Contig 003196:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF030C12Sequence553003196 (4)emb|CDO97831.1|2e-44unnamed protein product [Coffea canephora]709003196 (4)ref|XP_009622144.1|4e-52PREDICTED: probable U6 snRNA-associated Sm-like protein LSm1 [Nicotiana tomento
JMFN009G16Sequence560003196 (4)ref|XP_009789765.1|1e-49PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Nico
JMSF027K15Sequence662020005ref|XP_004242268.1|1e-33PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Sola782003196 (4)ref|XP_009623736.1|3e-99PREDICTED: putative pentatricopeptide repeat-containing protein At1g17630 [Nico

Alignment

This contig is upended


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rJMSF027K15+                         AAAGGGATATATTCTCGTGGAACATGATGATTTCAGGCTATGGAA
                      ____________________________________________________________
consensus                            AAAGGGATATATTCTCGTGGAACATGATGATTTCAGGCTATGGAA
 
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rJMSF027K15+          TGCACGGCCATGGTGATCGTGCTCTGGAAACCTTTGATCAGATGATTAAAGCTGGATTTA
                      ____________________________________________________________
consensus             TGCACGGCCATGGTGATCGTGCTCTGGAAACCTTTGATCAGATGATTAAAGCTGGATTTA
 
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rJMSF027K15+          AACCAGACGAGGTTTCTATGGTGGCAATTCTCTCGGCATGTGGTCATGCAGGGCTCGTTA
                      ____________________________________________________________
consensus             AACCAGACGAGGTTTCTATGGTGGCAATTCTCTCGGCATGTGGTCATGCAGGGCTCGTTA
 
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rJMSF027K15+          GTCAGGGCCGCAAACTTTTTGATCAAATGAGAACACGATTTGAGATTGAACCACAGGTGG
                      ____________________________________________________________
consensus             GTCAGGGCCGCAAACTTTTTGATCAAATGAGAACACGATTTGAGATTGAACCACAGGTGG
 
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rJMSF027K15+          AGCATTATGCTTGTATGGTCGATCTTCTGGGCCGAGCTGGATTGATGCAAGAGGCTCACG
                      ____________________________________________________________
consensus             AGCATTATGCTTGTATGGTCGATCTTCTGGGCCGAGCTGGATTGATGCAAGAGGCTCACG
 
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rJMSF027K15+          ACATTGTGCAAAACATGCCGATGAAACCCAACGCCTGTGTTTGGGGCGCGCTATTGAACT
JMFN009G16+                                        AACGCCTGTGTTTGGGGCGCGCTATTGAACT
                      ____________________________________________________________
consensus             ACATTGTGCAAAACATGCCGATGAAACCCAACGCCTGTGTTTGGGGCGCGCTATTGAACT
 
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rJMSF027K15+          CGTGTAGAATGCATAAAAACACACAAGTTGCAGAGAAGGCTGCTGCTCAAATTCTCAATC
JMFN009G16+           CGTGTAGAATGCATAAAAACACACAAGTTGCAGAGAAGGCTGCTGCTCAAATTCTCAATC
                      ____________________________________________________________
consensus             CGTGTAGAATGCATAAAAACACACAAGTTGCAGAGAAGGCTGCTGCTCAAATTCTCAATC
 
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rJMSF027K15+          TTGATTCTGAGATGACAGGGAGCTACATGTTGCTTTGTAACTTGTATGCTGGCTGTAGAA
JMFN009G16+           TTGATTTTGAGATGACAGGGAGCTACATGTTGCTTTGTAACTTGTATGCTGGCTGTAGAA
                      ____________________________________________________________
consensus             TTGATTTTGAGATGACAGGGAGCTACATGTTGCTTTGTAACTTGTATGCTGGCTGTAGAA
 
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rJMSF027K15+          GATGGGATGACTCTGCAAATGTCAGACTTTCAGCAAAGACAAAGGGGTTGAAGAAAATTG
JMFN009G16+           GATGGGATGACTCTGCAAATGTCAGACTTTCAGCAAAGACAAAGGGGTTGAAGAAAATTG
                      ____________________________________________________________
consensus             GATGGGATGACTCTGCAAATGTCAGACTTTCAGCAAAGACAAAGGGGTTGAAGAAAATTG
 
