| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002E11 | Sequence | 282 | 003186 (10) | 742 | 003186 (10) | ref|XP_009778654.1| | 5e-126 | PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris | |||
| JMFF023C12 | Sequence | 455 | 003186 (10) | ref|XP_006364593.1| | 3e-15 | PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum] | |||||
| JMFF027D21 | Sequence | 618 | 003186 (10) | ref|XP_006364593.1| | 4e-49 | PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum] | 741 | 003186 (10) | ref|XP_009778654.1| | 1e-127 | PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris |
| JMFN039B19 | Sequence | 622 | 003186 (10) | ref|XP_009778654.1| | 2e-138 | PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris | |||||
| JMSF031I15 | Sequence | 664 | 003186 (10) | ref|XP_006364593.1| | 4e-90 | PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum] | 769 | 003186 (10) | ref|XP_009778654.1| | 1e-123 | PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris |
| JMSF042E23 | Sequence | 778 | 003186 (10) | ref|XP_006364593.1| | 8e-119 | PREDICTED: malate dehydrogenase, chloroplastic-like [Solanum tuberosum] | 748 | 003186 (10) | ref|XP_009778654.1| | 2e-114 | PREDICTED: malate dehydrogenase, chloroplastic isoform X2 [Nicotiana sylvestris |
This contig is upended
. : . : . : . : . : . :
rJMSF031I15- ATAAGAGTGCCAAAACAGGTTATATGAGGAGGATGTA
rJMSF042E23- ATGAGGAGGATGTA
____________________________________________________________
consensus ATAAGAGTGCCAAAACAGGTTATATGAGGAGGATGTA
. : . : . : . : . : . :
rJMSF031I15- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
rJMSF042E23- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
rJMFF002E11- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
rJMFF027D21- TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
____________________________________________________________
consensus TTATTGTACAACATTAGTATTATCTGTTTCTCCACAATCTGCATTTCCAGCACAAGAAAT
. : . : . : . : . : . :
rJMSF031I15- GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
rJMSF042E23- GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
rJMFF002E11- GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
rJMFF027D21- GCGTTCATCTTCTTC-CCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
____________________________________________________________
consensus GCGTTCATCTTCTTCTCCTACAAAACTGAAAGTGCTGATGCAATCCCGCAAATTTCTTAT
. : . : . : . : . : . :
rJMSF031I15- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
rJMSF042E23- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
rJMFF002E11- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
rJMFF027D21- TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
JMFN039B19+ A
____________________________________________________________
consensus TCCAATTGATACTCGAGGGCTATAGTGAATTCTAAGCAGCCACTGGCTGTTTCTGGACAA
. : . : . : . : . : . :
rJMSF031I15- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
rJMSF042E23- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
rJMFF002E11- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
rJMFF027D21- AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
JMFN039B19+ AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
____________________________________________________________
consensus AACCAATTCCCTTCTCAATGCTGGACTTCAGCTCTGGCTTTAGGGCTTCCAAGGCTGCTT
. : . : . : . : . : . :
rJMSF031I15- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
rJMSF042E23- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
rJMFF002E11- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
rJMFF027D21- GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
JMFN039B19+ GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
____________________________________________________________
consensus GTTCATACTCGGTCAGTCCTTGAAGATCAGATGAGATCAATGCCTCGACGCCATTCCTTC
. : . : . : . : . : . :
rJMSF031I15- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
rJMSF042E23- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
rJMFF002E11- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
rJMFF027D21- CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
JMFN039B19+ CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
____________________________________________________________
consensus CTAGTTTGACTCTTGATGCGAAGAATGGAAGCTCTGTGAGATCGGACTGGACGAAAGCAC
. : . : . : . : . : . :
rJMSF031I15- ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
