| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF015A18 | Sequence | 519 | 003122 (6) | ref|XP_002285355.1| | 7e-77 | PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] emb|CAN72849.1| | 711 | 019091 | ref|XP_002285355.1| | 1e-106 | PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] emb|CAN72849.1| |
| JMFN034C22 | Sequence | 598 | 003122 (6) | ref|XP_002285355.1| | 2e-116 | PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] emb|CAN72849.1| | |||||
| JMFN035H21 | Sequence | 555 | 003122 (6) | ref|XP_002285355.1| | 2e-76 | PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] emb|CAN72849.1| | |||||
| JMFN037L07 | Sequence | 626 | 003122 (6) | ref|XP_002285355.1| | 4e-110 | PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] emb|CAN72849.1| | |||||
| JMFS057E08 | Sequence | 617 | 003122 (6) | ref|XP_002285355.1| | 2e-95 | PREDICTED: LIM domain-containing protein WLIM1 [Vitis vinifera] emb|CAN72849.1| | |||||
| JMSF001F23 | Sequence | 404 | 000965 (39) | ref|XP_009777894.1| | 3e-63 | PREDICTED: photosystem I reaction center subunit VI-1, chloroplastic [Nicotiana | 113 | 003122 (6) | gb|KJB63465.1| | 7e-14 | hypothetical protein B456_010G026100 [Gossypium raimondii] gb|KJB63467.1| hypoth |
This contig is upended
. : . : . : . : . : . :
JMFN035H21+ AAACAACCAATATGCATATGTAGATTATGATGATGGAC
____________________________________________________________
consensus AAACAACCAATATGCATATGTAGATTATGATGATGGAC
. : . : . : . : . : . :
JMFN035H21+ AGGTACATTGAAGGAAATGCACACTGCAAAAACTCCACAATTTTAAATAATAAAGCATGA
____________________________________________________________
consensus AGGTACATTGAAGGAAATGCACACTGCAAAAACTCCACAATTTTAAATAATAAAGCATGA
. : . : . : . : . : . :
JMFN035H21+ CTCCATTTTTCAGGAGATGCAGATCGAAACAGGATTCGAATTAGGATTCTGCAGCAACCT
____________________________________________________________
consensus CTCCATTTTTCAGGAGATGCAGATCGAAACAGGATTCGAATTAGGATTCTGCAGCAACCT
. : . : . : . : . : . :
JMFN035H21+ CTGTGACCATAGGAGCTGAATTCTTCTCATTGTCTCCTCCCTCAAGCTGGCTCAAGTTTC
JMFN034C22+ TGGCTCAAGTTTC
____________________________________________________________
consensus CTGTGACCATAGGAGCTGAATTCTTCTCATTGTCTCCTCCCTCAAGCTGGCTCAAGTTTC
. : . : . : . : . : . :
JMFN035H21+ CCTTCTCCTTGATGAGTTGAAGATGGTGGTGTTTGCAGTAGAGGCGGCCCTCGTGTGCAA
JMFN034C22+ CCTTCTCCTTGATGAGTTGAAGATGGTGGTGTTTGCAGTAGAGGCGGCCCTCGTGTGCAA
JMFN037L07+ TTGATGAGTTGAAGATGGTGGTGTTTGCAGTAGAGGCGGCCCTCGTGTGCAA
JMFS057E08+ GCAGTAGAGNCGGCCCTCGTGTGCAA
