Contig 003175:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF020C02Sequence507003175 (6)ref|XP_009803154.1|1e-55PREDICTED: PRA1 family protein B4-like [Nicotiana sylvestris]671003175 (6)ref|XP_004246300.1|3e-12PREDICTED: PRA1 family protein B4-like [Solanum lycopersicum]
JMFF025E12Sequence595003175 (6)ref|XP_009803154.1|1e-61PREDICTED: PRA1 family protein B4-like [Nicotiana sylvestris]696003175 (6)ref|XP_009803154.1|5e-14PREDICTED: PRA1 family protein B4-like [Nicotiana sylvestris]
JMFN020A07Sequence605003175 (6)ref|XP_009597143.1|3e-68PREDICTED: PRA1 family protein B4-like [Nicotiana tomentosiformis]
JMSF049H13Sequence715003175 (6)ref|XP_009803154.1|1e-75PREDICTED: PRA1 family protein B4-like [Nicotiana sylvestris]768019450

Alignment

This contig is upended


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rJMFF020C02-                                                ACTCCCACAAAGCAAATTCACA
rJMFF025E12-                                                ACTCCCACAAAGCAAATTCACA
                      ____________________________________________________________
consensus                                                   ACTCCCACAAAGCAAATTCACA
 
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rJMFF020C02-          TAAGATGAATGGCAGGAGTGCCAAACAAATGGCCTATCAACACTCTACATCAAAAGTCTC
rJMFF025E12-          TAAGATGAATGGCAGGAGTGCCAAACAAATGGCCTATCAACACTCTACATCAAAAGTCTC
                      ____________________________________________________________
consensus             TAAGATGAATGGCAGGAGTGCCAAACAAATGGCCTATCAACACTCTACATCAAAAGTCTC
 
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rJMFF020C02-          AAACCTCCCGATTCACTTCTTATAAAGTGCAAATAGAAGACCATTACACATAATATGCTA
rJMFF025E12-          AAACCTCCCGATTCACTTCTTATAAAGTGCAAATAGAAGACCATTACACATAATATGCTA
                      ____________________________________________________________
consensus             AAACCTCCCGATTCACTTCTTATAAAGTGCAAATAGAAGACCATTACACATAATATGCTA
 
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rJMFF020C02-          AAAGATAGCAGTGACAAATCTACAAACAAGACTAGTATGCATTACAGTTAATAGACAGCA
rJMFF025E12-          AAAGATAGCAGTGACAAATCTACAAACAAGACTAGTATGCATTACAGTTAATAGACAGCA
                      ____________________________________________________________
consensus             AAAGATAGCAGTGACAAATCTACAAACAAGACTAGTATGCATTACAGTTAATAGACAGCA
 
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rJMFF020C02-          CCACTAAATCCAAGAATGATCAATTTTTATGGTGTCTGCACATAGGTGTGCTATACAAAG
rJMFF025E12-          CCACTAAATCCAAGAATGATCAATTTTTATGGTGTCTGCACATAGGTGTGCTATACAAAG
                      ____________________________________________________________
consensus             CCACTAAATCCAAGAATGATCAATTTTTATGGTGTCTGCACATAGGTGTGCTATACAAAG
 
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rJMFF020C02-          AGCAATAGACTGAGCTTTTATGTCCATATATGCCGTAAACTCTTGATGTTTATAAGCAAA
rJMFF025E12-          AGCAATAGACTGAGCTTTTATGTCCATATATGCCGTAAACTCTTGATGTTTATAAGCAAA
                      ____________________________________________________________
consensus             AGCAATAGACTGAGCTTTTATGTCCATATATGCCGTAAACTCTTGATGTTTATAAGCAAA
 
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rJMFF020C02-          AAACCAAGAGAACAAATTGCGAGATCAAACTCTGGTCACAGCTTACAGATTGATCTGGAA
rJMFF025E12-          AAACCAAGAGAACAAATTGCGAGATCAAACTCTGGTCACAGCTTACAGATTGATCTGGAA
                      ____________________________________________________________
consensus             AAACCAAGAGAACAAATTGCGAGATCAAACTCTGGTCACAGCTTACAGATTGATCTGGAA
 
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rJMFF020C02-          TCTGGATGGAATCCCCAAAAGAGCAGCATTGGTTTTTACGGATCGGAGATCAAAGGATCA
rJMFF025E12-          TCTGGATGGAATCCCCAAAAGAGCAGCATTGGTTTTTACGGATCGGAGATCAAAGGATCA
                      ____________________________________________________________
consensus             TCTGGATGGAATCCCCAAAAGAGCAGCATTGGTTTTTACGGATCGGAGATCAAAGGATCA
 
