Contig 003168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007H24Sequence492003168 (7)ref|XP_002313909.1|3e-73vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac736009710 (7)ref|XP_009760191.1|4e-54PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris]
JMFF022N10Sequence446003168 (7)gb|EYU37571.1|6e-15hypothetical protein MIMGU_mgv1a002851mg [Erythranthe guttata]742009710 (7)ref|XP_009760191.1|2e-55PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris]
JMFF028I24Sequence478003168 (7)ref|XP_002313909.1|1e-76vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac572009710 (7)emb|CBI22461.3|2e-23unnamed protein product [Vitis vinifera]
JMFF049M08Sequence641003168 (7)ref|XP_002313909.1|1e-112vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac599021340emb|CDO97275.1|2e-21unnamed protein product [Coffea canephora]
JMSF028N24Sequence712003168 (7)ref|XP_002313909.1|1e-105vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac638009710 (7)emb|CDO97275.1|1e-33unnamed protein product [Coffea canephora]
JMSF045H24Sequence689003168 (7)ref|XP_002313909.1|2e-76vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac735009710 (7)ref|XP_009760191.1|8e-47PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris]
JMSF046J16Sequence726003168 (7)ref|XP_002313909.1|4e-81vacuolar sorting receptor protein BP-80 [Populus trichocarpa] gb|EEE87864.1| vac704009710 (7)ref|XP_009760191.1|2e-46PREDICTED: vacuolar-sorting receptor 3-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF049M08+            TTCACAAACTTCATCAACATGTCACACTTAAAACCGCACTCATCATTACTGTTGGTCCA
JMSF028N24+                                        TAAANCCGCACTCATCATTACTGTTGGTCCA
                      ____________________________________________________________
consensus              TTCACAAACTTCATCAACATGTCACACTTAAAACCGCACTCATCATTACTGTTGGTCCA
 
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JMFF049M08+           TAGCTCAAATTCCACACGATCATCAGGATGAGGAACAGCTTCTCTCCAGTCTAAATTTAC
JMSF028N24+           TAGCTCAAATTCCACACGATCATCAGGATGAGGAACAGCTTCTCTCCAGTCTAAATTTAC
JMSF046J16+                                                                AATTTAC
                      ____________________________________________________________
consensus             TAGCTCAAATTCCACACGATCATCAGGATGAGGAACAGCTTCTCTCCAGTCTAAATTTAC
 
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JMFF028I24+                                                    CACCAAAATTCTTCTCAAT
JMFF007H24+                                          TTCAATTTNTCACCAAAATTNTTNTCAAT
JMFF049M08+           ATTTACCAAGTCTGCTCCATTAACTGCTTTCTTCAATTTCTCACCAAAATTCTTCTCAAT
JMSF028N24+           ATTTACCAAGTCTGCTCCATTAACTGCTTTCTTCAATTTCTCACCAAAATTCTTCTCAAT
JMSF045H24+                                         CTTCAATTTCTCACCAAAATTCTTCTCAAT
JMSF046J16+           ATTTACCAAGTNTGCTCCATTAACTGCTTTCTTCAATTTCTCACCAAAATTCTTCTCAAT
                      ____________________________________________________________
consensus             ATTTACCAAGTCTGCTCCATTAACTGCTTTCTTCAATTTCTCACCAAAATTCTTCTCAAT
 
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JMFF028I24+           AAGTGCAGATGGAATTGTTACATTCTCAACATATTTTGCAGCAGAAACATCCTCTTCAGG
JMFF007H24+           AAGTGCAGATGGAATTGTTACATTNTCAACATATTTTGCAGCAGAAACATCCTNTTCAGG
JMFF049M08+           AAGTGCAGATGGAATTGTTACATTCTCAACATATTTTGCAGCAGAAACATCCTCTTCAGG
JMSF028N24+           AAGTGCAGATGGAATTGTTACATTCTCAACATATTTTGCAGCAGAAACATCCTCTTCAGG
JMSF045H24+           AAGTGCAGATGGAATTGTTACATTCTCAACATATTTTGCAGCAGAAACATCCTCTTCAGG
JMSF046J16+           AAGTGCAGATGGAATTGTTACATTCTCAACATATTTTGCAGCAGAAACATCCTCTTCAGG
                      ____________________________________________________________
consensus             AAGTGCAGATGGAATTGTTACATTCTCAACATATTTTGCAGCAGAAACATCCTCTTCAGG
 
