Contig 003164:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P06Sequence484003164 (11)gb|ACF17656.1|5e-68putative glutamine synthase 2 [Capsicum annuum]717002584 (9)ref|XP_004167630.1|1e-80PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF010I10Sequence598003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]735002584 (9)ref|XP_011071523.1|4e-112PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF022F17Sequence589003164 (11)gb|ACF17656.1|2e-88putative glutamine synthase 2 [Capsicum annuum]773002584 (9)ref|XP_011071523.1|5e-113PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF032L10Sequence617003164 (11)gb|ACF17656.1|7e-100putative glutamine synthase 2 [Capsicum annuum]104009599 (52)
JMFF035E19Sequence599003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]756002584 (9)ref|XP_011071523.1|2e-125PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF048K15Sequence482003164 (11)gb|ACF17656.1|5e-62putative glutamine synthase 2 [Capsicum annuum]522002584 (9)ref|XP_004167630.1|8e-53PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF051K07Sequence595003164 (11)gb|ACF17656.1|7e-84putative glutamine synthase 2 [Capsicum annuum]630002584 (9)ref|XP_004167630.1|5e-72PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMSF006B12Sequence203003164 (11)406001810 (12)emb|CDP21807.1|3e-38unnamed protein product, partial [Coffea canephora]
JMSF018O14Sequence497003164 (11)gb|ACF17656.1|1e-64putative glutamine synthase 2 [Capsicum annuum]741002584 (9)ref|XP_011071523.1|4e-98PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMSF028E22Sequence647003164 (11)gb|ACF17656.1|3e-86putative glutamine synthase 2 [Capsicum annuum]673002584 (9)ref|XP_011071523.1|3e-100PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMSF044I13Sequence798003164 (11)gb|ACF17656.1|7e-128putative glutamine synthase 2 [Capsicum annuum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF044I13+ CTCCAGCACCACAATAGTAAG
                      ____________________________________________________________
consensus CTCCAGCACCACAATAGTAAG
 
. : . : . : . : . : . :
JMSF044I13+ GGCCCTGAGGACCGGGGTAGCCTCCAACAGGCCAACCTAAGGGCCATTTCACATTTTGCT
                      ____________________________________________________________
consensus GGCCCTGAGGACCGGGGTAGCCTCCAACAGGCCAACCTAAGGGCCATTTCACATTTTGCT
 
. : . : . : . : . : . :
JMSF044I13+ GAAGTAAGGTGTACTCTTGTTCTATGCCATACCAAGGCACTTCTGAGACAACTTTTGGGT
                      ____________________________________________________________
consensus GAAGTAAGGTGTACTCTTGTTCTATGCCATACCAAGGCACTTCTGAGACAACTTTTGGGT
 
. : . : . : . : . : . :
JMSF028E22+ TGAGCAGCTCTGTGGCGTTTGTTTGTTGGAATGGGCTCACCAGCCGGTG
JMFF032L10+ GTTTGTTGGAATGGGCTCACCAGCCGGTG
JMFF010I10+ TG
JMFF035E19+ GTG
JMSF044I13+ CACTAAAAATCTGAGCAGCTCTGTGGCGTTTGTTTGTTGGAATGGGCTCACCAGCCGGTG
                      ____________________________________________________________
consensus CACTAAAAATCTGAGCAGCTCTGTGGCGTTTGTTTGTTGGAATGGGCTCACCAGCCGGTG
 
. : . : . : . : . : . :
JMSF028E22+ TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF032L10+ TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF010I10+ TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF035E19+ TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF051K07+ GTATGTATCACAGATGACCAAGATGTTG-TACCGCCACGAAAAGGATCCTTAAAAATAG
JMSF044I13+ TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF022F17+ CAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
                      ____________________________________________________________
consensus TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
 
. : . : . : . : . : . :
JMSF028E22+ CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF032L10+ CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF010I10+ CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMSF018O14+ TGTCCAGTACTCGATCCAT
JMFF005P06+ TCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF035E19+ CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF051K07+ CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF048K15+ ATCCAT
JMSF044I13+ CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF022F17+ CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
                      ____________________________________________________________
consensus CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
 
. : . : . : . : . : . :
JMSF028E22+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF032L10+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF010I10+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMSF018O14+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF005P06+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF035E19+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF051K07+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF048K15+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMSF044I13+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF022F17+ CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
                      ____________________________________________________________
consensus CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
 
. : . : . : . : . : . :
JMSF028E22+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF032L10+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTTG
JMFF010I10+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMSF018O14+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF005P06+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF035E19+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF051K07+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF048K15+ TACTACGGGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMSF044I13+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF022F17+ TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
                      ____________________________________________________________
consensus TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
 
. : . : . : . : . : . :
JMSF028E22+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF032L10+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF010I10+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMSF018O14+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF005P06+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF035E19+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF051K07+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF048K15+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMSF044I13+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF022F17+ TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
                      ____________________________________________________________
consensus TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
 
. : . : . : . : . : . :
JMSF028E22+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF032L10+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF010I10+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMSF018O14+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF005P06+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF035E19+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF051K07+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF048K15+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMSF044I13+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF022F17+ ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
                      ____________________________________________________________
consensus ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
 
. : . : . : . : . : . :
JMSF028E22+ TCATTACAACAGAACCCCA-ATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF032L10+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF010I10+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMSF018O14+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF005P06+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF035E19+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF051K07+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF048K15+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMSF044I13+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMSF006B12+ GGAGTAGCNTCTGTCAAGTTCTTTG
JMFF022F17+ TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
                      ____________________________________________________________
consensus TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
 
. : . : . : . : . : . :
JMSF028E22+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF032L10+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF010I10+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMSF018O14+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF005P06+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF035E19+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF051K07+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF048K15+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMSF044I13+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMSF006B12+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF022F17+ TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
                      ____________________________________________________________
consensus TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
 
. : . : . : . : . : . :
JMSF028E22+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF032L10+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF010I10+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMSF018O14+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF005P06+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF035E19+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF051K07+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF048K15+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGG-TTTGAAAAAGTGGGAGT
JMSF044I13+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMSF006B12+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF022F17+ GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
                      ____________________________________________________________
consensus GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
 
. : . : . : . : . : . :
JMSF028E22+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTC
JMFF032L10+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCT
JMFF010I10+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCA
JMSF018O14+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACC
JMFF005P06+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGG
JMFF035E19+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCA
JMFF051K07+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC
JMFF048K15+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC
JMSF044I13+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC
JMSF006B12+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC
JMFF022F17+ GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAAACTCACAGT
                      ____________________________________________________________
consensus GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCACAGT