| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015G20 | Sequence | 613 | 003125 (4) | gb|KDP45387.1| | 1e-91 | hypothetical protein JCGZ_09636 [Jatropha curcas] | 630 | 019092 | ref|XP_006340324.1| | 1e-04 | PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Solanum tuberosum] |
| JMSF034M19 | Sequence | 615 | 003125 (4) | ref|XP_011098510.1| | 4e-98 | PREDICTED: ubiquitin-conjugating enzyme E2 5-like [Sesamum indicum] | 616 | 003125 (4) | ref|XP_006340324.1| | 2e-61 | PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Solanum tuberosum] |
| JMSF048E02 | Sequence | 578 | 003125 (4) | ref|XP_006340324.1| | 4e-64 | PREDICTED: ubiquitin-conjugating enzyme E2-23 kDa-like [Solanum tuberosum] | |||||
This contig is upended
. : . : . : . : . : . :
rJMSF034M19- AAAAGTCAGATACTTACATTACCCTTTGCATATCCAGTTGGC
____________________________________________________________
consensus AAAAGTCAGATACTTACATTACCCTTTGCATATCCAGTTGGC
. : . : . : . : . : . :
rJMSF034M19- AGAGTTACAGACAATTTAAACACTGTTACCATTTTCATTCTAAAACAGTTCATCTTTTGA
____________________________________________________________
consensus AGAGTTACAGACAATTTAAACACTGTTACCATTTTCATTCTAAAACAGTTCATCTTTTGA
. : . : . : . : . : . :
rJMSF034M19- TCATCTTAAGTAACAAGAACTGATTCACTAAGAAAGACTATGCCCCTGTGATCATGTCCT
rJMSF048E02- GAAAGACTATGCCCCTGTGANCATGTCCT
____________________________________________________________
consensus TCATCTTAAGTAACAAGAACTGATTCACTAAGAAAGACTATGCCCCTGTGATCATGTCCT
. : . : . : . : . : . :
rJMSF034M19- AGATTTACATAAGAATGTAGTAATACAATAAAGGGGTTGAATGAACCTGCGGCATGGAAA
rJMSF048E02- AGATNTACATNAGAATGTAGTAATACANTAAAGGGGTTGAATGAACCTGCGGCATGGAAA
____________________________________________________________
consensus AGATTTACATAAGAATGTAGTAATACAATAAAGGGGTTGAATGAACCTGCGGCATGGAAA
. : . : . : . : . : . :
rJMSF034M19- TAACATCTTATTCAAATCCACGCCATTCCATTACGGGTCTGCATGTCCAGCAACTTCATC
rJMSF048E02- TAACAGCTTATTCAAATCCNCGCCANTCCATTACGGGTCTGCGNGTCCAGCAACNTCATC
____________________________________________________________
consensus TAACATCTTATTCAAATCCACGCCATTCCATTACGGGTCTGCGTGTCCAGCAACTTCATC
. : . : . : . : . : . :
rJMSF034M19- TTCGCTATCACTTTGCCCACTAAGATACTCATCACTAAGCTCCTCATCGCTCTCTTCTTT
rJMSF048E02- TTCGCTATCANNTTGCCCACTAAGATACNCANCACTAAGCTCCTCATCGCTCTCTTCTTT
____________________________________________________________
consensus TTCGCTATCACTTTGCCCACTAAGATACTCATCACTAAGCTCCTCATCGCTCTCTTCTTT
. : . : . : . : . : . :
rJMSF034M19- CTGTGTGCTGATGTTTTCCTTCTTTGCATACCGCTCACAATACTCTTTCACTTTTTGGTC
rJMSF048E02- CTGTGTGCTGATGTTTTCCTTCTTTGCATACCGCTCACAATACTCTTTCACTTTTTGGNC
JMSF034M19+ TTGCATACCGCTCACAATACTCTTTCACTTTTTGGTC
JMFF015G20+ CACTTTTTGGTC
____________________________________________________________
consensus CTGTGTGCTGATGTTTTCCTTCTTTGCATACCGCTCACAATACTCTTTCACTTTTTGGTC
. : . : . : . : . : . :
rJMSF034M19- ATATTGCTTCTTGTCCTTCATCATCAGTGATGCTGCATCGCCATTCAAGGGGTCTGATGG
rJMSF048E02- ANATNGCTNCTTGTCNTTCATCATCANGGATGCTGCNTCGCCNTTCANGGGGTCTGATGG
JMSF034M19+ ATATTGCTTCTTGTCCTTCATCATCAGTGATGCTGCATCGCCATTCAAGGGGTCTGATGG
JMFF015G20+ ATATTGCTTCTTGTCCTTCATCATCAGTGATGCTGCATCGCCATTCAAGGGGTCTGATGG
____________________________________________________________
consensus ATATTGCTTCTTGTCCTTCATCATCAGTGATGCTGCATCGCCATTCAAGGGGTCTGATGG
