Contig 003123:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF006O12Sequence639003123 (3)ref|XP_009799112.1|2e-87PREDICTED: serine/threonine-protein kinase HT1 [Nicotiana sylvestris] ref|XP_009741006821 (3)ref|XP_009614958.1|6e-79PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor
JMFF015C05Sequence523003123 (3)ref|XP_009626244.1|2e-62PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor738006821 (3)ref|XP_009614958.1|7e-79PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor
JMFF037G18Sequence524003123 (3)ref|XP_009626244.1|2e-62PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor671006821 (3)ref|XP_009614958.1|3e-61PREDICTED: serine/threonine-protein kinase HT1, partial [Nicotiana tomentosifor

Alignment

This contig is upended


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JMFF006O12+                                TAATAGCAAGTTTTCGGGTTTCAAGTCACGGTGTATGAT
                      ____________________________________________________________
consensus                                  TAATAGCAAGTTTTCGGGTTTCAAGTCACGGTGTATGAT
 
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JMFF006O12+           TCCATGAGAGTGTAAGCATTCCATTGCCCGAGCAATGTCAAGTGCAAACCCAATTGCCAC
                      ____________________________________________________________
consensus             TCCATGAGAGTGTAAGCATTCCATTGCCCGAGCAATGTCAAGTGCAAACCCAATTGCCAC
 
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JMFF006O12+           ACAAATATCTAGGCACCTTGGGCGCGTGTTGAGCAAGTATTTTCGCAGCGTCCCGCCTAG
JMFF037G18+                            TTGGGCGCGTGTTGAGCAAGTATTTTCGCAGCGTCCCGCCTAG
JMFF015C05+                            TTGGGCGCGTGTTGAGCAAGTATTTTCGCAGCGTCCCGCCTAG
                      ____________________________________________________________
consensus             ACAAATATCTAGGCACCTTGGGCGCGTGTTGAGCAAGTATTTTCGCAGCGTCCCGCCTAG
 
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JMFF006O12+           AAGTAGTTCAGTTACAATGACCATAACGGGCTCCTTACACGCACCAAGAAACTTCACTAA
JMFF037G18+           AAGTAGTTCAGTTACAATGACCATAACGGGCTCCTTACACGCACCAAGAAACTTCACTAA
JMFF015C05+           AAGTAGTTCAGTTACAATGACCATAACGGGCTCCTTACACGCACCAAGAAACTTCACTAA
                      ____________________________________________________________
consensus             AAGTAGTTCAGTTACAATGACCATAACGGGCTCCTTACACGCACCAAGAAACTTCACTAA
 
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JMFF006O12+           GTTCTTGTGTTGAACTCTGGATAACATTGCAACCTCTCTTGCAAATCGGGCATCCCTCTT
JMFF037G18+           GTTCTTGTGTTGAACTCTGGATAACATTGCAACCTCTCTTGCAAATCGGGCATCCCTCTT
JMFF015C05+           GTTCTTGTGTTGAACTCTGGATAACATTGCAACCTCTCTTGCAAATCGGGCATCCCTCTT
                      ____________________________________________________________
consensus             GTTCTTGTGTTGAACTCTGGATAACATTGCAACCTCTCTTGCAAATCGGGCATCCCTCTT
 
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JMFF006O12+           AGCAATCTCTTCTGGTGTGTCCCCTTTATGGATAATTTTGATTGCCACATTCTGGTTTTT
JMFF037G18+           AGCAATCTCTTCTGGTGTGTCCCCTTTATGGATAATTTTGATTGCCACATTCTGGTTTTT
JMFF015C05+           AGCAATCTCTTCTGGTGTGTCCCCTTTATGGATAATTTTGATTGCCACATTCTGGTTTTT
                      ____________________________________________________________
consensus             AGCAATCTCTTCTGGTGTGTCCCCTTTATGGATAATTTTGATTGCCACATTCTGGTTTTT
 
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JMFF006O12+           GTATTTTCCCTCATAGACTTTGGCATGAGCACCCTCTCCAATCTTGGGCCCAACAAAGAG
JMFF037G18+           GTATTTTCCCTCATAGACTTTGGCATGAGCACCCTCTCCAATCTTGGGCCCAACAAAGAG
JMFF015C05+           GTATTTTCCCTCATAGACTTTGGCATGAGCACCCTCTCCAATCTTGGGCCCAACAAAGAG
                      ____________________________________________________________
consensus             GTATTTTCCCTCATAGACTTTGGCATGAGCACCCTCTCCAATCTTGGGCCCAACAAAGAG
 
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JMFF006O12+           AAGCTTGGGATCAATCAACCATTTGGAGTCCAAATTGAAGTCTTCTCCAGTGTAGAACCC
JMFF037G18+           AAGCTTGGGATCAATCAACCATTTGGAGTCCAAATTGAAGTCTTCTCCAGTGTAGAACCC
JMFF015C05+           AAGCTTGGGATCAATCAACCATTTGGAGTCCAAATTGAAGTCTTCTCCAGTGTAGAACCC
                      ____________________________________________________________
consensus             AAGCTTGGGATCAATCAACCATTTGGAGTCCAAATTGAAGTCTTCTCCAGTGTAGAACCC
 
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JMFF006O12+           AGTCGCAGATCCCATTTCAACACCTGCACACCAAATTTATCTCTTCTACCTAGCTCAACT
JMFF037G18+           AGTCGCAGATCCCATTTCAACACCTGCACACCAAATTTATCTCTTCTACCTAGCTCAACT
JMFF015C05+           AGTCGCAGATCCCATTTCAACACCTGCACACCAAATTTATCTCTTCTACCTAGCTCAACT
                      ____________________________________________________________
consensus             AGTCGCAGATCCCATTTCAACACCTGCACACCAAATTTATCTCTTCTACCTAGCTCAACT
 
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JMFF006O12+           ATCTATTTATCAACCAGACTCCAGCTTGTATATCCAGGCATTTCAGCAAAATCAGTAAGT
JMFF037G18+           ATCTATTTATCAACCAGACTCCAGCTTGTATATCCAGGCATTTCAGCAAAATCAGTAAGT
JMFF015C05+           ATCTATTTATCAACCAGACTCCAGCTTGTATATCCAGGCATTTCAGCAAAATCAGTAAGT
                      ____________________________________________________________
consensus             ATCTATTTATCAACCAGACTCCAGCTTGTATATCCAGGCATTTCAGCAAAATCAGTAAGT
 
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JMFF006O12+           AGTTACTACTAAAACACTCAGAACACACAAAGCTCACGCCTTTCTTTAATTTGCGCTCTT
JMFF037G18+           AGTTACTACTAAAACACTCAGAACACACAAAGCTCACGCCTTTCTTTAATTTGCGCTCTT
JMFF015C05+           AGTTACTACTAAAACACTCAGAACACACAAAGCTCACGCCTTTCTTTAATTTGCGCTCTT
                      ____________________________________________________________
consensus             AGTTACTACTAAAACACTCAGAACACACAAAGCTCACGCCTTTCTTTAATTTGCGCTCTT