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rJMSF027K15+          CAGGGCATAGTTGGATTGAGGTGAAGAAGAAGGTGTATATGTTCTCC-CTGGAAAAGCCA
JMFN009G16+           CAGGGCATAGTTGGATTGAGGTGAAAAAGAAGGTGTATATGTTCTCCGCTGGAAAAGCCA
                      ____________________________________________________________
consensus             CAGGGCATAGTTGGATTGAGGTGAAGAAGAAGGTGTATATGTTCTCCGCTGGAAAAGCCA
 
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rJMSF027K15+          TGCAGACAGGTATGGAGGAGATACATTGGATGCTTAATGTTTTGAGTTATCAAATGGAGG
JMFN009G16+           TGCAGACAGGTATGGAGGAGATACATTGGATGCTTAATGTTTTGAGTTATCAAATGGAGG
                      ____________________________________________________________
consensus             TGCAGACAGGTATGGAGGAGATACATTGGATGCTTAATGTTTTGAGTTATCAAATGGAGG
 
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rJMSF027K15+          AAGAAGATCAAGGTTGCAAAACTGAACAAGATTTAGCAAAACAATTGTGAATATTTTTTT
JMFN009G16+           AAGAAGATCAAGGTTGCAAAACTGAACAAGATTTAGCAAAACAATTGTGAATATTTTTTT
                      ____________________________________________________________
consensus             AAGAAGATCAAGGTTGCAAAACTGAACAAGATTTAGCAAAACAATTGTGAATATTTTTTT
 
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rJMSF027K15+          AAAATTTTTCTTTAATTCAAGGAGTCAGCATAACATTTGATTACAGTAGTAGATATAAGG
JMFN009G16+           AAAATTTTTCTTTAATTCAAGGAGTCAGCATAACATTTGATTACAGTAGTAGATATAAGG
rJMFF030C12-                                                               TATAAGG
                      ____________________________________________________________
consensus             AAAATTTTTCTTTAATTCAAGGAGTCAGCATAACATTTGATTACAGTAGTAGATATAAGG
 
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rJMSF027K15+          TCTCTAACACTCAAAGAT                                          
JMFN009G16+           TCTCTAACACTCAAAGATGTCATTCTTGATTCTACAATTTGATTTCAAGATAAAATTTGA
rJMFF030C12-          TCTCTAACACTCAAAGATGTCATTCTTGATTCTACAATTTGATTTCAAGATAAAATTTGA
                      ____________________________________________________________
consensus             TCTCTAACACTCAAAGATGTCATTCTTGATTCTACAATTTGATTTCAAGATAAAATTTGA
 
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JMFN009G16+           GC                                                          
rJMFF030C12-          GCAACTCTCAATCCCATCTCCAGCAGCCATACTTTTACTCATCATTTCAAGATAAAACTG
                      ____________________________________________________________
consensus             GCAACTCTCAATCCCATCTCCAGCAGCCATACTTTTACTCATCATTTCAAGATAAAACTG
 
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rJMFF030C12-          AGCAACTCTCCATTCCATCTCCAGCAAGCAGCATACTTTACTCATCTAGTCTAGTAACAA
                      ____________________________________________________________
consensus             AGCAACTCTCCATTCCATCTCCAGCAAGCAGCATACTTTACTCATCTAGTCTAGTAACAA
 
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rJMFF030C12-          AAAGTAGACTTCAACCTAGCAACACTAGTATAATTTAAACACGACGACAATGGGCTTCGT
                      ____________________________________________________________
consensus             AAAGTAGACTTCAACCTAGCAACACTAGTATAATTTAAACACGACGACAATGGGCTTCGT
 
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rJMFF030C12-          AAGGGGCAGATGATGTGGCGAAACGGGGGTAGAAAAGTAAATGGGAAACAGACCCTCGAC
                      ____________________________________________________________
consensus             AAGGGGCAGATGATGTGGCGAAACGGGGGTAGAAAAGTAAATGGGAAACAGACCCTCGAC
 
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rJMFF030C12-          CTCGGTAGAGAATGCCTGACCGTCTGGTCCTAGTTACATTTTGCAGCACCCAGCAACCGC
                      ____________________________________________________________
consensus             CTCGGTAGAGAATGCCTGACCGTCTGGTCCTAGTTACATTTTGCAGCACCCAGCAACCGC
 
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rJMFF030C12-          GATAATATTTGCAGATGACATGGCGTGAGTGCAAACTGCAGAACCAGATTTCTCGTGCTG
                      ____________________________________________________________
consensus             GATAATATTTGCAGATGACATGGCGTGAGTGCAAACTGCAGAACCAGATTTCTCGTGCTG
 
