Contig 003164:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P06Sequence484003164 (11)gb|ACF17656.1|5e-68putative glutamine synthase 2 [Capsicum annuum]717002584 (9)ref|XP_004167630.1|1e-80PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF010I10Sequence598003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]735002584 (9)ref|XP_011071523.1|4e-112PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF022F17Sequence589003164 (11)gb|ACF17656.1|2e-88putative glutamine synthase 2 [Capsicum annuum]773002584 (9)ref|XP_011071523.1|5e-113PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF032L10Sequence617003164 (11)gb|ACF17656.1|7e-100putative glutamine synthase 2 [Capsicum annuum]104009599 (52)
JMFF035E19Sequence599003164 (11)gb|ACF17656.1|1e-92putative glutamine synthase 2 [Capsicum annuum]756002584 (9)ref|XP_011071523.1|2e-125PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMFF048K15Sequence482003164 (11)gb|ACF17656.1|5e-62putative glutamine synthase 2 [Capsicum annuum]522002584 (9)ref|XP_004167630.1|8e-53PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMFF051K07Sequence595003164 (11)gb|ACF17656.1|7e-84putative glutamine synthase 2 [Capsicum annuum]630002584 (9)ref|XP_004167630.1|5e-72PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like, partial [Cucu
JMSF006B12Sequence203003164 (11)406001810 (12)emb|CDP21807.1|3e-38unnamed protein product, partial [Coffea canephora]
JMSF018O14Sequence497003164 (11)gb|ACF17656.1|1e-64putative glutamine synthase 2 [Capsicum annuum]741002584 (9)ref|XP_011071523.1|4e-98PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMSF028E22Sequence647003164 (11)gb|ACF17656.1|3e-86putative glutamine synthase 2 [Capsicum annuum]673002584 (9)ref|XP_011071523.1|3e-100PREDICTED: glutamine synthetase leaf isozyme, chloroplastic-like [Sesamum indic
JMSF044I13Sequence798003164 (11)gb|ACF17656.1|7e-128putative glutamine synthase 2 [Capsicum annuum]

Alignment

This contig is upended


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JMSF044I13+                                                  CTCCAGCACCACAATAGTAAG
                      ____________________________________________________________
consensus                                                    CTCCAGCACCACAATAGTAAG
 
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JMSF044I13+           GGCCCTGAGGACCGGGGTAGCCTCCAACAGGCCAACCTAAGGGCCATTTCACATTTTGCT
                      ____________________________________________________________
consensus             GGCCCTGAGGACCGGGGTAGCCTCCAACAGGCCAACCTAAGGGCCATTTCACATTTTGCT
 
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JMSF044I13+           GAAGTAAGGTGTACTCTTGTTCTATGCCATACCAAGGCACTTCTGAGACAACTTTTGGGT
                      ____________________________________________________________
consensus             GAAGTAAGGTGTACTCTTGTTCTATGCCATACCAAGGCACTTCTGAGACAACTTTTGGGT
 
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JMSF028E22+                      TGAGCAGCTCTGTGGCGTTTGTTTGTTGGAATGGGCTCACCAGCCGGTG
JMFF032L10+                                          GTTTGTTGGAATGGGCTCACCAGCCGGTG
JMFF010I10+                                                                     TG
JMFF035E19+                                                                    GTG
JMSF044I13+           CACTAAAAATCTGAGCAGCTCTGTGGCGTTTGTTTGTTGGAATGGGCTCACCAGCCGGTG
                      ____________________________________________________________
consensus             CACTAAAAATCTGAGCAGCTCTGTGGCGTTTGTTTGTTGGAATGGGCTCACCAGCCGGTG
 
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JMSF028E22+           TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF032L10+           TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF010I10+           TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF035E19+           TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF051K07+            GTATGTATCACAGATGACCAAGATGTTG-TACCGCCACGAAAAGGATCCTTAAAAATAG
JMSF044I13+           TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
JMFF022F17+                      CAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
                      ____________________________________________________________
consensus             TGTATGTATCACAGATGACCAAGATGTTGTTACCGCCACGAAAAGGATCCTTAAAAATAG
 
