Contig 003127:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF015I11Sequence526003127 (6)ref|XP_010062840.1|5e-89PREDICTED: ras-related protein RABA1f-like [Eucalyptus grandis] gb|KCW69976.1| h741003127 (6)ref|XP_011082725.1|2e-99PREDICTED: ras-related protein Rab11B [Sesamum indicum]
JMFN035H14Sequence445003127 (6)ref|XP_011082725.1|4e-37PREDICTED: ras-related protein Rab11B [Sesamum indicum]
JMFN046J01Sequence583003127 (6)ref|XP_010060643.1|1e-89PREDICTED: ras-related protein RABA1f [Eucalyptus grandis] gb|KCW67427.1| hypoth
JMSF017B16Sequence322003127 (6)ref|XP_010060643.1|2e-37PREDICTED: ras-related protein RABA1f [Eucalyptus grandis] gb|KCW67427.1| hypoth761003127 (6)ref|XP_011082725.1|6e-123PREDICTED: ras-related protein Rab11B [Sesamum indicum]

Alignment

This contig is upended


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rJMFF015I11-                                                TGTATAAAGCTAGTCAGAGGCT
                      ____________________________________________________________
consensus                                                   TGTATAAAGCTAGTCAGAGGCT
 
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JMFN035H14+                                      ATACAAATGAAACAATACACAAATGGAGTAAAA
rJMFF015I11-          CGAAAAAGAGGCGGTGAATGAGCAGATATACAAATGAAACAATACACAAATGGAGTAAAA
                      ____________________________________________________________
consensus             CGAAAAAGAGGCGGTGAATGAGCAGATATACAAATGAAACAATACACAAATGGAGTAAAA
 
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JMFN035H14+           TGCTTAAGCAGACATCATCCACT-GCAAAAGGGATTGAGACTATGCTGCAATTCTCTATG
rJMFF015I11-          TGCTTAAGCAGACATCATCCACT-GCAAAAGGGATTGAGACTATGCTGCAATTCTCTATG
rJMSF017B16-           GCTTAAGCAGACATCATCCACTGGCAAAAGGGATTGAGACTATGCTGCAATTCTCTATG
                      ____________________________________________________________
consensus             TGCTTAAGCAGACATCATCCACT-GCAAAAGGGATTGAGACTATGCTGCAATTCTCTATG
 
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JMFN035H14+           AAGTGCAAAACTACATTTCACAAGCAGTTCAAAAAAACATAATCATAATAATAAGGCAAC
rJMFF015I11-          AAGTGCAAAACTACATTTCACAAGCAGTTCAAAAAAACATAATCATAATAATAAGGCAAC
rJMSF017B16-          AAGTGCAAAACTACATTTCACAAGCAGTTCAAAAAAACATAATCATAATAATAAGGCAAC
                      ____________________________________________________________
consensus             AAGTGCAAAACTACATTTCACAAGCAGTTCAAAAAAACATAATCATAATAATAAGGCAAC
 
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JMFN035H14+           TACATCAGATGTATTAACTGGAAGTAGCTGAGTGTTTGGAGTTTGAGCTAGAGGGCAATA
rJMFF015I11-          TACATCAGATGTATTAACTGGAAGTAGCTGAGTGTTTGGAGTTTGAGCTAGAGGGCAATA
rJMSF017B16-          TACATCAGATGTATTAACTGGAAGTAGCTGAGTGTTTGGAGTTTGAGCTAGAGGGCAATA
                      ____________________________________________________________
consensus             TACATCAGATGTATTAACTGGAAGTAGCTGAGTGTTTGGAGTTTGAGCTAGAGGGCAATA
 
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JMFN035H14+           ATGCAGACCTGTAAATTCAGACAGAGCAGCAATTAACTTTCTTTACAGCTGAAACATCAT
rJMFF015I11-          ATGCAGACCTGTAAATTCAGACAGAGCAGCAATTAACTTTCTTTACAGCTGAAACATCAT
rJMSF017B16-          ATGCAGACCTGTAAATTCAGACAGAGCAGCAATTAACTTTCTTTACAGCTGAAACATCAT
                      ____________________________________________________________
consensus             ATGCAGACCTGTAAATTCAGACAGAGCAGCAATTAACTTTCTTTACAGCTGAAACATCAT
 
