Contig 003187:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF027H03Sequence622003187 (3)ref|XP_009788156.1|2e-06PREDICTED: putative UPF0481 protein At3g02645 isoform X2 [Nicotiana sylvestris]754004043 (2)ref|XP_009777972.1|7e-36PREDICTED: UPF0481 protein At3g47200-like, partial [Nicotiana sylvestris]
JMSF030A19Sequence546003187 (3)ref|XP_006368926.1|6e-07hypothetical protein POPTR_0001s14920g [Populus trichocarpa] gb|ERP65495.1| hypo741008561 (2)gb|EYU33527.1|4e-35hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]
JMSF047N03Sequence668003187 (3)ref|XP_009608055.1|9e-14PREDICTED: UPF0481 protein At3g47200-like [Nicotiana tomentosiformis]722008561 (2)gb|EYU33527.1|6e-35hypothetical protein MIMGU_mgv1a020659mg, partial [Erythranthe guttata]

Alignment

This contig is upended


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JMSF047N03+                        TTCGTCAGTANTACCCGTAGTCATTTTCTTATAAATGGCAGAGAGGA
                      ____________________________________________________________
consensus                          TTCGTCAGTANTACCCGTAGTCATTTTCTTATAAATGGCAGAGAGGA
 
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JMSF047N03+           CGTCAAAAGGGAGTTGATTCTCGAACAGAAGCATGTCTTCACGAGCTTTCTTCCCTTCAA
                      ____________________________________________________________
consensus             CGTCAAAAGGGAGTTGATTCTCGAACAGAAGCATGTCTTCACGAGCTTTCTTCCCTTCAA
 
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JMSF030A19+                                                  TCAGANCAAACTCCACCACAA
JMSF047N03+           AGCTACGGCGGGGATCACCATTGCCGCCTTCCTTGCATTTCAGAACAAACTCCACCACAA
                      ____________________________________________________________
consensus             AGCTACGGCGGGGATCACCATTGCCGCCTTCCTTGCATTTCAGAACAAACTCCACCACAA
 
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JMSF030A19+           AGCAACCATCAAGCAACAACATGTCTACCAGCTCTTCATCAGTATGGGGGTAGGTAATTT
JMSF047N03+           AGCAACCATCAAGCAACAACATGTCTACCAGCTCTTCATCAGTATGGGGGTAGGTAATTT
                      ____________________________________________________________
consensus             AGCAACCATCAAGCAACAACATGTCTACCAGCTCTTCATCAGTATGGGGGTAGGTAATTT
 
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JMSF030A19+           CAATTTCCTTATAATAATTCTCGGCTTTGTCCAACAATTTCATCTCTGGATTCCTAAGGC
JMSF047N03+           CAATTTCCTTATAATAATTCTCGGCTTTGTCCAACAATTTCATCTCTGGATTCCTAAGGC
                      ____________________________________________________________
consensus             CAATTTCCTTATAATAATTCTCGGCTTTGTCCAACAATTTCATCTCTGGATTCCTAAGGC
 
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JMSF030A19+           ATCCCCGATACTCATCCACCGAGTGTCCCACATCCCTTTCGAGAAAAGACTTCATATATA
JMSF047N03+           ATCCCCGATACTCATCCACCGAGTGTCCCACATCCCTTTCGAGAAAAGACTTCATATATA
JMFF027H03+                                            CCCTTTCGAGAAAAGACTTCATATACA
                      ____________________________________________________________
consensus             ATCCCCGATACTCATCCACCGAGTGTCCCACATCCCTTTCGAGAAAAGACTTCATATATA
 
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JMSF030A19+           TATTCTTGTATTCCTTGTCCTTGACTTGATCAACCTCTTTAGAGTACTTGGGTCCAATGG
JMSF047N03+           TATTCTTGTATTCCTTGTCCTTGACTTGATCAACCTCTTTAGAGTACTTGGGTCCAATGG
JMFF027H03+           TATTCTTGTACTCCTTGTTCTTAACTTGATCAATTTCTTTAGAGTACTTGGGCCCGATAG
                      ____________________________________________________________
consensus             TATTCTTGTATTCCTTGTCCTTGACTTGATCAACCTCTTTAGAGTACTTGGGTCCAATGG
 
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JMSF030A19+           ATACCAAAGATGGTTTATAGAAGATGCGCTTCCTAGGATATTCTTCATAAG         
JMSF047N03+           ATACCAAAGATGGTTTATAGAAGATGCGCTTCCTAGGATATTCTTCATAAG         
JMFF027H03+           ATACCAAAGATGGTTTATAGAAGTTGCGCTTCCAAGGATATTCTTGATAAGCACCTGATA
                      ____________________________________________________________
consensus             ATACCAAAGATGGTTTATAGAAGATGCGCTTCCTAGGATATTCTTCATAAGCACCTGATA
 
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JMFF027H03+           TTTCTATTTCCTGCCAGTGAACACTAGCACCATTGATATAGTGAGGTAATTAAAAATTGA
                      ____________________________________________________________
consensus             TTTCTATTTCCTGCCAGTGAACACTAGCACCATTGATATAGTGAGGTAATTAAAAATTGA
 
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JMFF027H03+           GAATATATTCAGAATGCAAACCTTTCCATTATCAATTCCTCTGTTGCTCGTTTGATCATT
                      ____________________________________________________________
consensus             GAATATATTCAGAATGCAAACCTTTCCATTATCAATTCCTCTGTTGCTCGTTTGATCATT
 
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JMFF027H03+           TAAGCTGTCTATGTCCAAAGTAACCTCATATCGCTCATCCATTCCAGTGTCACTCTGTCC
                      ____________________________________________________________
consensus             TAAGCTGTCTATGTCCAAAGTAACCTCATATCGCTCATCCATTCCAGTGTCACTCTGTCC
 
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JMFF027H03+           AAAAGAAGCCAGTAGGTCAACACTCGCAGAAGGGTCAAGATACTCATCTGCCATCCCACC
                      ____________________________________________________________
consensus             AAAAGAAGCCAGTAGGTCAACACTCGCAGAAGGGTCAAGATACTCATCTGCCATCCCACC
 
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JMFF027H03+           TGAAGAGCCTTGCTGGGATTGGGAGGTTGATCTGAGGAGAATGTTAGCCCAGTGCAAGTT
                      ____________________________________________________________
consensus             TGAAGAGCCTTGCTGGGATTGGGAGGTTGATCTGAGGAGAATGTTAGCCCAGTGCAAGTT