| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001J14 | Sequence | 592 | 003201 (12) | ref|XP_009770420.1| | 7e-106 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 675 | 012266 (13) | gb|ABR25526.1| | 1e-115 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF011E12 | Sequence | 617 | 003201 (12) | ref|XP_009770420.1| | 7e-108 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 727 | 012266 (13) | gb|ABR25526.1| | 5e-123 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF011L16 | Sequence | 555 | 003201 (12) | ref|XP_009770420.1| | 2e-91 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 749 | 012266 (13) | gb|ABR25526.1| | 4e-131 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF014B02 | Sequence | 598 | 003201 (12) | ref|XP_009770420.1| | 9e-71 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 301 | 012266 (13) | |||
| JMFF019A06 | Sequence | 546 | 003201 (12) | ref|XP_009599866.1| | 3e-87 | PREDICTED: 26S protease regulatory subunit 8 homolog A [Nicotiana tomentosiform | 772 | 012266 (13) | gb|ABR25526.1| | 2e-120 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF019H15 | Sequence | 559 | 003201 (12) | ref|XP_009770420.1| | 2e-91 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 716 | 012266 (13) | gb|ABR25526.1| | 6e-123 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF023B16 | Sequence | 505 | 003201 (12) | ref|XP_009770420.1| | 6e-83 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 733 | 012266 (13) | gb|AFW66097.1| | 2e-93 | hypothetical protein ZEAMMB73_419750 [Zea mays] |
| JMFF030L04 | Sequence | 473 | 003201 (12) | ref|XP_009770420.1| | 7e-64 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 601 | 012266 (13) | gb|AFW66097.1| | 9e-101 | hypothetical protein ZEAMMB73_419750 [Zea mays] |
| JMFF031D08 | Sequence | 589 | 003201 (12) | ref|XP_009770420.1| | 4e-100 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 678 | 012266 (13) | gb|ABR25526.1| | 1e-107 | 26S protease regulatory subunit 8 [Oryza sativa Indica Group] |
| JMFF041K02 | Sequence | 644 | 003201 (12) | ref|XP_009770420.1| | 7e-114 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | |||||
| JMFF048F19 | Sequence | 431 | 003201 (12) | ref|XP_009770420.1| | 7e-58 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 218 | 012266 (13) | |||
| JMFF049F23 | Sequence | 644 | 003201 (12) | ref|XP_009770420.1| | 2e-115 | PREDICTED: 26S protease regulatory subunit 8 homolog A-like [Nicotiana sylvestr | 588 | 012266 (13) | gb|AFW66097.1| | 6e-63 | hypothetical protein ZEAMMB73_419750 [Zea mays] |
This contig is upended
. : . : . : . : . : . :
JMFF041K02+ AACTCA
____________________________________________________________
consensus AACTCA
. : . : . : . : . : . :
JMFF049F23+ TTAATGGGAAGCTCAATAACCTCCTTAATCTCTNTGATTGNCTGATCAAGGCCAC
JMFF001J14+ CTGATCAAGGCCAC
JMFF019A06+ CTGATCAAGGCCAC
JMFF041K02+ GGATGTTAATGGGAAGCTCAATAACCTCCTTAATCTCTTTGATNTGCTGATCAAGGCCAC
JMFF011E12+ TTGATTTGCTGATCAAGGCCAC
____________________________________________________________
consensus GGATGTTAATGGGAAGCTCAATAACCTCCTTAATCTCTTTGATTTGCTGATCAAGGCCAC
. : . : . : . : . : . :
JMFF049F23+ CAATCATATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
JMFF001J14+ CAATCATATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
JMFF019A06+ CAATCATATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
JMFF041K02+ CAATCATATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
JMFF011E12+ CAATCATATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
JMFF011L16+ CATGAGGTTGACTAAAGGAT
JMFF031D08+ TATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
JMFF014B02+ AATCATATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
JMFF019H15+ TCATGAGGTTGACTAAAGGAT
____________________________________________________________
consensus CAATCATATCATAAGTAGAGTCAGGAACCTTTTCAACTTTCATGAGGTTGACTAAAGGAT
. : . : . : . : . : . :
JMFF049F23+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF001J14+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF019A06+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF041K02+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF011E12+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF011L16+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF023B16+ TAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF031D08+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF014B02+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
JMFF019H15+ CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
____________________________________________________________
consensus CCACTTTGCTTGGTAAAATTAAGTGAAGAACATAGCTATCATTACGAAGGGCAACTCTGG
. : . : . : . : . : . :
JMFF049F23+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF001J14+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF019A06+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF041K02+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF011E12+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF011L16+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF023B16+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF031D08+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF014B02+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCACAATATTTCCCT
JMFF048F19+ AC-ATATTTCCCT
JMFF019H15+ TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
JMFF030L04+ GTCAATGCTCTTATCAACATCAACCAC-ATATTTCCNT
____________________________________________________________
consensus TAGATGGAGTAATCTTTGTTATGTCAATGCTCTTATCAACATCAACCAC-ATATTTCCCT
. : . : . : . : . : . :
JMFF049F23+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF001J14+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF019A06+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF041K02+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF011E12+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF011L16+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF023B16+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF031D08+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF014B02+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAACC