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JMSF028E22+           CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF032L10+           CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF010I10+           CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMSF018O14+                                                    TGTCCAGTACTCGATCCAT
JMFF005P06+                                          TCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF035E19+           CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF051K07+           CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF048K15+                                                                 ATCCAT
JMSF044I13+           CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
JMFF022F17+           CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
                      ____________________________________________________________
consensus             CCTGAGGGTATAGAATAACTTCACTATCTTCTCCAGGTGCTTGTCCAGTACTCGATCCAT
 
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JMSF028E22+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF032L10+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF010I10+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMSF018O14+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF005P06+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF035E19+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF051K07+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF048K15+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMSF044I13+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
JMFF022F17+           CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
                      ____________________________________________________________
consensus             CATAGTTCCACTTTGGAAGCTCAGAAGGATGTTGAACTGGCTTTGAAATTGTCCTTGACT
 
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JMSF028E22+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF032L10+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTTG
JMFF010I10+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMSF018O14+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF005P06+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF035E19+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF051K07+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF048K15+           TACTACGGGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMSF044I13+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
JMFF022F17+           TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
                      ____________________________________________________________
consensus             TACTACGCGTGTCAATTCCAGATCCACCAATCCAAATGTATTCAGCAATGATCTTATTGG
 
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JMSF028E22+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF032L10+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF010I10+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMSF018O14+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF005P06+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF035E19+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF051K07+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF048K15+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMSF044I13+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
JMFF022F17+           TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
                      ____________________________________________________________
consensus             TATATGGGGTGACATCTAAATTTAGTAGCTGTTCAATCCGGTTCACCGTGCTGTTCCCAG
 
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JMSF028E22+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF032L10+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF010I10+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMSF018O14+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF005P06+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF035E19+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF051K07+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF048K15+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMSF044I13+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
JMFF022F17+           ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
                      ____________________________________________________________
consensus             ACTGGAGAGCAAACACTCTAAACTTAGCAGTGCTTTTTACTGCCACCCTTTTGTTGGGTT
 
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JMSF028E22+           TCATTACAACAGAACCCCA-ATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF032L10+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF010I10+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMSF018O14+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF005P06+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF035E19+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF051K07+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMFF048K15+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMSF044I13+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
JMSF006B12+                                              GGAGTAGCNTCTGTCAAGTTCTTTG
JMFF022F17+           TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
                      ____________________________________________________________
consensus             TCATTACAACAGAACCCCACATCTTTGAAGCCATTGGAGTAGCCTCTGTCAAGTTCTTTG
 
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JMSF028E22+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF032L10+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF010I10+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMSF018O14+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF005P06+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF035E19+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF051K07+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF048K15+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMSF044I13+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMSF006B12+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
JMFF022F17+           TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
                      ____________________________________________________________
consensus             TCATCCTCATCTGCCATTGGGCAGAAGGAGCTAAAATCTGCGCCATTTTCACCTGTTATC
 
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JMSF028E22+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF032L10+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF010I10+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMSF018O14+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF005P06+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF035E19+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF051K07+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF048K15+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGG-TTTGAAAAAGTGGGAGT
JMSF044I13+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMSF006B12+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
JMFF022F17+           GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
                      ____________________________________________________________
consensus             GATCGGTGGAAATGGGGTAGCAGTGGCAGGGAACAGAAGAGGTTTTGAAAAAGTGGGAGT
 
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JMSF028E22+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTC     
JMFF032L10+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCT            
JMFF010I10+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCA    
JMSF018O14+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACC       
JMFF005P06+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGG                          
JMFF035E19+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCA    
JMFF051K07+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC   
JMFF048K15+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC   
JMSF044I13+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC   
JMSF006B12+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCAC   
JMFF022F17+           GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAAACTCACAGT
                      ____________________________________________________________
consensus             GGATTGGTGGAGAAGGGGAGCTGGGGTATCAAGGTAGTATGAGAGGCTAAACCTCACAGT