rJMSF042E23- ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
rJMFF002E11- ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
rJMFF027D21- ACTCGTACACATCACTGTCTCCGTCTAAAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
JMFN039B19+ ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
____________________________________________________________
consensus ACTCGTACACATCACTGTCTCCGTCTAGAGCCCGGAGGGAGGACTCAACAAATCTTGCTG
. : . : . : . : . : . :
rJMSF031I15- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
rJMSF042E23- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
rJMFF002E11- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
rJMFF027D21- CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
JMFN039B19+ CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
____________________________________________________________
consensus CTGCATAGGCCATGGAGAGTGTAGCAGAGCCTGCACCGGCCTTTGCCTCGACAACTTCTG
. : . : . : . : . : . :
rJMSF031I15- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
rJMSF042E23- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
rJMFF002E11- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
rJMFF027D21- TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
JMFN039B19+ TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
____________________________________________________________
consensus TCCCTGCATTTTGGATCCTCACAGTCAGCTCCTGAATTTCTTCATCGGTGAAAGAGGTTG
. : . : . : . : . : . :
rJMSF031I15- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
rJMSF042E23- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
rJMFF002E11- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
rJMFF027D21- ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
JMFN039B19+ ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
____________________________________________________________
consensus ATGGCTTTGTTTTTGACAACAATGGCAAAATGGTAATTCCAGCATGGCCTCCAACAACAG
. : . : . : . : . : . :
rJMSF031I15- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
rJMSF042E23- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
rJMFF002E11- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
rJMFF027D21- GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
JMFN039B19+ GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
____________________________________________________________
consensus GAACATCTACATCAATGAGCCTGAGGTTTTTCTTCTGAGCGACAAATGTGTTTGCTCTGA
. : . : . : . : . : . :
rJMSF031I15- CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
rJMSF042E23- CGACATCAAGGGTGGTAACACCAAAAGAGTTTCTTGGGAATCATACACTCCCTTTTGCTT
rJMFF002E11- CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
rJMFF027D21- CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
JMFN039B19+ CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
____________________________________________________________
consensus CGACATCAAGGGTGGTAACACC-AAAGAGTTTCTTGGG-ATCATACACTCCCTTTTGCTT
. : . : . : . : . : . :
rJMSF031I15- CANAACTTCTGCAG
rJMSF042E23- CAGANCTTCTGCAG
rJMFF002E11- CAGAACTTCTGCAG
rJMFF027D21- CAGAACTTCTGCAGCAAT
JMFN039B19+ CAGAACTTCTGCAGCAATTGGGACAGTAGAGTTGACAGGATTACTGATAATGTGGATGAA
JMSF042E23+ TGCAGCAATTGGGACAGTAGAGTTGACAGGATTACTGATAATGTGGATGAA
____________________________________________________________
consensus CAGAACTTCTGCAGCAATTGGGACAGTAGAGTTGACAGGATTACTGATAATGTGGATGAA
. : . : . : . : . : . :
JMFN039B19+ GGCATCGGGGCAGTTATCAGCAA
JMSF042E23+ GGCATCGGGGCAGTTATCAGCAACAGCCTCAACCAAGTTCTTTACAATGTTGGCGTTTAT
____________________________________________________________
consensus GGCATCGGGGCAGTTATCAGCAACAGCCTCAACCAAGTTCTTTACAATGTTGGCGTTTAT
. : . : . : . : . : . :
JMSF042E23+ ATTGAACAGGTCATCACGTGTCATGCCTGGCTTCCTTGGAACACCAGCAGGTATGACAAC
JMSF031I15+ TGAACAGGTCATCACGTGTCATGCCTGGCTTCCTTGGAACACCAGCAGGTATGACAAC
____________________________________________________________
consensus ATTGAACAGGTCATCACGTGTCATGCCTGGCTTCCTTGGAACACCAGCAGGTATGACAAC
. : . : . : . : . : . :
JMSF042E23+ CACATTGACATCTTTCAAACAGTTGGCTAATTCAGAAGCTCCAGTGAAATCTAACACCTG
JMSF031I15+ CACATTGACATCTTTCAAACAGTTGGCTAATTCAGAAGCTCCAGTGAAATCTAACACCTG
____________________________________________________________
consensus CACATTGACATCTTTCAAACAGTTGGCTAATTCAGAAGCTCCAGTGAAATCTAACACCTG
. : . : . : . : . : . :
JMSF042E23+ GGAGGGAGTGTTGCAGTGGCTAAGATCTGCTGCAACTCCCTTAACATTCGCTATATCATA
JMSF031I15+ GGAGGGAGTGTTGCAGTGGCTAAGATCTGCTGCAACTCCCTTAACATTCGCTATATCATA
