Contig 003196:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030C12Sequence553003196 (4)emb|CDO97831.1|2e-44unnamed protein product [Coffea canephora]709003196 (4)ref|XP_009622144.1|4e-52PREDICTED: probable U6 snRNA-associated Sm-like protein LSm1 [Nicotiana tomento
JMFN009G16Sequence560003196 (4)ref|XP_009789765.1|1e-49PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Nico
JMSF027K15Sequence662020005ref|XP_004242268.1|1e-33PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Sola782003196 (4)ref|XP_009623736.1|3e-99PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Nico

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF027K15+ AAAGGGATATATTCTCGTGGAACATGATGATTTCAGGCTATGGAA
                      ____________________________________________________________
consensus AAAGGGATATATTCTCGTGGAACATGATGATTTCAGGCTATGGAA
 
. : . : . : . : . : . :
rJMSF027K15+ TGCACGGCCATGGTGATCGTGCTCTGGAAACCTTTGATCAGATGATTAAAGCTGGATTTA
                      ____________________________________________________________
consensus TGCACGGCCATGGTGATCGTGCTCTGGAAACCTTTGATCAGATGATTAAAGCTGGATTTA
 
. : . : . : . : . : . :
rJMSF027K15+ AACCAGACGAGGTTTCTATGGTGGCAATTCTCTCGGCATGTGGTCATGCAGGGCTCGTTA
                      ____________________________________________________________
consensus AACCAGACGAGGTTTCTATGGTGGCAATTCTCTCGGCATGTGGTCATGCAGGGCTCGTTA
 
. : . : . : . : . : . :
rJMSF027K15+ GTCAGGGCCGCAAACTTTTTGATCAAATGAGAACACGATTTGAGATTGAACCACAGGTGG
                      ____________________________________________________________
consensus GTCAGGGCCGCAAACTTTTTGATCAAATGAGAACACGATTTGAGATTGAACCACAGGTGG
 
. : . : . : . : . : . :
rJMSF027K15+ AGCATTATGCTTGTATGGTCGATCTTCTGGGCCGAGCTGGATTGATGCAAGAGGCTCACG
                      ____________________________________________________________
consensus AGCATTATGCTTGTATGGTCGATCTTCTGGGCCGAGCTGGATTGATGCAAGAGGCTCACG
 
. : . : . : . : . : . :
rJMSF027K15+ ACATTGTGCAAAACATGCCGATGAAACCCAACGCCTGTGTTTGGGGCGCGCTATTGAACT
JMFN009G16+ AACGCCTGTGTTTGGGGCGCGCTATTGAACT
                      ____________________________________________________________
consensus ACATTGTGCAAAACATGCCGATGAAACCCAACGCCTGTGTTTGGGGCGCGCTATTGAACT
 
. : . : . : . : . : . :
rJMSF027K15+ CGTGTAGAATGCATAAAAACACACAAGTTGCAGAGAAGGCTGCTGCTCAAATTCTCAATC
JMFN009G16+ CGTGTAGAATGCATAAAAACACACAAGTTGCAGAGAAGGCTGCTGCTCAAATTCTCAATC
                      ____________________________________________________________
consensus CGTGTAGAATGCATAAAAACACACAAGTTGCAGAGAAGGCTGCTGCTCAAATTCTCAATC
 
. : . : . : . : . : . :
rJMSF027K15+ TTGATTCTGAGATGACAGGGAGCTACATGTTGCTTTGTAACTTGTATGCTGGCTGTAGAA
JMFN009G16+ TTGATTTTGAGATGACAGGGAGCTACATGTTGCTTTGTAACTTGTATGCTGGCTGTAGAA
                      ____________________________________________________________
consensus TTGATTTTGAGATGACAGGGAGCTACATGTTGCTTTGTAACTTGTATGCTGGCTGTAGAA
 
. : . : . : . : . : . :
rJMSF027K15+ GATGGGATGACTCTGCAAATGTCAGACTTTCAGCAAAGACAAAGGGGTTGAAGAAAATTG
JMFN009G16+ GATGGGATGACTCTGCAAATGTCAGACTTTCAGCAAAGACAAAGGGGTTGAAGAAAATTG
                      ____________________________________________________________
consensus GATGGGATGACTCTGCAAATGTCAGACTTTCAGCAAAGACAAAGGGGTTGAAGAAAATTG
 
