Contig 003145:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018I15Sequence534003145 (2)ref|XP_011084194.1|2e-35PREDICTED: transcription factor bHLH78-like [Sesamum indicum]652014081 (3)emb|CDP10270.1|8e-22unnamed protein product [Coffea canephora]
JMFF025N10Sequence502003145 (2)ref|XP_011084194.1|1e-27PREDICTED: transcription factor bHLH78-like [Sesamum indicum]629014081 (3)emb|CDP10270.1|9e-21unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF025N10+                                                 GCGAATCCAGGATCCGCGGAGA
JMFF018I15+                 CGGAAAAACAAGAAAATCTTGCGGCCCTCTCTGCGAATCCAGGATCCGCGGAGA
                      ____________________________________________________________
consensus                   CGGAAAAACAAGAAAATCTTGCGGCCCTCTCTGCGAATCCAGGATCCGCGGAGA
 
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JMFF025N10+           AACTCGAGAGGCCAGGATGGATGGGGAAATTGGCGCCCCTGATCTGATGATCCGCCATTG
JMFF018I15+           AACTCGAGAGGCCAGGATGGATGGGGAAATTGGCGCCCCTGATCTGATGATCCGCCATTG
                      ____________________________________________________________
consensus             AACTCGAGAGGCCAGGATGGATGGGGAAATTGGCGCCCCTGATCTGATGATCCGCCATTG
 
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JMFF025N10+           ATGAAAGGTTTAGCTTAGGAGGGGAATTCAAGGGGGTGTTATAACAAGAACTGTTAGTAC
JMFF018I15+           ATGAAAGGTTTAGCTTAGGAGGGGAATTCAAGGGGGTGTTATAACAAGAACTGTTAGTAC
                      ____________________________________________________________
consensus             ATGAAAGGTTTAGCTTAGGAGGGGAATTCAAGGGGGTGTTATAACAAGAACTGTTAGTAC
 
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JMFF025N10+           AGGCGGCCGGAGAAATGTCGCCGGGGCTATCAAAGCTGCCTAGTCTGCCAATCAGTTCCC
JMFF018I15+           AGGCGGCCGGAGAAATGTCGCCGGGGCTATCAAAGCTGCCTAGTCTGCCAATCAGTTCCC
                      ____________________________________________________________
consensus             AGGCGGCCGGAGAAATGTCGCCGGGGCTATCAAAGCTGCCTAGTCTGCCAATCAGTTCCC
 
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JMFF025N10+           TGAGCACAAAATTCTCGTTCCCCCCGGAAGCGTTGGCAGCCGCCGGCGCTACTCCGGCGT
JMFF018I15+           TGAGCACAAAATTCTCGTTCCCCCCGGAAGCGTTGGCAGCCGCCGGCGCTACTCCGGCGT
                      ____________________________________________________________
consensus             TGAGCACAAAATTCTCGTTCCCCCCGGAAGCGTTGGCAGCCGCCGGCGCTACTCCGGCGT
 
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JMFF025N10+           TGGACGCCGCCGGAGACGACACCATGGAGCTCAACGCCGACTCGAACGGGTCACTCTGAT
JMFF018I15+           TGGACGCCGCCGGAGACGACACCATGGAGCTCAACGCCGACTCGAACGGGTCACTCTGAT
                      ____________________________________________________________
consensus             TGGACGCCGCCGGAGACGACACCATGGAGCTCAACGCCGACTCGAACGGGTCACTCTGAT
 
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JMFF025N10+           CCACCGGATTCTCCCAACTGGGATTGAAGAAATCATTGGCCTCAACTCCAACTCCATATG
JMFF018I15+           CCACCGGATTCTCCCAACTGGGATTGAAGAAATCATTGGCCTCAACTCCAACTCCATATG
                      ____________________________________________________________
consensus             CCACCGGATTCTCCCAACTGGGATTGAAGAAATCATTGGCCTCAACTCCAACTCCATATG
 
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JMFF025N10+           GCATTGTGATCCCATCACTCAAAAACAAATTTTGTTTATCCATGTTAGGGAATTGAACAC
JMFF018I15+           GCATTGTGATCCCATCACTCAAAAACAAATTTTGTTTATCCATGTTAGGGAATTGAACAC
                      ____________________________________________________________
consensus             GCATTGTGATCCCATCACTCAAAAACAAATTTTGTTTATCCATGTTAGGGAATTGAACAC
 
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JMFF025N10+           TTGAAGAATCACCTCAAGAAAACTTCAAATTCTGGCAAAATGAACTAGAGTTCACACTAT
JMFF018I15+           TTGAAGAATCACCTCAAGAAAACTTCAAATTCTGGCAAAATGAACTAGAGTTCACACTAT
                      ____________________________________________________________
consensus             TTGAAGAATCACCTCAAGAAAACTTCAAATTCTGGCAAAATGAACTAGAGTTCACACTAT