Contig 003197:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN016A24+                                                                  ATGAT
JMFN035J06+                                                               ATTATGAT
JMFF043D09+                                                                  ATGAT
JMFN036E15+                                                                    GAT
JMFN007I09+                                                                  ATGAT
rJMFF043D09-                                                                 ATGAT
JMFN019L04+                                                                    GAT
JMFN014B16+                                                                  ATGAT
                      ____________________________________________________________
consensus                                                                 ATTATGAT
 
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JMFN016A24+           AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
JMFN035J06+           AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
JMFF043D09+           AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
JMFN036E15+           AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
rJMFF030G13-                                             CGTCCACAATCGACATAAAACCTAG
JMFN007I09+           AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
rJMFF043D09-          AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
JMFN019L04+           AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
rJMFF020N02-                                    TAATGGTTTCGTCCACAATCGACATAAAACCTAG
JMFN008N21+                                                               AAACCTAG
JMFN032A16+                                                               AAACCTAG
JMFN014B16+           AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
JMFN008H05+                                                               AAACCTAG
                      ____________________________________________________________
consensus             AAAAAGATGTTTATTTATTCAATACATAATGGTTTCGTCCACAATCGACATAAAACCTAG
 
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JMFN016A24+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN035J06+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFF043D09+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN036E15+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
rJMFF030G13-          TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN007I09+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
rJMFF043D09-          TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN019L04+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
rJMFF020N02-          TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN008N21+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN032A16+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN014B16+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
JMFN008H05+           TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
                      ____________________________________________________________
consensus             TTCCATACAAGCTAGTACAGTGGTAGAACCCTAGAACTAGACTAAAATCAAAAGATCCAG
 
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JMFN016A24+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN035J06+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFF043D09+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN036E15+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
rJMFF030G13-          ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN007I09+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
rJMSF014C02-                 AATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
rJMFF043D09-          ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN019L04+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
rJMFF020N02-          ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN008N21+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN032A16+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN014B16+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
JMFN008H05+           ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
                      ____________________________________________________________
consensus             ATTACATAATTTCATACAAAATACAGACAGACAAACACAGGTATATATCTTCCATCGCCG
 
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JMFN016A24+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN035J06+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFF043D09+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN036E15+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
rJMFF030G13-          TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN007I09+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
rJMSF014C02-          TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
rJMFF043D09-          TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN019L04+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
rJMFF020N02-          TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN008N21+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN032A16+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN014B16+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
JMFN008H05+           TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
                      ____________________________________________________________
consensus             TGGAACTGAACCTGCTAGCTTATTAATCATGAGATATATTTGTCAAGCACCAGATCTGCA
 
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JMFN016A24+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN035J06+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFF043D09+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN036E15+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
rJMFF030G13-          GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN007I09+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
rJMSF014C02-          GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
rJMFF043D09-          GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN019L04+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
rJMFF020N02-          GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN008N21+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN032A16+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN014B16+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
JMFN008H05+           GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
                      ____________________________________________________________
consensus             GATCAGAGATGATCTAAGTCAACTGCGTAGTATCTAGTGGGGATGATGATGATGTGGGGG
 
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JMFN016A24+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN035J06+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFF043D09+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN036E15+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
rJMFF030G13-          ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN007I09+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
rJMSF014C02-          ATGCGGATGGGGAT-GGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
rJMFF043D09-          ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN019L04+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
rJMFF020N02-          ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN008N21+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN032A16+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN014B16+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
JMFN008H05+           ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
                      ____________________________________________________________
consensus             ATGCGGATGGGGATGGGCCACAGAAGGAGCACCAGGAGCGTTGTGAACCTGCCCCGGCCC
 
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JMFN016A24+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN035J06+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFF043D09+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN036E15+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
rJMFF030G13-          ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN007I09+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
rJMSF014C02-          ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
rJMFF043D09-          ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN019L04+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
rJMFF020N02-          ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN008N21+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN032A16+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN014B16+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
JMFN008H05+           ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
                      ____________________________________________________________
consensus             ACGGTGCACGTGAACTGCCGGCGGAGGTGGATGGTGCACTACTGGCGGAGGTGGTGGATG
 
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JMFN016A24+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGG     
JMFN035J06+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFF043D09+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFN036E15+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTG 
rJMFF030G13-          GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFN007I09+           GTTCACGTGAACTACTGGCGGCG                                     
rJMSF014C02-          GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
rJMFF043D09-          GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFN019L04+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
rJMFF020N02-          GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFN008N21+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFN032A16+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFN014B16+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
JMFN008H05+           GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
                      ____________________________________________________________
consensus             GTTCACGTGAACTACTGGCGGCGGCGGTGGAGGTGAGTGTTTATGCGGGGGGCGGTGTGC
 
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JMFF043D09+           CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGG                       
rJMFF030G13-          CATTTTTCTTAGGATTTTTTTTTTTTTTGG                              
rJMSF014C02-          CATTTTTCTTAGGATTTTTTTTTTTTTT                                
rJMFF043D09-          CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGGAT                     
JMFN019L04+           CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGGATAAAAGTAGTGGGAGAGA    
rJMFF020N02-          CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGGATAAAAGTAGNGGGAAAAATATA
JMFN008N21+           CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGGATAAAAGTAGTGGGAGAGATATA
JMFN032A16+           CATTTTTC                                                    
JMFN014B16+           CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGGATAAAAGTAGTGGGAGAGATATA
JMFN008H05+           CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGGATAAAAGTAGTGGGAGAGATATA
JMFF020N02+                             TTTTTTTTTTGGGCTCAGGATAAAAGTAGTGGGAGAGATATA
JMFF030G13+                             TTTTTTTTTTGGGCTCAGGATAAAAGTAGTGGGAGAGATATA
                      ____________________________________________________________
consensus             CATTTTTCTTAGGATTTTTTTTTTTTTTGGGCTCAGGATAAAAGTAGTGGGAGAGATATA
 
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rJMFF020N02-          TAGGGATNTAAACA                                              
JMFN008N21+           TAGGGATATAAACA                                              
JMFN014B16+           TAGGGATATAAACAGCTTG                                         
JMFN008H05+           TAGGGATATAAACAGCTTG                                         
JMFF020N02+           TAGGGATATAAACAGCTTGCTAGGCAGTTGTCATCTGTCTAGCAAACTTGCAGAATTTGC
JMFF030G13+           TAGGGATATAAACAGCTTGCTAGGCAGTTGTCATCTGTCTAGCAAACTTGCAGAATTTGC
                      ____________________________________________________________
consensus             TAGGGATATAAACAGCTTGCTAGGCAGTTGTCATCTGTCTAGCAAACTTGCAGAATTTGC