. : . : . : . : . : . :
rJMSF027K15+ CAGGGCATAGTTGGATTGAGGTGAAGAAGAAGGTGTATATGTTCTCC-CTGGAAAAGCCA
JMFN009G16+ CAGGGCATAGTTGGATTGAGGTGAAAAAGAAGGTGTATATGTTCTCCGCTGGAAAAGCCA
                      ____________________________________________________________
consensus CAGGGCATAGTTGGATTGAGGTGAAGAAGAAGGTGTATATGTTCTCCGCTGGAAAAGCCA
 
. : . : . : . : . : . :
rJMSF027K15+ TGCAGACAGGTATGGAGGAGATACATTGGATGCTTAATGTTTTGAGTTATCAAATGGAGG
JMFN009G16+ TGCAGACAGGTATGGAGGAGATACATTGGATGCTTAATGTTTTGAGTTATCAAATGGAGG
                      ____________________________________________________________
consensus TGCAGACAGGTATGGAGGAGATACATTGGATGCTTAATGTTTTGAGTTATCAAATGGAGG
 
. : . : . : . : . : . :
rJMSF027K15+ AAGAAGATCAAGGTTGCAAAACTGAACAAGATTTAGCAAAACAATTGTGAATATTTTTTT
JMFN009G16+ AAGAAGATCAAGGTTGCAAAACTGAACAAGATTTAGCAAAACAATTGTGAATATTTTTTT
                      ____________________________________________________________
consensus AAGAAGATCAAGGTTGCAAAACTGAACAAGATTTAGCAAAACAATTGTGAATATTTTTTT
 
. : . : . : . : . : . :
rJMSF027K15+ AAAATTTTTCTTTAATTCAAGGAGTCAGCATAACATTTGATTACAGTAGTAGATATAAGG
JMFN009G16+ AAAATTTTTCTTTAATTCAAGGAGTCAGCATAACATTTGATTACAGTAGTAGATATAAGG
rJMFF030C12- TATAAGG
                      ____________________________________________________________
consensus AAAATTTTTCTTTAATTCAAGGAGTCAGCATAACATTTGATTACAGTAGTAGATATAAGG
 
. : . : . : . : . : . :
rJMSF027K15+ TCTCTAACACTCAAAGAT
JMFN009G16+ TCTCTAACACTCAAAGATGTCATTCTTGATTCTACAATTTGATTTCAAGATAAAATTTGA
rJMFF030C12- TCTCTAACACTCAAAGATGTCATTCTTGATTCTACAATTTGATTTCAAGATAAAATTTGA
                      ____________________________________________________________
consensus TCTCTAACACTCAAAGATGTCATTCTTGATTCTACAATTTGATTTCAAGATAAAATTTGA
 
. : . : . : . : . : . :
JMFN009G16+ GC
rJMFF030C12- GCAACTCTCAATCCCATCTCCAGCAGCCATACTTTTACTCATCATTTCAAGATAAAACTG
                      ____________________________________________________________
consensus GCAACTCTCAATCCCATCTCCAGCAGCCATACTTTTACTCATCATTTCAAGATAAAACTG
 
. : . : . : . : . : . :
rJMFF030C12- AGCAACTCTCCATTCCATCTCCAGCAAGCAGCATACTTTACTCATCTAGTCTAGTAACAA
                      ____________________________________________________________
consensus AGCAACTCTCCATTCCATCTCCAGCAAGCAGCATACTTTACTCATCTAGTCTAGTAACAA
 
. : . : . : . : . : . :
rJMFF030C12- AAAGTAGACTTCAACCTAGCAACACTAGTATAATTTAAACACGACGACAATGGGCTTCGT
                      ____________________________________________________________
consensus AAAGTAGACTTCAACCTAGCAACACTAGTATAATTTAAACACGACGACAATGGGCTTCGT
 
. : . : . : . : . : . :
rJMFF030C12- AAGGGGCAGATGATGTGGCGAAACGGGGGTAGAAAAGTAAATGGGAAACAGACCCTCGAC
                      ____________________________________________________________
consensus AAGGGGCAGATGATGTGGCGAAACGGGGGTAGAAAAGTAAATGGGAAACAGACCCTCGAC
 
. : . : . : . : . : . :
rJMFF030C12- CTCGGTAGAGAATGCCTGACCGTCTGGTCCTAGTTACATTTTGCAGCACCCAGCAACCGC
                      ____________________________________________________________
consensus CTCGGTAGAGAATGCCTGACCGTCTGGTCCTAGTTACATTTTGCAGCACCCAGCAACCGC
 
. : . : . : . : . : . :
rJMFF030C12- GATAATATTTGCAGATGACATGGCGTGAGTGCAAACTGCAGAACCAGATTTCTCGTGCTG
                      ____________________________________________________________
consensus GATAATATTTGCAGATGACATGGCGTGAGTGCAAACTGCAGAACCAGATTTCTCGTGCTG
 
