Contig 003142:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018A09Sequence377003142 (4)ref|XP_004230322.1|1e-24PREDICTED: importin subunit alpha-1 [Solanum lycopersicum]715012493 (5)gb|AAK38726.1|AF369706_12e-92importin alpha 1 [Capsicum annuum]
JMFF018E13Sequence113003142 (4)720012493 (5)gb|AAK38726.1|AF369706_15e-83importin alpha 1 [Capsicum annuum]
JMFF032H16Sequence113003142 (4)725012493 (5)gb|AAK38726.1|AF369706_12e-84importin alpha 1 [Capsicum annuum]
JMFS065G04Sequence458003142 (4)ref|XP_002512528.1|3e-23importin alpha, putative [Ricinus communis] gb|EEF49980.1| importin alpha, putat

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF018A09+ CCATNCCCCTTGGNCCAT
                      ____________________________________________________________
consensus CCATNCCCCTTGGNCCAT
 
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JMFF018A09+ CAATGGTATNCTTTCCAGCCGTTTTTTTATAGCGGCGGCGGATTGAGTAGCGTCGGGGGG
                      ____________________________________________________________
consensus CAATGGTATNCTTTCCAGCCGTTTTTTTATAGCGGCGGCGGATTGAGTAGCGTCGGGGGG
 
. : . : . : . : . : . :
JMFS065G04- CCTCGCGGCGCTTCTTAAGCAGGTTGTC
JMFF018A09+ GAGTTGTTGTTGTTGGGACTGAAGGAGAAGGCCCTCGCGGNGCTTTTTAAGCAGGTTGTC
                      ____________________________________________________________
consensus GAGTTGTTGTTGTTGGGACTGAAGGAGAAGGCCCTCGCGGCGCTTTTTAAGCAGGTTGTC
 
. : . : . : . : . : . :
JMFS065G04- CTCGCGCTTGCTCTTCCTGATCTCCACCATGTTGTCTTCCCTCCGCCGCCGCGCCTTGTC
JMFF018A09+ CTCGCGCTTGCTTTTCCTGATNTCCNCCANGTTGTTTTCCCTCCGCCGCCGCGCCTTGTC
                      ____________________________________________________________
consensus CTCGCGCTTGCTTTTCCTGATCTCCACCATGTTGTTTTCCCTCCGCCGCCGCGCCTTGTC
 
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JMFS065G04- CGCATCCACCCCAGTTTTGTACGACTTTTTCCGGGCATCCGCCCGGGTGCTTGGCCGCAA
JMFF018A09+ CGCATCCNCCCCAGTTTTGTNCGACTTTTTCCGGGCATCCNCCCGGGTGCTTGGCCGCAA
                      ____________________________________________________________
consensus CGCATCCACCCCAGTTTTGTACGACTTTTTCCGGGCATCCGCCCGGGTGCTTGGCCGCAA
 
. : . : . : . : . : . :
JMFS065G04- AGACATTTTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
JMFF018E13+ TTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
JMFF032H16+ TTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
JMFF018A09+ AGACA-TTTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
                      ____________________________________________________________
consensus AGACATTTTTTTTTTTTGTTTTCACACCCGCCGTGCAAGTGTTCGACGAAATGTCGAAGA
 
. : . : . : . : . : . :
JMFS065G04- TAGATAGAGTGAGTGA
JMFF018E13+ TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT
JMFF032H16+ TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT
JMFF018A09+ TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT
                      ____________________________________________________________
consensus TAGATAGAGTGAGTGAGAGGGCAGAGTTTGTGTTACGAGATTTGGTTGACTGAAAAACGT