JMFF027D21+ AACATTCGCTATATCATA
____________________________________________________________
consensus GGAGGGAGTGTTGCAGTGGCTAAGATCTGCTGCAACTCCCTTAACATTCGCTATATCATA
. : . : . : . : . : . :
JMSF042E23+ AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
JMSF031I15+ AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
JMFF027D21+ AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
____________________________________________________________
consensus AAGATGCAAATCTGAAACAAGCGGTGACATCTTGATCAGAAGAGCTAGTGGCTGCCCTAT
. : . : . : . : . : . :
JMSF042E23+ GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
JMSF031I15+ GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
JMFF027D21+ GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
____________________________________________________________
consensus GCCTCCACCAGCCCCAAGAACAGCAACTTTGTATGATGCCTGAGGTTGAACACAGTTCAG
. : . : . : . : . : . :
JMSF042E23+ TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
JMSF031I15+ TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
JMFF023C12+ CTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
JMFF027D21+ TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
____________________________________________________________
consensus TGATCTATGGCTTTCCTTTTGGGCCCTTAGAGTGAAGGATTGGCGAAGAGCTAAAGTGCT
. : . : . : . : . : . :
JMSF042E23+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
JMSF031I15+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
JMFF023C12+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
JMFF027D21+ TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
____________________________________________________________
consensus TTCCCTCCCGAAAAATGATGATGCTGATTCACACCTCACAGATGCCTCTGCCTTAAGGCC
. : . : . : . : . : . :
JMSF042E23+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMSF031I15+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMFF023C12+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMFF002E11+ GTTCCCAAGGCAACCCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
JMFF027D21+ ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
____________________________________________________________
consensus ATTGAAGTTCCCAAGGCAAACCCTAGAGTTGAACTTCAAATTTAAAGCCTTAGATTGTGA
. : . : . : . : . : . :
JMSF042E23+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMSF031I15+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMFF023C12+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMFF002E11+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
JMFF027D21+ GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
____________________________________________________________
consensus GATTGAACTACCCTTGGGCCTAGCAGATGAGGTTGACCCAAAAGATAGAGCAGTAGTTGA
. : . : . : . : . : . :
JMSF042E23+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMSF031I15+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMFF023C12+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMFF002E11+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
JMFF027D21+ TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
____________________________________________________________
consensus TGTTGCTGCCATTTCTCACCCTTCTTAATGGAGCTGAGCGGGAAGGAGTTGATGAGTAAA
. : . : . : . : . : . :
JMSF042E23+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMSF031I15+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMFF023C12+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMFF002E11+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
JMFF027D21+ ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
____________________________________________________________
consensus ATGAGGTGAATTGGTTGGAGAGCTCAGACACAGCGCTTTAGTTTCTCCGTCGAATGGCCT
. : . : . : . : . : . :
JMSF042E23+ CCCTC
JMSF031I15+ CCCTC
JMFF023C12+ CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGTACGGTTGGCGAA
JMFF002E11+ CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGT
JMFF027D21+ CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGTACGGTTGGCGAA
____________________________________________________________
consensus CCCTCGCTCAAATCCCCTGGCGGGCGATCGGCTGTTAGGTCAAAGCGTACGGTTGGCGAA
. : . : . : . : . : . :
JMFF023C12+ TCTACTCTCAAGATTCTTCGACAACGAGGCGAAAGACGTGGGCCGTCAGTTTCGGTGAGA
JMFF027D21+ TCTACTCTCAAGATTCTTCGACAACGAGGCGAAAGACGTGGGCCGTCAGTTTCGGTGAGA
____________________________________________________________
consensus TCTACTCTCAAGATTCTTCGACAACGAGGCGAAAGACGTGGGCCGTCAGTTTCGGTGAGA