTGGATAGTGAGTAAAGTGTAGAATTAACAATCTGCGAGATTAAGCTTATGTTTTTCGGA
 
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JMFF030N13+           TTATTCCGGCGAGAATTGTCGACTTTAAAAAGCCGTTCCGGATAAAGTTCGAGGTTACTC
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consensus             TTATTCCGGCGAGAATTGTCGACTTTAAAAAGCCGTTCCGGATAAAGTTCGAGGTTACTC