____________________________________________________________
consensus CCTTCTCCTTGATGAGTTGAAGATGGTGGTGTTTGCAGTAGAGGCGGCCCTCGTGTGCAA
. : . : . : . : . : . :
JMFN035H21+ TATAGTTGGACGGGCTAATAACGCAGCCTCCATGGGTGCACTTGAAGCAGCTCTTATGGT
JMFN034C22+ TATAGTTGGACGGGCTAATAACGCAGCCTCCATGGGTGCACTTGAAGCAGCTCTTATGGT
JMFN037L07+ TATAGTTGGACGGGCTAATAACGCAGCCTCCATGGGTGCACTTGAAGCAGCTCTTATGGT
JMFS057E08+ TATAG-TGGACGGGCTAATAACGCAGCCTCCATGGGTGCACTTGAAGCAGCTCTTATGGT
____________________________________________________________
consensus TATAGTTGGACGGGCTAATAACGCAGCCTCCATGGGTGCACTTGAAGCAGCTCTTATGGT
. : . : . : . : . : . :
JMFN035H21+ AGGCACTCCCATTCACAGAAACCTTTTCGGTTGGGTACACCGTGTTCTTGCAGCCCACAC
JMFN034C22+ AGGCACTCCCATTCACAGAAACCTTTTCGGTTGGGTACACCGTGTTCTTGCAGCCCACAC
JMFN037L07+ AGGCACTCCCATTCACAGAAACCTTTTCGGTTGGGTACACCGTGTTCTTGCAGCCCACAC
JMFS057E08+ AGGCACTCCCATTCACAGAAACCTTTTCGGTTGGGTACACCGTGTTCTTGCAGCCCACAC
JMFF015A18+ CCTTTTCGGTTGGGTACACCGTGTTCTTGCAGCCCACAC
____________________________________________________________
consensus AGGCACTCCCATTCACAGAAACCTTTTCGGTTGGGTACACCGTGTTCTTGCAGCCCACAC
. : . : . : . : . : . :
JMFN035H21+ ATTTCTCCCTTGTCCCACCAAACATACTTGATGCTTTAGCCGCCAGTGGTTTCTCACTCA
JMFN034C22+ ATTTCTCCCTTGTCCCACCAAACATACTTGATGCTTTAGCCGCCAGTGGTTTCTCACTCA
JMFN037L07+ ATTTCTCCCTTGTCCCACCAAACATACTTGATGCTTTAGCCGCCAGTGGTTTCTCACTCA
JMFS057E08+ ATTTCTCCCTTGTCCCACCAAACATACTTGATGCTTTAGCCGCCAGTGGTTTCTCACTCA
JMFF015A18+ ATTTCTCCCTTGTCCCACCAAACATACTTGATGCTTTAGCCGCCAGTGGTTTCTCACTCA
____________________________________________________________
consensus ATTTCTCCCTTGTCCCACCAAACATACTTGATGCTTTAGCCGCCAGTGGTTTCTCACTCA
. : . : . : . : . : . :
JMFN035H21+ GGTCTGGTTTCTCTGGCTTCACAATCTTTGGTGTCCCTTCAAAGCTTTTGTCCAGACTCC
JMFN034C22+ GGTCTGGTTTCTCTGGCTTCACAATCTTTGGTGTCCCTTCAAAGCTTTTGTCCAGACTCC
JMFN037L07+ GGTCTGGTTTCTCTGGCTTCACAATCTTTGGTGTCCCTTCAAAGCTTTTGTCCAGACTCC
JMFS057E08+ GGTCTGGTTTCTCTGGCTTCACAATCTTTGGTGTCCCTTCAAAGCTTTTGTCCAGACTCC
JMFF015A18+ GGTCTGGTTTCTCTGGCTTCACAATCTTTGGTGTCCCTTCAAAGCTTTTGTCCAGACTCC
____________________________________________________________
consensus GGTCTGGTTTCTCTGGCTTCACAATCTTTGGTGTCCCTTCAAAGCTTTTGTCCAGACTCC
. : . : . : . : . : . :
JMFN035H21+ CAGTTCTCTTGAAGAGCTGATCAAAGTGAGGCCTGCA
JMFN034C22+ CAGTTCTCTTGAAGAGCTGATCAAAGTGAGGCCTGCAATACAGAACTCCCTCAAAGGAGT
JMFN037L07+ CAGTTCTCTTGAAGAGCTGATCAAAGTGAGGCCTGCAATACAGAACTCCCTCAAAGGAGT
JMFS057E08+ CAGTTCTCTTGAAGAGCTGATCAAAGTGAGGCCTGCAATACAGAACTCCCTCAAAGGAGT