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JMFF028I24+           AGTATCCATGGTTATCAGTGGTTCTTCCATGTCATCTGCAACTAGAACAGCAGAAGCACC
JMFF007H24+           AGTATCCATGGTTATCAGTGGTTCTTCCATGTCATNTGCAACTAGAACAGCAGAAGCACC
JMFF049M08+           AGTATCCATGGTTATCAGTGGTTCTTCCATGTCATCTGCAACTAGAACAGCAGAAGCACC
JMSF028N24+           AGTATCCATGGTTATCAGTGGTTCTTCCATGTCATCTGCAACTAGAACAGCAGAAGCACC
JMSF045H24+           AGTATCCATGGTTATCAGTGGTTCTTCCATGTCATCTGCAACTAGAACAGCAGAAGCACC
JMSF046J16+           AGTATCCATGGTTATCAGTGGTTCTTCCATGTCATCTGCAACTAGAACAGCAGAAGCACC
                      ____________________________________________________________
consensus             AGTATCCATGGTTATCAGTGGTTCTTCCATGTCATCTGCAACTAGAACAGCAGAAGCACC
 
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JMFF028I24+           GGCATTCTGGGCATTCCAGACCTTCAATGCAAAAAAACAATCTCCACGATCGAGAAGGAC
JMFF007H24+           GGCATTCTGGGCATTCCAGACCTTCAATGCAAAAAAACAATCTCCACGATCGAGAAGGAC
JMFF049M08+           GGCATTCTGGGCATTCCAGACCTTCAATGCAAAAAAACAATCTCCACGATCGAGAAGGAC
JMSF028N24+           GGCATTCTGGGCATTCCAGACCTTCAATGCAAAAAAACAATCTCCACGATCGAGAAGGAC
JMSF045H24+           GGCATTCTGGGCATTCCAGACCTTCAATGCAAAAAAACAATCTCCACGATCGAGAAGGAC
JMSF046J16+           GGCATTCTGGGCATTCCAGACCTTCAATGCAAAAAAACAATCTCCACGATCGAGAAGGAC
                      ____________________________________________________________
consensus             GGCATTCTGGGCATTCCAGACCTTCAATGCAAAAAAACAATCTCCACGATCGAGAAGGAC
 
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JMFF028I24+           AAATGTAGGCAAAGAACCAGGCTTGGACTTGAAAGAAATATCGAAATCCTCAAATTTCCG
JMFF007H24+           AAATGTAGGCAAAGAACCAGGCTTGGACTTGAAAGAAATATCGAAATCCTCAAATTTCCG
JMFF049M08+           AAATGTAGGCAAAGAACCAGGCTTGGACTTGAAAGAAATATCGAAATCCTCAAATTTCCG
JMSF028N24+           AAATGTAGGCAAAGAACCAGGCTTGGACTTGAAAGAAATATCGAAATCCTCAAATTTCCG
JMSF045H24+           AAATGTAGGCAAAGAACCAGGCTTGGACTTGAAAGAAATATCGAAATCCTCAAATTTCCG
JMSF046J16+           AAATGTAGGCAAAGAACCAGGCTTGGACTTGAAAGAAATATCGAAATCCTCAAATTTCCG
                      ____________________________________________________________
consensus             AAATGTAGGCAAAGAACCAGGCTTGGACTTGAAAGAAATATCGAAATCCTCAAATTTCCG
 
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JMFF028I24+           ACAGCCCTTGCGGTTATCCTTGGGGTAAACCACAGTCCCGGACATGCTACCCCCATACTG
JMFF007H24+           ACAGCCCTTGCGGTTATCCTTGGGGTAAACCACAGTCCCGGACATGCTACCCCCATACTG
JMFF049M08+           ACAGCCCTTGCGGTTATCCTTGGGGTAAACCACAGTCCCGGACATGCTACCCCCATACTG
JMSF028N24+           ACAGCCCTTGCGGTTATCCTTGGGGTAAACCACAGTCCCGGACATGCTACCCCCATACTG
JMSF045H24+           ACAGCCCTTGCGGTTATCCTTGGGGTAAACCACAGTCCCGGACATGCTACCCCCATACTG
JMSF046J16+           ACAGCCCTTGCGGTTATCCTTGGGGTAAACCACAGTCCCGGACATGCTACCCCCATACTG
JMFF022N10+                                             GTCCCGGACATGCTACCCCCATACTG
                      ____________________________________________________________
consensus             ACAGCCCTTGCGGTTATCCTTGGGGTAAACCACAGTCCCGGACATGCTACCCCCATACTG
 