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rJMFF020C02-          AACGCGAGCAGCAACAGCGGGAGCAGCAACGGTAGCGGCAACGCTAGAAGCGCCGCCGGT
rJMFF025E12-          AACGCGAGCAGCAACAGCGGGAGCAGCAACGGTAGCGGCAACGCTAGAAGCGCCGCCGGT
JMSF049H13+            ACGCGAGCAGCAACAGCGGGAGCAGCAACGGTAGCGGCAACGCTAGAAGCGCCGCCGGT
                      ____________________________________________________________
consensus             AACGCGAGCAGCAACAGCGGGAGCAGCAACGGTAGCGGCAACGCTAGAAGCGCCGCCGGT
 
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rJMFF020C02-          CAAGAAAGACAGGAATCCAGTTGAAGGCGCGTCTTGCTCGTCGAGGAAGAGATCTTCAGG
rJMFF025E12-          CAAGAAAGACAGGAATCCAGTTGAAGGCGCGTCTTGCTCGTCGAGGAAGAGATCTTCAGG
JMFN020A07+                                                  GTCGAGGAAGAGATCTTCAGG
JMSF049H13+           CAAGAAAGACAGGAATCCAGTTGAAGGCGCGTCTTGCTCGTCGAGGAAGAGATCTTCAGG
                      ____________________________________________________________
consensus             CAAGAAAGACAGGAATCCAGTTGAAGGCGCGTCTTGCTCGTCGAGGAAGAGATCTTCAGG
 
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rJMFF020C02-          TTGACGGAAAGCGGCGTGGGTGCAGATAATAGCGACGCCGACCATCAATGCGGAGACGAG
rJMFF025E12-          TTGACGGAAAGCGGCGTGGGTGCAGATAATAGCGACGCCGACCATCAATGCGGAGACGAG
JMFN020A07+           TTGACGGAAAGCGGCGTGGGTGCAGATAATAGCGACGCCGACCATCAATGCGGAGACGAG
JMSF049H13+           TTGACGGAAAGCGGCGTGGGTGCAGATAATAGCGACGCCGACCATCAATGCGGAGACGAG
JMFF025E12+                GGAAAGCGGCGTGGGTGCAGATAATAGCGACGCCGACCATCAATGCGGAGACGAG
                      ____________________________________________________________
consensus             TTGACGGAAAGCGGCGTGGGTGCAGATAATAGCGACGCCGACCATCAATGCGGAGACGAG
 
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rJMFF020C02-          AACAGATCCGACGCTTGTGAGGAAAACGACGACGACTGTGGAGACGAGC           
rJMFF025E12-          AACAGATCCGACGCTTGTGAGGAAAACGACGACGACTGTGGAGACGAGCAGGGCACCGAG
JMFN020A07+           AACAGATCCGACGCTTGTGAGGAAAACGACGACGACTGTGGAGACGAGCAGGGCACCGAG
JMSF049H13+           AACAGATCCGACGCTTGTGAGGAAAACGACGACGACTGTGGAGACGAGCAGGGCACCGAG
JMFF020C02+                                            GACTGTGGAGACGAGCAGGGCACCGAG
JMFF025E12+           AACAGATCCGACGCTTGTGAGGAAAACGACGACGACTGTGGAGACGAGCAGGGCACCGAG
                      ____________________________________________________________
consensus             AACAGATCCGACGCTTGTGAGGAAAACGACGACGACTGTGGAGACGAGCAGGGCACCGAG
 
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rJMFF025E12-          GGTTTCGCGCTCGG                                              
JMFN020A07+           GGTTTCGCGCTCGGAGAATTGGCGGCCGAAGAGGACGAGAGGCGGATCGGAGGGGCGGAA
JMSF049H13+           GGTTTCGCGCTCGGAGAATTGGCGGCCGAAGAGGACGAGAGGCGGATCGGAGGGGCGGAA
JMFF020C02+           GGTTTCGCGCTCGGAGAATTGGCGGCCGAAGAGGACGAGAGGCGGATCGGAGGGGCGGAA
JMFF025E12+           GGTTTCGCGCTCGGAGAATTGGCGGCCGAAGAGGACGAGAGGCGGATCGGAGGGGCGGAA
                      ____________________________________________________________
consensus             GGTTTCGCGCTCGGAGAATTGGCGGCCGAAGAGGACGAGAGGCGGATCGGAGGGGCGGAA
 
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JMFN020A07+           GAGGTAGAGGAACAGCCAGGCGGCGAGAAGGGCGGAGAGGATGAGGAGGGAGAAGGGATT
JMSF049H13+           GAGGTAGAGGAACAGCCAGGCGGCGAGAAGGGCGGAGAGGATGAGGAGGGAGAAGGGATT
JMFF020C02+           GAGGTAGAGGAACAGCCAGGCGGCGAGAAGGGCGGAGAGGATGAGGAGGGAGAAGGGATT
JMFF025E12+           GAGGTAGAGGAACAGCCAGGCGGCGAGAAGGGCGGAGAGGATGAGGAGGGAGAAGGGATT
                      ____________________________________________________________
consensus             GAGGTAGAGGAACAGCCAGGCGGCGAGAAGGGCGGAGAGGATGAGGAGGGAGAAGGGATT
 