JMFF048F19+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTGTGACAACTTCACCAA-C
JMFF019H15+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
JMFF030L04+ TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
____________________________________________________________
consensus TCAGGATGGACTTTCACTAAAACTTTAGATTTCCCCATCACTTTGACAACTTCACCAA-C
. : . : . : . : . : . :
JMFF049F23+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF001J14+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF019A06+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF041K02+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF011E12+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF011L16+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF023B16+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF031D08+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF014B02+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF048F19+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF019H15+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
JMFF030L04+ ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
____________________________________________________________
consensus ATAAGACCCAGGCTCCTGAAGCAACTGTAACTCTTCCTTCAGCATTCTTACTTTTGAATT
. : . : . : . : . : . :
JMFF049F23+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF001J14+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF019A06+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF041K02+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF011E12+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF011L16+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF023B16+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF031D08+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF014B02+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF048F19+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF019H15+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
JMFF030L04+ GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
____________________________________________________________
consensus GAGCTCGTTGCGCTGGGCTTCGAGCCGATTGAGATTATGAGTCTTTTGGCGGACTTGAAG
. : . : . : . : . : . :
JMFF049F23+ TTGGGGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF001J14+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF019A06+ TTGGAGATCGTGGATGTGCTGCATATAGTA-TGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF041K02+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF011E12+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF011L16+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF023B16+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF031D08+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF014B02+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF048F19+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF019H15+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
JMFF030L04+ TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
____________________________________________________________
consensus TTGGAGATCGTGGATGTGCTGCATATAGTATTGCCTCAAGCCTTCGCCTTGCTTCATCGG
. : . : . : . : . : . :
JMFF049F23+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF001J14+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF019A06+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF041K02+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF011E12+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF011L16+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF023B16+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF031D08+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF014B02+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF048F19+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF019H15+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
JMFF030L04+ CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
____________________________________________________________
consensus CTTCGCAGAACAGCTCTCCTCTCTCTCTGATTCGGGTCGGGTCTTCTCTACACCAGCTGT
. : . : . : . : . : . :
JMFF049F23+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF001J14+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF019A06+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAAT
JMFF041K02+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF011E12+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF011L16+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF023B16+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF031D08+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF014B02+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF048F19+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF019H15+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
JMFF030L04+ TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
____________________________________________________________
consensus TGCCATTTTTTCCGATTCCTGGTTCTAGGTTTCCGGTGACAGTTCCACGGCGAATAAGAA
. : . : . : . : . : . :
JMFF049F23+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATT
JMFF001J14+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATT
JMFF041K02+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATT
JMFF011E12+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTAC
JMFF011L16+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTACAG
JMFF023B16+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATT
JMFF031D08+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTACAG
JMFF014B02+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTACAGA
JMFF048F19+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTACAGA
JMFF019H15+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTACAGA
JMFF030L04+ GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTACAGAAT
____________________________________________________________
consensus GAAGAAGGAGAGAGCTCTGATTAGGCGGTGGGTTGGAATTGAGATTGGATTCTACAGAAT