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JMFN035H14+           CCTTCCCTCCCACGCTTATGGTTTGCCCCTTTGGCAAGGCTGCCGGGTCATCCCCAACCT
rJMFF015I11-          CCTTCCCTCCCACGCTTATGGTTTGCCCCTTTGGCAAGGCTGCCGGGTCATCCCCAACCT
rJMSF017B16-          CCTTCCCTCCCACGCTTATGGTTTGCCCCTTTGGCAAGGCTGCCGGGTCATCCCCAACCT
                      ____________________________________________________________
consensus             CCTTCCCTCCCACGCTTATGGTTTGCCCCTTTGGCAAGGCTGCCGGGTCATCCCCAACCT
 
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JMFN035H14+           CAAGTGCTTTCCGACTGATCACATGGTATATCTGGGTTAGCACCTCTGTGAAGGCGTTCT
rJMFF015I11-          CAAGTGCTTTCCGACTGATCACATGGTATATCTGGGTTAGCACCTCTGTGAAGGCGTTCT
rJMSF017B16-          CAAGTGCTTTCCGACTGATCACATGGTATATCTGGGTTAGCACCTCTGTGAAGGCGTTCT
JMFN046J01+           CAAGTGCTTTCCGACTGATCACATGGTATATCTGGGTTAGCACCTCTGTGAAGGCGTTCT
                      ____________________________________________________________
consensus             CAAGTGCTTTCCGACTGATCACATGGTATATCTGGGTTAGCACCTCTGTGAAGGCGTTCT
 
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JMFN035H14+           CAACGTTCAGGGACTCGAGAGCCGATGTTTCCATGAAAAAGGTGCTCTCCCTT       
rJMFF015I11-          CAACGTTCAGGGACTCGAGAGCCGATGTTTCCATGAAAAAGGTGCTCTCCCTTTCAGCAA
rJMSF017B16-          CAACGTTCAGGGACTCGAGAGCCGATGTTTCCATGAAAAAGGTGCTCTCCCTTTCAGCAA
JMFN046J01+           CAACGTTCAGGGACTCGAGAGCCGATGTTTCCATGAAAAAGGTGCTCTCCCTTTCAGCAA
                      ____________________________________________________________
consensus             CAACGTTCAGGGACTCGAGAGCCGATGTTTCCATGAAAAAGGTGCTCTCCCTTTCAGCAA
 
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rJMFF015I11-          AGGCCGTCGCATCCTCAGTTGAAACAGCGCGCAAGTGGCGCAAATCCGCCTTATTTCCCA
rJMSF017B16-          AGGCCGTCGCATCCTCAGTTGAAACAGCGCGCAAGTGGCGCAAATCCGCCTTATTTCCCA
JMFN046J01+           AGGCCGTCGCATCCTCAGTTGAAACAGCGCGCAAGTGGCGCAAATCCGCCTTATTTCCCA
JMFF015I11+                         TCAGTTGAAACAGCGCGCAAGTGGCGCAAATCCGCCTTATTTCCCA
                      ____________________________________________________________
consensus             AGGCCGTCGCATCCTCAGTTGAAACAGCGCGCAAGTGGCGCAAATCCGCCTTATTTCCCA
 
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rJMFF015I11-          CCAGCATTATCACAATGTTCTGGTCTGTGTGATCTCTAAGCTCTTTTAACCATCTAGCAA
rJMSF017B16-          CCAGCATTATCACAATGTTCTGGTCTGTGTGATCTCTAAGCTCTTTTAACCATCTAGCAA
JMFN046J01+           CCAGCATTATCACAATGTTCTGGTCTGTGTGATCTCTAAGCTCTTTTAACCATCTAGCAA
JMFF015I11+           CCAGCATTATCACAATGTTCTGGTCTGTGTGATCTCTAAGCTCTTTTAACCATCTAGCAA
                      ____________________________________________________________
consensus             CCAGCATTATCACAATGTTCTGGTCTGTGTGATCTCTAAGCTCTTTTAACCATCTAGCAA
 