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JMFF028I24+           AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
JMFF007H24+           AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
JMFF049M08+           AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
JMSF028N24+           AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
JMSF045H24+           AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
JMSF046J16+           AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
JMFF022N10+           AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
                      ____________________________________________________________
consensus             AGGAATCCCAAAGTTGCCAATGGCACAATCGTAATTGCCTTTGATGTTATCCGGTGAAAG
 
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JMFF028I24+           CACCCTCAAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
JMFF007H24+           CACCCTCAAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
JMFF049M08+           CACCCTCAAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
JMSF028N24+           CACCCTCAAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
JMSF045H24+           CACCCTCGAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
JMSF046J16+           CACCCTCGAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
JMFF022N10+           CACCCTCAAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
                      ____________________________________________________________
consensus             CACCCTCAAGCTGTTCTTCTCCACCACGAACCGACCTGCCGCCGACTGGAGTAGGATCAG
 
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JMFF028I24+           CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCC                        
JMFF007H24+           CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCC                        
JMFF049M08+           CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCCTTC                     
JMSF028N24+           CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCCTTCAGAACTTCCCATTTCCTCGGA
JMSF045H24+           CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCCTTCAGAACTTCCCATTTCCTCGGA
JMSF046J16+           CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCCTTCAGAACTTCCCATTTCCTCGGA
JMFF022N10+           CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCCTTCAGAACTTCCCATTTCCTCGGA
                      ____________________________________________________________
consensus             CAGCAGAAACCCTAGCAAGATTACACCTTTGGATCCTTCAGAACTTCCCATTTCCTCGGA
 
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JMSF028N24+           TTTCAAATAGAATAATGCGGGAGATAGATTGACGGAACAAGGCAGAATCTAGAAGCTATA
JMSF045H24+           TTTCAAATAGAATAATGCGGGAGATAGATTGACGGAACAAGGCAGAATCTAGAAGCTATA
JMSF046J16+           TTTCAAATAGAATAATGCGGGAGATAGATTGACGGAACAAGGCAGAATCTAGAAGCTATA
JMFF022N10+           TTTCAAATAGAATAATGCGGGAGATAGATTGACGGAACAAGGCAGAATCTAGAAGCTATA
                      ____________________________________________________________
consensus             TTTCAAATAGAATAATGCGGGAGATAGATTGACGGAACAAGGCAGAATCTAGAAGCTATA
 
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JMSF028N24+           TCGATTAGGAAATTTCCC                                          
JMSF045H24+           TCGATTAGGAAATTTCCCGCTTTAGGGTTCCTTCTGCGTGTTTGTATCCCCTTACAGTTT
JMSF046J16+           TCGATTAGGAAATTTCCCGCTTTAGGGTTCCTTCTGCGTGTTTGTATCCCCTTACAGTTT
JMFF022N10+           TCGATTAGGAAATTTCCCGCTTTAGGGTTCCTTCTGCGTGTTTGTATCCCCTTACAGTTT
                      ____________________________________________________________
consensus             TCGATTAGGAAATTTCCCGCTTTAGGGTTCCTTCTGCGTGTTTGTATCCCCTTACAGTTT
 
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JMSF045H24+           CTTCTGCAGTGATTGATAGTGATCTGACTTCTGAGTGAATCAATTCTCTACAAATT    
JMSF046J16+           CTTCTGCAGTGATTGATAGTGATCTGACTTCTGAGTGAATCAATTCTCTACAAATT    
JMFF022N10+           CTTCTGCAGTGATTGATAGTGATCTGACTTCTGAGTGAATCAATTCTCTACAAATTTCAA
                      ____________________________________________________________
consensus             CTTCTGCAGTGATTGATAGTGATCTGACTTCTGAGTGAATCAATTCTCTACAAATTTCAA
 
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JMFF022N10+           TAATTTTCTCTCTGTATCCAAATTTTTATTTTGACAACACTCAAACAGTACGCAGTGGTT
                      ____________________________________________________________
consensus             TAATTTTCTCTCTGTATCCAAATTTTTATTTTGACAACACTCAAACAGTACGCAGTGGTT