JMFF015A18+ CAGTTCTCTTGAAGAGCTGATCAAAGTGAGGCCTGCAATACAGAACTCCCTCAAAGGAGT
____________________________________________________________
consensus CAGTTCTCTTGAAGAGCTGATCAAAGTGAGGCCTGCAATACAGAACTCCCTCAAAGGAGT
. : . : . : . : . : . :
JMFN034C22+ TGTAATTCCCAAGCTTGAGAGTGCCTTTGCAGTGGTGGCATCTGAAACAGGCTTTGTGGT
JMFN037L07+ TGTAATTCCCAAGCTTGAGAGTGCCTTTGCAGTGGTGGCATCTGAAACAGGCTTTGTGGT
JMFS057E08+ TGTAATTCCCAAGCTTGAGAGTGCCTTTGCAGTGGTGGCATCTGAAACAGGCTTTGTGGT
rJMSF001F23- AACAGGCTTTGTGGT
JMFF015A18+ TGTAATTCCCAAGCTTGAGAGTGCCTTTGCAGTGGTGGCATCTGAAACAGGCTTTGTGGT
____________________________________________________________
consensus TGTAATTCCCAAGCTTGAGAGTGCCTTTGCAGTGGTGGCATCTGAAACAGGCTTTGTGGT
. : . : . : . : . : . :
JMFN034C22+ AGACTCTATTATCTGCAGTTAACTTGTCCACCAGATACACAGTCTTGTCACAGGCCATGC
JMFN037L07+ AGACTCTATTATCTGCAGTTAACTTGTCCACCAGATACACAGTCTTGTCACAGGCCATGC
JMFS057E08+ AGACTCTATTATCTGCAGTTAACTTGTCCACCAGATACACAGTCTTGTCACAGGCCATGC
rJMSF001F23- ANACTCTATTATCTGCAGTTAACTTGTCCACCAGATACACAGTCTTGTCACAGGCCATGC
JMFF015A18+ AGACTCTATTATCTGCAGTTAACTTGTCCACCAGATACACAGTCTTGTCACAGGCCATGC
____________________________________________________________
consensus AGACTCTATTATCTGCAGTTAACTTGTCCACCAGATACACAGTCTTGTCACAGGCCATGC
. : . : . : . : . : . :
JMFN034C22+ ACTTCTGTGTGGTTCCTGCGAACGACGCCATGATCGACTTTGAATCTCTCAAGAAAAATA
JMFN037L07+ ACTTCTGTGTGGTTCCTGCGAACGACGCCATGATCGACTTTGAATCTCTCAAGAAAAATA
JMFS057E08+ ACTTCTGTGTGGTTCCTGCGAACGACGCCATGATCGACTTTGAATCTCTCAAGAAAAATA
rJMSF001F23- ACTTCTGTGTGGTTCCTGCGAACGACGCCNTGATCGAC
JMFF015A18+ ACTTCTGTGTGGTTCCTGCGAACGACGCCATGATCGACTTTGAATCTCTCAAGAAAAATA
____________________________________________________________
consensus ACTTCTGTGTGGTTCCTGCGAACGACGCCATGATCGACTTTGAATCTCTCAAGAAAAATA
. : . : . : . : . : . :
JMFN034C22+ GATATATAATTATGGTTGTCTGTAACTATATATATATCTCTC
JMFN037L07+ GATATATAATTATGGTTGTCTGTAACTATATATATATCTCTCTCTCTTCTTCTCTTCTCT
JMFS057E08+ GATATATAATTATGGTTGTCTGTAAC--TATATATATCTCTCTCTCTTCTTCTCTTCTCT
JMFF015A18+ GATATATAATTATGGTTGTCTGTAACTATATATATATCTCTCTCTCTTCTTCTCTTCTCT
____________________________________________________________
consensus GATATATAATTATGGTTGTCTGTAACTATATATATATCTCTCTCTCTTCTTCTCTTCTCT
. : . : . : . : . : . :
JMFN037L07+ TCTGGTTTCTGCTCCAGAAATGAGGTATGGAAGA
JMFS057E08+ TCTGGTTTCTGCTCCAGAAATGAGGTATGGAAGATAAAGAGAGTGGGGAGATAA
JMFF015A18+ TCTGGTTTCTGCTCCAGAAATGAGGTATGGAAGATAAAGAGAGTGGGGAGATAAGGGAAG
____________________________________________________________
consensus TCTGGTTTCTGCTCCAGAAATGAGGTATGGAAGATAAAGAGAGTGGGGAGATAAGGGAAG