. : . : . : . : . : . :
rJMFF030C12- GAAACATCAGTCAGTCCATATCGAGGAACTCCATCCTCTTTCTCATAGTTCCTTTAAGAT
                      ____________________________________________________________
consensus GAAACATCAGTCAGTCCATATCGAGGAACTCCATCCTCTTTCTCATAGTTCCTTTAAGAT
 
. : . : . : . : . : . :
rJMFF030C12- CGGTAGCCTCTCTTTCTACTTTTTGTGCCCTTTTTATCTCTGCTTCTGAAACGCGAGTCA
JMFF030C12+ GAAACGCGAGTCA
                      ____________________________________________________________
consensus CGGTAGCCTCTCTTTCTACTTTTTGTGCCCTTTTTATCTCTGCTTCTGAAACGCGAGTCA
 
. : . : . : . : . : . :
rJMFF030C12- TATGAGGTGGAAGTTCCTCCTTATCCAAATCCAGCTCGCCGATCAGCACAACATTCTCTC
JMFF030C12+ TATGAGGTGGAAGTTCCTCCTTATCCAAATCCAGCTCGCCGATCAGCACAACATTCTCTC
                      ____________________________________________________________
consensus TATGAGGTGGAAGTTCCTCCTTATCCAAATCCAGCTCGCCGATCAGCACAACATTCTCTC
 
. : . : . : . : . : . :
rJMFF030C12- CACGAATTATGTATAGACCTAGCGGAATGTCACAATAGAGATCACCAACAATAACCCGCT
JMFF030C12+ CACGAATTATGTATAGACCTAGCGGAATGTCACAATAGAGATCACCAACAATAACCCGCT
                      ____________________________________________________________
consensus CACGAATTATGTATAGACCTAGCGGAATGTCACAATAGAGATCACCAACAATAACCCGCT
 
. : . : . : . : . : . :
rJMFF030C12- CACATGCACCTTCAAGAACAGCATTTGCAAATTGGTCAAAAG
JMFF030C12+ CACATGCACCTTCAAGAACAGCATTTGCAAATTGGTCAAAAGATCTAAGTGTGACCAAAA
                      ____________________________________________________________
consensus CACATGCACCTTCAAGAACAGCATTTGCAAATTGGTCAAAAGATCTAAGTGTGACCAAAA
 
. : . : . : . : . : . :
JMFF030C12+ GCTTCCGACCATCTCGCAGCAACACAAGAAGTTTCTTGTCAAGATAGCTGGCAAGAGAAG
                      ____________________________________________________________
consensus GCTTCCGACCATCTCGCAGCAACACAAGAAGTTTCTTGTCAAGATAGCTGGCAAGAGAAG
 
. : . : . : . : . : . :
JMFF030C12+ TGGAGAGGTGGATATCTTCCGGACTGGCCCAAGACATTATTGATGATAATGAAGGCCGGG
                      ____________________________________________________________
consensus TGGAGAGGTGGATATCTTCCGGACTGGCCCAAGACATTATTGATGATAATGAAGGCCGGG
 
. : . : . : . : . : . :
JMFF030C12+ AATTCGCGCTCGGAGTTGTTCAACTTTTCCGGTATCCGAAAATTCACCGAAAAATTACCC
                      ____________________________________________________________
consensus AATTCGCGCTCGGAGTTGTTCAACTTTTCCGGTATCCGAAAATTCACCGAAAAATTACCC
 
. : . : . : . : . : . :
JMFF030C12+ GAGTTATATTCAAATTGCATTGGCAGCGCAGCTTGAACTCAAATCAAGAACACCCTAATA
                      ____________________________________________________________
consensus GAGTTATATTCAAATTGCATTGGCAGCGCAGCTTGAACTCAAATCAAGAACACCCTAATA
 
. : . : . : . : . : . :
JMFF030C12+ GCTGAACCATAAACCCAGGTAACAAAACCCAAAAAGAGTTGACTTTCTAGGTTGATTCAG
                      ____________________________________________________________
consensus GCTGAACCATAAACCCAGGTAACAAAACCCAAAAAGAGTTGACTTTCTAGGTTGATTCAG
 
. : . : . : . : . : . :
JMFF030C12+ ATCTGAGAAAACCCTAAGTGTGGAAGTGGCCTATTTTTCCCAGGAACCGTAGAAGCACAT
                      ____________________________________________________________
consensus ATCTGAGAAAACCCTAAGTGTGGAAGTGGCCTATTTTTCCCAGGAACCGTAGAAGCACAT