Contig 003174:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF024O23Sequence548003174 (2)ref|XP_009595950.1|2e-61PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Nicotiana tomentosi690003174 (2)ref|XP_004238472.1|2e-129PREDICTED: chlorophyll a-b binding protein of LHCII type 1 [Solanum lycopersicu

Alignment

This contig is upended


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rJMFF024O23-                                 GTATATGATAAGGTTGGATATTCACATATAGATCTGA
                      ____________________________________________________________
consensus                                    GTATATGATAAGGTTGGATATTCACATATAGATCTGA
 
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rJMFF024O23-          CAAAATTCTATGGCATTTACAAAATAATGTATTGTACTTATAGAGAACTTAGAGCAGAAA
                      ____________________________________________________________
consensus             CAAAATTCTATGGCATTTACAAAATAATGTATTGTACTTATAGAGAACTTAGAGCAGAAA
 
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rJMFF024O23-          ACAAGTTATTGTGGAAGGGGTCTGAGATGTGTTCCAAGAGGTTCTGCAAAGGGCCTTTAC
                      ____________________________________________________________
consensus             ACAAGTTATTGTGGAAGGGGTCTGAGATGTGTTCCAAGAGGTTCTGCAAAGGGCCTTTAC
 
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rJMFF024O23-          CTGTAACAGCTGCTTGAGCGTAAAAGCCTAACCAGGCAACCATAGCTAACCGCCCGTTTT
                      ____________________________________________________________
consensus             CTGTAACAGCTGCTTGAGCGTAAAAGCCTAACCAGGCAACCATAGCTAACCGCCCGTTTT
 
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rJMFF024O23-          TAATTTCTTTCACCTTTAAATCTTCAAATGCAACAGGGTCCTTGGATAGATTCAAAGGAT
                      ____________________________________________________________
consensus             TAATTTCTTTCACCTTTAAATCTTCAAATGCAACAGGGTCCTTGGATAGATTCAAAGGAT
 
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rJMFF024O23-          CAAAAAGAATGCCTCCAGGATAATTTATATCACCTGGCAAGTAAATTCCCAAAGGTTCTA
                      ____________________________________________________________
consensus             CAAAAAGAATGCCTCCAGGATAATTTATATCACCTGGCAAGTAAATTCCCAAAGGTTCTA
 
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rJMFF024O23-          ATGCTTCAATCCCACAATATCTGGCATATTCCGGGCCAACCATCAGAAGAACTTGGCAAA
                      ____________________________________________________________
consensus             ATGCTTCAATCCCACAATATCTGGCATATTCCGGGCCAACCATCAGAAGAACTTGGCAAA
 
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rJMFF024O23-          CAGCTATGACAAAGACCCCTTGGCTTCCAGCAAAATGGAATCCTGGGATCCCCAAGTAGT
                      ____________________________________________________________
consensus             CAGCTATGACAAAGACCCCTTGGCTTCCAGCAAAATGGAATCCTGGGATCCCCAAGTAGT
 
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rJMFF024O23-          CAAGTGTGTCTCCCTTTAGTTTTGAATAGCCCACACGCCACCAAACAGGTTCTACAAATT
                      ____________________________________________________________
consensus             CAAGTGTGTCTCCCTTTAGTTTTGAATAGCCCACACGCCACCAAACAGGTTCTACAAATT
 
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rJMFF024O23-          GAAATGCTCCTGTCAGGTCTAACAGTTCTGGAATCAATGCACCAAGAGCAGCGAGCATAG
JMFF024O23+                                                               GAGCATAG
                      ____________________________________________________________
consensus             GAAATGCTCCTGTCAGGTCTAACAGTTCTGGAATCAATGCACCAAGAGCAGCGAGCATAG
 
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rJMFF024O23-          CCCACCGTGCATGCAATATCTCAAAATTGAAGTACTTTTGAAGGGCTATTGGATCCTTGC
JMFF024O23+           CCCACCGTGCATGCAATATCTCAAAATTGAAGTACTTTTGAAGGGCTATTGGATCCTTGC
                      ____________________________________________________________
consensus             CCCACCGTGCATGCAATATCTCAAAATTGAAGTACTTTTGAAGGGCTATTGGATCCTTGC
 
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rJMFF024O23-          TTAAACCTGCAATATCAAAGCTATAATCTCCAGGCAGCTCTCCAGTAAGATAA       
JMFF024O23+           TTAAACCTGCAATATCAAAGCTATAATCTCCAGGCAGCTCTCCAGTAAGATAAGAAGGAT
                      ____________________________________________________________
consensus             TTAAACCTGCAATATCAAAGCTATAATCTCCAGGCAGCTCTCCAGTAAGATAAGAAGGAT
 
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JMFF024O23+           AGTCATATGGGATTGGACCAAGCCAACGAGGGCGAGCTTCTCCATACCACATGCTATCCT
                      ____________________________________________________________
consensus             AGTCATATGGGATTGGACCAAGCCAACGAGGGCGAGCTTCTCCATACCACATGCTATCCT
 
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JMFF024O23+           CTCTTGCTGTTTCAGCAAGCGCCTTAAACTTGGCAGAATCGTCGACGGCAGCCTTTTTTC
                      ____________________________________________________________
consensus             CTCTTGCTGTTTCAGCAAGCGCCTTAAACTTGGCAGAATCGTCGACGGCAGCCTTTTTTC
 
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JMFF024O23+           TCTCCTCCAATCGTCTCCGAAGTGTCTCCCCAAAGCTACTGTTAGCTATGGCTTTAACAG
                      ____________________________________________________________
consensus             TCTCCTCCAATCGTCTCCGAAGTGTCTCCCCAAAGCTACTGTTAGCTATGGCTTTAACAG
 
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JMFF024O23+           CAGTGAAGGGGATTGCGGAGAAGACCAAAACGCCGGCAAGCTCTTGCCATGAAGCTTCGA
                      ____________________________________________________________
consensus             CAGTGAAGGGGATTGCGGAGAAGACCAAAACGCCGGCAAGCTCTTGCCATGAAGCTTCGA
 
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JMFF024O23+           TGCGTGGAAAGGATTTGGCAATGGTGCGGGTGGACTTACGAATGGAATGACCGGCGCGTC
                      ____________________________________________________________
consensus             TGCGTGGAAAGGATTTGGCAATGGTGCGGGTGGACTTACGAATGGAATGACCGGCGCGTC
 
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JMFF024O23+           GATTGGTAGAGATGAAACTCGCGGAGTGAAATGAAGACGAAGATGACGAAAGAAGCTCCA
                      ____________________________________________________________
consensus             GATTGGTAGAGATGAAACTCGCGGAGTGAAATGAAGACGAAGATGACGAAAGAAGCTCCA
 
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JMFF024O23+           TTCAGTTTGTGTGGCTGGTGTGATCAACGGTCTCGGGCTCTATGAGTGTCTCTGGCATCT
                      ____________________________________________________________
consensus             TTCAGTTTGTGTGGCTGGTGTGATCAACGGTCTCGGGCTCTATGAGTGTCTCTGGCATCT