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JMFN020A07+           GGTGATGAGAGAGAAGCCGAGAACTACGGCAACCAGGGAAAGGTAGTTGATCTTGAAGTA
JMSF049H13+           GGTGATGAGAGAGAAGCCGAGAACTACGGCAACCAGGGAAAGGTAGTTGATCTTGAAGTA
JMFF020C02+           GGTGATGAGAGAGAAGCCGAGAACTACGGCAACCAGGGAAAGGTAGTTGATCTTGAAGTA
JMFF025E12+           GGTGATGAGAGAGAAGCCGAGAACTACGGCAACCAGGGAAAGGTAGTTGATCTTGAAGTA
                      ____________________________________________________________
consensus             GGTGATGAGAGAGAAGCCGAGAACTACGGCAACCAGGGAAAGGTAGTTGATCTTGAAGTA
 
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JMFN020A07+           GGCGTAGTTTTTGCGGATGCGGAGAGTGGCATCGGAGACGGACTCCGGCTTCGAGAAGGC
JMSF049H13+           GGCGTAGTTTTTGCGGATGCGGAGAGTGGCATCGGAGACGGACTCCGGCTTCGAGAAGGC
JMFF020C02+           GGCGTAGTTTTTGCGGATGCGGAGAGTGGCATCGGAGACGGACTCCGGCTTCGAGAAGGC
JMFF025E12+           GGCGTAGTTTTTGCGGATGCGGAGAGTGGCATCGGAGACGGACTCCGGCTTCGAGAAGGC
                      ____________________________________________________________
consensus             GGCGTAGTTTTTGCGGATGCGGAGAGTGGCATCGGAGACGGACTCCGGCTTCGAGAAGGC
 
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JMFN020A07+           GGAGCGGTCCACGAGCTCGGCCCAGGGACGGCGGTTGGAGAGGCCGTTGCGTACGGTTTC
JMSF049H13+           GGAGCGGTCCACGAGCTCGGCCCAGGGACGGCGGTTGGAGAGGCCGTTGCGTACGGTTTC
JMFF020C02+           GGAGCGGTCCACGAGCTCGGCCCAGGGACGGCGGTTGGAGAGGCCGTTGCGTACGGTTTC
JMFF025E12+           GGAGCGGTCCACGAGCTCGGCCCAGGGACGGCGGTTGGAGAGGCCGTTGCGTACGGTTTC
                      ____________________________________________________________
consensus             GGAGCGGTCCACGAGCTCGGCCCAGGGACGGCGGTTGGAGAGGCCGTTGCGTACGGTTTC
 
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JMFN020A07+           GGTGATGTGGTTTATGAAGGCACGGAAAGCAGGGGTGGGTGCTACTACAACGGTGTCGGA
JMSF049H13+           GGTGATGTGGTTTATGAAGGCACGGAAAGCAGGGGTGGGTGCTACTACAACGGTGTCGGA
JMFF020C02+           GGTGATGTGGTTTATGAAGGCACGGAAAGCAGGGGTGGGTGCTACTACAACGGTGTCGGA
JMFF025E12+           GGTGATGTGGTTTATGAAGGCACGGAAAGCAGGGGTGGGTGCTACTACAACGGTGTCGGA
                      ____________________________________________________________
consensus             GGTGATGTGGTTTATGAAGGCACGGAAAGCAGGGGTGGGTGCTACTACAACGGTGTCGGA
 
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JMFN020A07+           GGAGGCCACGGCGGTGGTGGTTTGAGCATTAGAGATGGGAAGAACTGCCGGCGACGAATT
JMSF049H13+           GGAGGCCACGGCGGTGGTGGTTTGAGCATTAGAGATGGGAAGAACTGCCGGCGACGAATT
JMFF020C02+           GGAGGCCACGGCGGTGGTGGTTTGAGCATTAGAGATGGGAAGAACTGCCGGCGACGAATT
JMFF025E12+           GGAGGCCACGGCGGTGGTGGTTTGAGCATTAGAGATGGGAAGAACTGCCGGCGACGAATT
                      ____________________________________________________________
consensus             GGAGGCCACGGCGGTGGTGGTTTGAGCATTAGAGATGGGAAGAACTGCCGGCGACGAATT
 
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JMFN020A07+           GGCCATTGATTCAGCTTGATTCTGAGATTCAAAAGAGGGTTTAG                
JMSF049H13+           GGCCATTGATTCAGCTTGATTCTGAGATTCAAAAGAGGGTTTAGGTTATAGAGA      
JMFF020C02+           GGCCATTGATTCAGCTTGATTCTGAGATTCAAAAGAGGGTTTAGGTTATAGAGA      
JMFF025E12+           GGCCATTGATTCAGCTTGATTCTGAGATTCAAAAGAGGGTTTAGGTTATAGAGACGAAAT
                      ____________________________________________________________
consensus             GGCCATTGATTCAGCTTGATTCTGAGATTCAAAAGAGGGTTTAGGTTATAGAGACGAAAT