Contig 003167:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M05Sequence526003167 (3)ref|XP_009590876.1|4e-55PREDICTED: vacuolar amino acid transporter 1-like [Nicotiana tomentosiformis]698006874 (4)ref|XP_009773622.1|1e-68PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Nicotiana sylvest
JMFF022M22Sequence529003167 (3)ref|XP_009590876.1|4e-55PREDICTED: vacuolar amino acid transporter 1-like [Nicotiana tomentosiformis]757006874 (4)ref|XP_009590876.1|6e-101PREDICTED: vacuolar amino acid transporter 1-like [Nicotiana tomentosiformis]
JMFF027J13Sequence541003167 (3)ref|XP_009590876.1|7e-58PREDICTED: vacuolar amino acid transporter 1-like [Nicotiana tomentosiformis]624006874 (4)ref|XP_009773622.1|6e-54PREDICTED: vacuolar amino acid transporter 1-like isoform X2 [Nicotiana sylvest

Alignment

This contig is upended


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JMFF027J13+                                                                   GTTT
                      ____________________________________________________________
consensus                                                                     GTTT
 
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JMFF021M05+                      CAATCCCCCATAGCTCTAACTTCAAATTTGGTATCAAGTAGTCCAGATT
JMFF027J13+           CCCACCAATCACAATCCCCCATAGCTCTAACTTCAAATTTGGTATCAAGTAGTCCAGATT
JMFF022M22+                      CAATCCCCCATAGCTCTAACTTCAAATTTGGTATCAAGTAGTCCAGATT
                      ____________________________________________________________
consensus             CCCACCAATCACAATCCCCCATAGCTCTAACTTCAAATTTGGTATCAAGTAGTCCAGATT
 
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JMFF021M05+           ATCTCCTTCTAGGATCAAGAAACCCGTGGCCACCATGTAAAGCTCCAAGTTCATAACAAT
JMFF027J13+           ATCTCCTTCTAGGATCAAGAAACCCGTGGCCACCATGTAAAGCTCCAAGTTCATAACAAT
JMFF022M22+           ATCTCCTTCTAGGATCAAGAAACCCGTGGCCACCATGTAAAGCTCCAAGTTCATAACAAT
                      ____________________________________________________________
consensus             ATCTCCTTCTAGGATCAAGAAACCCGTGGCCACCATGTAAAGCTCCAAGTTCATAACAAT
 
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JMFF021M05+           GGATACCACTGTTCTTCCCACACTTCCAAACGCACGCTCACCAATGTCTGGGTAGCTCTT
JMFF027J13+           GGATACCACTGTTCTTCCCACACTTCCAAACGCACGCTCACCAATGTCTGGGTAGCTCTT
JMFF022M22+           GGATACCACTGTTCTTCCCACACTTCCAAACGCACGCTCACCAATGTCTGGGTAGCTCTT
                      ____________________________________________________________
consensus             GGATACCACTGTTCTTCCCACACTTCCAAACGCACGCTCACCAATGTCTGGGTAGCTCTT
 
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JMFF021M05+           TATCCTACAATCCATCACCATGCACCTTTGAATTAGTAAGCCTGTGTAGAAGGTTGATGC
JMFF027J13+           TATCCTACAATCCATCACCATGCACCTTTGAATTAGTAAGCCTGTGTAGAAGGTTGATGC
JMFF022M22+           TATCCTACAATCCATCACCATGCACCTTTGAATTAGTAAGCCTGTGTAGAAGGTTGATGC
                      ____________________________________________________________
consensus             TATCCTACAATCCATCACCATGCACCTTTGAATTAGTAAGCCTGTGTAGAAGGTTGATGC
 
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JMFF021M05+           CGCGATTATCAACAGAAAGAACAAGCTCAACCATCCTCCACACGCCAATGCATATGGGAC
JMFF027J13+           CGCGATTATCAACAGAAAGAACAAGCTCAACCATCCTCCACACGCCAATGCATATGGGAC
JMFF022M22+           CGCGATTATCAACAGAAAGAACAAGCTCAACCATCCTCCACACGCCAATGCATATGGGAC
                      ____________________________________________________________
consensus             CGCGATTATCAACAGAAAGAACAAGCTCAACCATCCTCCACACGCCAATGCATATGGGAC
 
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JMFF021M05+           TGACAATATACCAACTCCTGACAATGCATTGATGCCGTTGAAACAGGTCTTGGAAAAGGA
JMFF027J13+           TGACAATATACCAACTCCTGACAATGCATTGATGCCGTTGAAACAGGTCTTGGAAAAGGA
JMFF022M22+           TGACAATATACCAACTCCTGACAATGCATTGATGCCGTTGAAACAGGTCTTGGAAAAGGA
                      ____________________________________________________________
consensus             TGACAATATACCAACTCCTGACAATGCATTGATGCCGTTGAAACAGGTCTTGGAAAAGGA
 
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JMFF021M05+           TGTCTGGCCGGAAGCGGGGCGGTGAATACCATTACCATCCTGGTTCATGTTTTGGTTTTG
JMFF027J13+           TGTCTGGCCGGAAGCGGGGCGGTGAATACCATTACCATCCTGGTTCATGTTTTGGTTTTG
JMFF022M22+           TGTCTGGCCGGAAGCGGGGCGGTGAATACCATTACCATCCTGGTTCATGTTTTGGTTTTG
                      ____________________________________________________________
consensus             TGTCTGGCCGGAAGCGGGGCGGTGAATACCATTACCATCCTGGTTCATGTTTTGGTTTTG
 
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JMFF021M05+           GTGGAGTTTTTTATGTCCATCCAAGAGATTTACTGTAATAGAATGCCCATCATCAAATTT
JMFF027J13+           GTGGAGTTTTTTATGTCCATCCAAGAGATTTACTGTAATAGAATGCCCATCATCAAATTT
JMFF022M22+           GTGGAGTTTTTTATGTCCATCCAAGAGATTTACTGTAATAGAATGCCCATCATCAAATTT
                      ____________________________________________________________
consensus             GTGGAGTTTTTTATGTCCATCCAAGAGATTTACTGTAATAGAATGCCCATCATCAAATTT
 
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JMFF021M05+           GGGCTCCATGTTCTAAACTGTTTAAGCTCCAAAAATGAAGGCGAGAGCTGAAAAAAG   
JMFF027J13+           GGGCTCCATGTTCTAAACTGTTTAAGCTCCAAAAATGAAGGCGAGAGCTGAAAAAAG   
JMFF022M22+           GGGCTCCATGTTCTAAACTGTTTAAGCTCCAAAAATGAAGGCGAGAGCTGAAGAAAGAGG
                      ____________________________________________________________
consensus             GGGCTCCATGTTCTAAACTGTTTAAGCTCCAAAAATGAAGGCGAGAGCTGAAAAAAGAGG