| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF025O11 | Sequence | 458 | 003180 (6) | ref|XP_009611554.1| | 7e-08 | PREDICTED: putative SERF-like protein [Nicotiana tomentosiformis] | 431 | 003180 (6) | ref|XP_009611554.1| | 6e-08 | PREDICTED: putative SERF-like protein [Nicotiana tomentosiformis] |
| JMFF028G04 | Sequence | 477 | 003180 (6) | ref|XP_009611554.1| | 9e-08 | PREDICTED: putative SERF-like protein [Nicotiana tomentosiformis] | |||||
| JMFF035N11 | Sequence | 477 | 003180 (6) | ref|XP_009611554.1| | 9e-08 | PREDICTED: putative SERF-like protein [Nicotiana tomentosiformis] | |||||
| JMFN029L08 | Sequence | 451 | 003180 (6) | ref|XP_009611554.1| | 1e-07 | PREDICTED: putative SERF-like protein [Nicotiana tomentosiformis] | |||||
| JMSF006N04 | Sequence | 341 | 003180 (6) | ref|XP_009611554.1| | 2e-05 | PREDICTED: putative SERF-like protein [Nicotiana tomentosiformis] | 422 | 008431 (3) | |||
This contig is upended
. : . : . : . : . : . :
JMFN029L08+ TTGTT
____________________________________________________________
consensus TTGTT
. : . : . : . : . : . :
JMFN029L08+ TTTTTGTGGXXXXXXXXXXXXXXXXXXXXXXXXXXCAAAGTTCAAACCATGTTGTACAAA
JMFF035N11+ CAAAGTTCAAACCATGTTGTACAAA
JMFF028G04+ CAAAGTTCAAACCATGTTGTACAAA
rJMFF025O11- TGTTGTACAAA
JMFF025O11+ CAAAGTTCAAACCATGTTGTACAAA
____________________________________________________________
consensus TTTTTGTGGNNNNNNNNNNNNNNNNNNNNNNNNNNCAAAGTTCAAACCATGTTGTACAAA
. : . : . : . : . : . :
JMFN029L08+ TCTTCACTTGGGCAAATCCAACTAATCCAAAGACAAATGTAAAAGGACCATATCCAAAAG
JMFF035N11+ TCTTCACTTGGGCAAATCCAACTAATCCAAAGACAAATGTAAAAGGACCATATCCAAAAG
JMFF028G04+ TCTTCACTTGGGCAAATCCAACTAATCCAAAGACAAATGTAAAAGGACCATATCCAAAAG
rJMFF025O11- TCTTCACTTGGGCAAATCCAACTAATCCAAAGACAAATGTAAAAGGACCATATCCAAAAG
JMFF025O11+ TCTTCACTTGGGCAAATCCAACTAATCCAAAGACAAATGTAAAAGGACCATATCCAAAAG
____________________________________________________________
consensus TCTTCACTTGGGCAAATCCAACTAATCCAAAGACAAATGTAAAAGGACCATATCCAAAAG
. : . : . : . : . : . :
JMFN029L08+ ACAAATGTAAAAGGAGTACAAGGATTACACGGAATTAGCAGATGGAGAAAGTTGACGAGA
JMFF035N11+ ACAAATGTAAAAGGAGTACAAGGATTACACGGAATTAGCAGATGGAGAAAGTTGACGAGA
JMFF028G04+ ACAAATGTAAAAGGAGTACAAGGATTACACGGAATTAGCAGATGGAGAAAGTTGACGAGA
rJMFF025O11- ACAAATGTAAAAGGAGTACAAGGATTACACGGAATTAGCAGATGGAGAAAGTTGACGAGA
JMSF006N04+ AAGGAGTACAAGGATTACACGGAATTAGCAGATGGAGAAAGTTGACGAGA
JMFF025O11+ ACAAATGTAAAAGGAGTACAAGGATTACACGGAATTAGCAGATGGAGAAAGTTGACGAGA
____________________________________________________________
consensus ACAAATGTAAAAGGAGTACAAGGATTACACGGAATTAGCAGATGGAGAAAGTTGACGAGA
. : . : . : . : . : . :
JMFN029L08+ TAACAGGCCCTATAACACCGAACAAGTTCTACTTCTTCGTGTCTTTATTCCCAGTGCTGC
JMFF035N11+ TAACAGGCCCTATAACACCGAACAAGTTCTACTTCTTCGTGTCTTTATTCCCAGTGCTGC