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rJMFF015I11-          CGTTTTCAAATGTGACATGACGGGTAACATCATATACAAGCAATGCACCAACAGCCCCTC
rJMSF017B16-          CGTTTTCAAATGTGACATGACGGGTAACATCATATACAAGCAATGCACCAACAGCCCCTC
JMFN046J01+           CGTTTTCAAATGTGACATGACGGGTAACATCATATACAAGCAATGCACCAACAGCCCCTC
JMFF015I11+           CGTTTTCAAATGTGACATGACGGGTAACATCATATACAAGCAATGCACCAACAGCCCCTC
                      ____________________________________________________________
consensus             CGTTTTCAAATGTGACATGACGGGTAACATCATATACAAGCAATGCACCAACAGCCCCTC
 
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rJMFF015I11-          GGTAGTATGCACTTGTAATGGCACGGTACCTTTCCTGGCCGGCGGTGTCCCAAATCTGAG
rJMSF017B16-          GGTAGTATGCACTTGTAATGGCACGGTACCTTTCCTGGCCGGCGGTGTCCCAAATCTGAG
JMFN046J01+           GGTAGTATGCACTTGTAATGGCACGGTACCTTTCCTGGCCGGCGGTGTCCC-AATCTGAG
JMSF017B16+                                                   GGCGGTGTCCCAAATCTGAG
JMFF015I11+           GGTAGTATGCACTTGTAATGGCACGGTACCTTTCCTGGCCGGCGGTGTCCCAAATCTGAG
                      ____________________________________________________________
consensus             GGTAGTATGCACTTGTAATGGCACGGTACCTTTCCTGGCCGGCGGTGTCCCAAATCTGAG
 
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rJMSF017B16-          CCTTGACGACCTTGTCGTCGACCCGGATGCTGCGGGTGGCGAACTCGACGCCNATGGTGG
JMFN046J01+           CCTTGACGACCTTGTCGTCGACCCGGATGCTGCGGGTGGCGAACTCGACGCCAATGGTGG
JMSF017B16+           CCTTGACGACCTTGTCGTCGACCCGGATGCTGCGGGTGGCGAACTCGACGCCAATGGTGG
JMFF015I11+           CCTTGACGACCTTGTCGTCGACCCGGATGCTGCGGGTGGCGAACTCGACGCCAATGGTGG
                      ____________________________________________________________
consensus             CCTTGACGACCTTGTCGTCGACCCGGATGCTGCGGGTGGCGAACTCGACGCCAATGGTGG
 
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rJMSF017B16-          ACTTTGACTCGAGGTTAAACTCGTTCCGAGTGAATCTCGAGA                  
JMFN046J01+           ACTTTGACTCGAGGTTAAACTCGTTCCGAGTGAATCTCGAGAGCAGATTGGACTTGCCGA
JMSF017B16+           ACTTTGACTCGAGGTTAAACTCGTTCCGAGTGAATCTCGAGAGCAGATTGGACTTGCCGA
JMFF015I11+           ACTTTGACTCGAGGTTAAACTCGTTCCGAGTGAATCTCGAGAGCAGATTGGACTTGCCGA
                      ____________________________________________________________
consensus             ACTTTGACTCGAGGTTAAACTCGTTCCGAGTGAATCTCGAGAGCAGATTGGACTTGCCGA
 
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JMFN046J01+           CACCGGAGTCGCCTATGAGCACCACCTTG                               
JMSF017B16+           CACCGGAGTCGCCTATGAGCACCACCTTG                               
JMFF015I11+           CACCGGAGTCGCCTATGAGCACCACCTTGCAGAGGTAATCATAGTCATCATCAGCTCTAC
                      ____________________________________________________________
consensus             CACCGGAGTCGCCTATGAGCACCACCTTGCAGAGGTAATCATAGTCATCATCAGCTCTAC
 
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JMFF015I11+           TGTAGCCGCCAGCCATCTCTATACGCAGATACAAATACAGTAAAGTATTATGTATATATA
                      ____________________________________________________________
consensus             TGTAGCCGCCAGCCATCTCTATACGCAGATACAAATACAGTAAAGTATTATGTATATATA
 
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JMFF015I11+           TGAATGATCAAAAATTTGCAGAGAGTAAAAAGATCCGTTCCTTAGAACAGTGGAGCAGAC
                      ____________________________________________________________
consensus             TGAATGATCAAAAATTTGCAGAGAGTAAAAAGATCCGTTCCTTAGAACAGTGGAGCAGAC