. : . : . : . : . : . :
rJMSF034M19- ATTCGGGTAAAGCAGGAGTTGAGGGAGGAAAACCTCAAAGACATTTAAAAGATCAAACAT
rJMSF048E02- ANTCNGGTAANGCAGGAGTTGAGGGANGAAAACCTCAAAGACNTTTAAAAGATCAANCAT
JMSF034M19+ ATTCGGGTAAAGCAGGAGTTGAGGGAGGAAAACCTCAAAGACATTTAAAAGATCAAACAT
JMFF015G20+ ATTCGGGTAAAGCAGGAGTTGAGGGAGGAAAACCTCAAAGACATTTAAAAGATCAAACAT
____________________________________________________________
consensus ATTCGGGTAAAGCAGGAGTTGAGGGAGGAAAACCTCAAAGACATTTAAAAGATCAAACAT
. : . : . : . : . : . :
rJMSF034M19- TGGACTCCATGACTGGTTGATGACATCCAAACATACAGAACCGGACAGTTCATCAACATT
rJMSF048E02- TTGACTCCATGACTGGTTGATGACATCCAAACATACANAACCGGACAGTTCATCAACATT
JMSF034M19+ TGGACTCCATGACTGGTTGATGACATCCAAACATACAGAACCGGACAGTTCATCAACATT
JMFF015G20+ TGGACTCCATGACTGGTTGATGACATCCAAACATACAGAACCGGACAGTTCATCAACATT
____________________________________________________________
consensus TGGACTCCATGACTGGTTGATGACATCCAAACATACAGAACCGGACAGTTCATCAACATT
. : . : . : . : . : . :
rJMSF034M19- TGGGTGGAATATTTTGTTTAGAAACCCAATGGAA
rJMSF048E02- TGGGTGGAATATTTTGTTTAGAAACCCGATGGAAGGAGACTTGTAAGGATAAGCATCTGG
JMSF034M19+ TGGGTGGAATATTTTGTTTAGAAACCCAATGGAAGGAGACTTGTAAGGATAAGCATCTGG
JMFF015G20+ TGGGTGGAATATTTTGTTTAGAAACCCAATGGAAGGAGACTTGTAAGGATAAGCATCTGG
____________________________________________________________
consensus TGGGTGGAATATTTTGTTTAGAAACCCAATGGAAGGAGACTTGTAAGGATAAGCATCTGG
. : . : . : . : . : . :
rJMSF048E02- AAGCTCCACACGAACTTTCCAGACTCCGCCTTCATAANNGCTTTCTTTTGGA
JMSF034M19+ AAGCTCCACACGAACTTTCCAGACTCCACCTTCATAAAGGCTTTCTTTTGGACCATGGAA
JMFF015G20+ AAGCTCCACACGAACTTTCCAGACTCCACCTTCATAAAGGCTTTCTTTTGGACCATGGAA
____________________________________________________________
consensus AAGCTCCACACGAACTTTCCAGACTCCACCTTCATAAAGGCTTTCTTTTGGACCATGGAA
. : . : . : . : . : . :
JMSF034M19+ TTCGACATTGAACTTGTTGATTTCATCGTTTATTGGCTCCACTGTGTAATCACTCATCAT
JMFF015G20+ TTCGACATTGAACTTGTTGATTTCATCGTTTATTGGCTCCACTGTGTAATCACTCATCAT
____________________________________________________________
consensus TTCGACATTGAACTTGTTGATTTCATCGTTTATTGGCTCCACTGTGTAATCACTCATCAT
. : . : . : . : . : . :
JMSF034M19+ CAATTTCATAACATCCATATCCCTCCTCTTACTTGGAGACGACATTCTTGAAAATGTTGT
JMFF015G20+ CAATTTCATAACATCCATATCCCTCCTCTTACTTGGAGACGACATTCTTGAAAATGTTGT
____________________________________________________________
consensus CAATTTCATAACATCCATATCCCTCCTCTTACTTGGAGACGACATTCTTGAAAATGTTGT
. : . : . : . : . : . :
JMSF034M19+ ATGTTTACTGTGAGACGAAGGGTATGAGGGGATCGACTAAGATTCGAGTTTGATTTTTGG
JMFF015G20+ ATGTTTACTGTGAGACGAAGGGTATGAGGGGATCGACTAAGATTCGAGTTTGATTTTTGG
____________________________________________________________
consensus ATGTTTACTGTGAGACGAAGGGTATGAGGGGATCGACTAAGATTCGAGTTTGATTTTTGG
. : . : . : . : . : . :
JMSF034M19+ TAAGTAATCGAAAAGCAAGGAAAAACCAAGAAAAGGGGGGGAAGAAGATAAGAAGAAGAA
JMFF015G20+ TAAGTAATCGAAAAGCAAGGAAAAACCAAGAAAAGGGGGGGAAGAAGATAAGAAGAAGAA
____________________________________________________________
consensus TAAGTAATCGAAAAGCAAGGAAAAACCAAGAAAAGGGGGGGAAGAAGATAAGAAGAAGAA
. : . : . : . : . : . :
JMSF034M19+ GGGAGAAAGGAGAAATTAATTAGATGAGGGAGAA
JMFF015G20+ GGGAGAAAGGAGAAATTAATTAGATGAGGGAGAAGACAAGGAAAGGAAGAGAAGAGTGAC
____________________________________________________________
consensus GGGAGAAAGGAGAAATTAATTAGATGAGGGAGAAGACAAGGAAAGGAAGAGAAGAGTGAC