JMFF028G04+ TAACAGGCCCTATAACACCGAACAAGTTCTACTTCTTCGTGTCTTTATTCCCAGTGCTGC
rJMFF025O11- TAACAGGCCCTATAACACCGAACAAGTTCTACTTCTTCGTGTCTTTATTCCCAGTGCTGC
JMSF006N04+ TAACAGGCCCTATAACACCGAACAAGTTCTACTTCTTCGTGTCTTTATTCCCAGTGCTGC
JMFF025O11+ TAACAGGCCCTATAACACCGAACAAGTTCTACTTCTTCGTGTCTTTATTCCCAGTGCTGC
____________________________________________________________
consensus TAACAGGCCCTATAACACCGAACAAGTTCTACTTCTTCGTGTCTTTATTCCCAGTGCTGC
. : . : . : . : . : . :
JMFN029L08+ TACCCCCTGCAGCTTGTCCTGCTTTCTTCGCAGCCTTTTCTTGAAGAGCTTTTGCATCCC
JMFF035N11+ TACCCCCTGCAGCTTGTCCTGCTTTCTTCGCAGCCTTTTCTTGAAGAGCTTTTGCATCCC
JMFF028G04+ TACCCCCTGCAGCTTGTCCTGCTTTCTTCGCAGCCTTTTCTTGAAGAGCTTTTGCATCCC
rJMFF025O11- TACCCCCTGCAGCTTGTCCTGCTTTCTTCGCAGCCTTTTCTTGAAGAGCTTTTGCATCCC
JMSF006N04+ TACCCCCTGCAGCTTGTCCTGCTTTCTTCGCAGCCTTTTCTTGAAGAGCTTTTGCATCCC
JMFF025O11+ TACCCCCTGCAGCTTGTCCTGCTTTCTTCGCAGCCTTTTCTTGAAGAGCTTTTGCATCCC
____________________________________________________________
consensus TACCCCCTGCAGCTTGTCCTGCTTTCTTCGCAGCCTTTTCTTGAAGAGCTTTTGCATCCC
. : . : . : . : . : . :
JMFN029L08+ TTTCACGGCGCTGTTCTGGAGTCAGACCATCATCCTTGCCTTTAACCTTGCCGGCCTTCC
JMFF035N11+ TTTCACGGCGCTGTTCTGGAGTCAGACCATCATCCTTGCCTTTAACCTTGCCGGCCTTCC
JMFF028G04+ TTTCACGGCGCTGTTCTGGAGTCAGACCATCATCCTTGCCTTTAACCTTGCCGGCCTTCC
rJMFF025O11- TTTCACGGCGCTGTTCTGGAGTCAGACCATCATCCTTGCCTTTAACCTTGCCGGCCTTCC
JMSF006N04+ TTTCACGGCGCTGTTCTGGAGTCAGACCATCATCCTTGCCTTTAACCTTGCCGGCCTTCC
JMFF025O11+ TTTCACGGCGCTGTTCTGGAGTCAGACCATCATCCTTGCCTTTAACCTTGCCGGCCTTCC
____________________________________________________________
consensus TTTCACGGCGCTGTTCTGGAGTCAGACCATCATCCTTGCCTTTAACCTTGCCGGCCTTCC
. : . : . : . : . : . :
JMFN029L08+ CCGTCCTAGCCTGAGCTCTTTCCCTGTCTTTCTCCCTCTGGTTTCCGCGAGTCATTGTTG
JMFF035N11+ CCGTCCTAGCCTGAGCTCTTTCCCTGTCTTTCTCCCTCTGGTTTCCGCGAGTCATTGTTG
JMFF028G04+ CCGTCCTAGCCTGAGCTCTTTCCCTGTCTTTCTCCCTCTGGTTTCCGCGAGTCATTGTTG
rJMFF025O11- CCGTCCTAGCCTGAGCTCTTTCCCTGTCTTTCTCCCTCTGGTTTCCGCGAGTCATTGTTG
JMSF006N04+ CCGTCCTAGCCTGAGCTCTTTCCCTGTCTTTCTCCCTCTGGTTTC--CGAGTCATTGTTG
JMFF025O11+ CCGTCCTAGCCTGAGCTCTTTCCCTGTCTTTCTCCCTCTGGTTTCCGCGAGTCATTGTTG
____________________________________________________________
consensus CCGTCCTAGCCTGAGCTCTTTCCCTGTCTTTCTCCCTCTGGTTTCCGCGAGTCATTGTTG
. : . : . : . : . : . :
JMFN029L08+ ATAACCCAAGAAAAAAGTCTCCGGAG
JMFF035N11+ ATAACCCAAGAAAAAAGTCTCCGGAGGAAGAGAATCTGTACAGCGACGATTTGAG
JMFF028G04+ ATAACCCAAGAAAAAAGTCTCCGGAGGAAGAGAATCTGTACAGCGACGATTTGAG
rJMFF025O11- ATAACCCAAGAAAAAAGTCTCCGGAGGAAGAGAATCTGTACAGCGACGATTTGAG
JMSF006N04+ ATAACCCAAGAAAAAAGTCTCCGGAGGAAGAGAATCTGTACAGCGACGATTT
JMFF025O11+ ATAACCCAAGAAAAAAGTCTCCGGAGGAAGAGAATCTGTACAGCGACGATTTGAGAAAAT
____________________________________________________________
consensus ATAACCCAAGAAAAAAGTCTCCGGAGGAAGAGAATCTGTACAGCGACGATTTGAGAAAAT