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rJMFF030C12-          GAAACATCAGTCAGTCCATATCGAGGAACTCCATCCTCTTTCTCATAGTTCCTTTAAGAT
                      ____________________________________________________________
consensus             GAAACATCAGTCAGTCCATATCGAGGAACTCCATCCTCTTTCTCATAGTTCCTTTAAGAT
 
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rJMFF030C12-          CGGTAGCCTCTCTTTCTACTTTTTGTGCCCTTTTTATCTCTGCTTCTGAAACGCGAGTCA
JMFF030C12+                                                          GAAACGCGAGTCA
                      ____________________________________________________________
consensus             CGGTAGCCTCTCTTTCTACTTTTTGTGCCCTTTTTATCTCTGCTTCTGAAACGCGAGTCA
 
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rJMFF030C12-          TATGAGGTGGAAGTTCCTCCTTATCCAAATCCAGCTCGCCGATCAGCACAACATTCTCTC
JMFF030C12+           TATGAGGTGGAAGTTCCTCCTTATCCAAATCCAGCTCGCCGATCAGCACAACATTCTCTC
                      ____________________________________________________________
consensus             TATGAGGTGGAAGTTCCTCCTTATCCAAATCCAGCTCGCCGATCAGCACAACATTCTCTC
 
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rJMFF030C12-          CACGAATTATGTATAGACCTAGCGGAATGTCACAATAGAGATCACCAACAATAACCCGCT
JMFF030C12+           CACGAATTATGTATAGACCTAGCGGAATGTCACAATAGAGATCACCAACAATAACCCGCT
                      ____________________________________________________________
consensus             CACGAATTATGTATAGACCTAGCGGAATGTCACAATAGAGATCACCAACAATAACCCGCT
 
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rJMFF030C12-          CACATGCACCTTCAAGAACAGCATTTGCAAATTGGTCAAAAG                  
JMFF030C12+           CACATGCACCTTCAAGAACAGCATTTGCAAATTGGTCAAAAGATCTAAGTGTGACCAAAA
                      ____________________________________________________________
consensus             CACATGCACCTTCAAGAACAGCATTTGCAAATTGGTCAAAAGATCTAAGTGTGACCAAAA
 
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JMFF030C12+           GCTTCCGACCATCTCGCAGCAACACAAGAAGTTTCTTGTCAAGATAGCTGGCAAGAGAAG
                      ____________________________________________________________
consensus             GCTTCCGACCATCTCGCAGCAACACAAGAAGTTTCTTGTCAAGATAGCTGGCAAGAGAAG
 
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JMFF030C12+           TGGAGAGGTGGATATCTTCCGGACTGGCCCAAGACATTATTGATGATAATGAAGGCCGGG
                      ____________________________________________________________
consensus             TGGAGAGGTGGATATCTTCCGGACTGGCCCAAGACATTATTGATGATAATGAAGGCCGGG
 
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JMFF030C12+           AATTCGCGCTCGGAGTTGTTCAACTTTTCCGGTATCCGAAAATTCACCGAAAAATTACCC
                      ____________________________________________________________
consensus             AATTCGCGCTCGGAGTTGTTCAACTTTTCCGGTATCCGAAAATTCACCGAAAAATTACCC
 
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JMFF030C12+           GAGTTATATTCAAATTGCATTGGCAGCGCAGCTTGAACTCAAATCAAGAACACCCTAATA
                      ____________________________________________________________
consensus             GAGTTATATTCAAATTGCATTGGCAGCGCAGCTTGAACTCAAATCAAGAACACCCTAATA
 
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JMFF030C12+           GCTGAACCATAAACCCAGGTAACAAAACCCAAAAAGAGTTGACTTTCTAGGTTGATTCAG
                      ____________________________________________________________
consensus             GCTGAACCATAAACCCAGGTAACAAAACCCAAAAAGAGTTGACTTTCTAGGTTGATTCAG
 
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JMFF030C12+           ATCTGAGAAAACCCTAAGTGTGGAAGTGGCCTATTTTTCCCAGGAACCGTAGAAGCACAT
                      ____________________________________________________________
consensus             ATCTGAGAAAACCCTAAGTGTGGAAGTGGCCTATTTTTCCCAGGAACCGTAGAAGCACAT