Contig 003113:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF009P02Sequence584003113 (11)ref|XP_008245127.1|3e-62PREDICTED: proactivator polypeptide-like 1 [Prunus mume] ref|XP_008245133.1| PRE
JMFF013E13Sequence511003113 (11)ref|XP_006349570.1|9e-33PREDICTED: proactivator polypeptide-like isoform X1 [Solanum tuberosum] ref|XP_617003113 (11)ref|XP_008245127.1|8e-63PREDICTED: proactivator polypeptide-like 1 [Prunus mume] ref|XP_008245133.1| PRE
JMFF024B12Sequence411003113 (11)ref|XP_007207246.1|7e-35hypothetical protein PRUPE_ppa009037m1g [Prunus persica] gb|EMJ08445.1| hypothet
JMFF024F24Sequence511003113 (11)ref|XP_006349570.1|7e-47PREDICTED: proactivator polypeptide-like isoform X1 [Solanum tuberosum] ref|XP_778003113 (11)ref|XP_008245127.1|5e-82PREDICTED: proactivator polypeptide-like 1 [Prunus mume] ref|XP_008245133.1| PRE
JMFF045D05Sequence641003113 (11)ref|XP_008245127.1|7e-73PREDICTED: proactivator polypeptide-like 1 [Prunus mume] ref|XP_008245133.1| PRE643003113 (11)ref|XP_007207246.1|5e-53hypothetical protein PRUPE_ppa009037m1g [Prunus persica] gb|EMJ08445.1| hypothet
JMFN003A11Sequence597003113 (11)ref|XP_008245127.1|1e-76PREDICTED: proactivator polypeptide-like 1 [Prunus mume] ref|XP_008245133.1| PRE
JMFN017C05Sequence641003113 (11)ref|XP_008245127.1|4e-78PREDICTED: proactivator polypeptide-like 1 [Prunus mume] ref|XP_008245133.1| PRE
JMFN036L06Sequence491003113 (11)ref|XP_008388326.1|7e-49PREDICTED: proactivator polypeptide-like 1 [Malus domestica] ref|XP_008388327.1|

Alignment

This contig is upended


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rJMFF045D05-                                                  CCTTATGGCGGATCACCCTG
                      ____________________________________________________________
consensus                                                     CCTTATGGCGGATCACCCTG
 
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rJMFF045D05-          GAGAGTTTTTTTTTTTTTTTTGATAAGAAAGATTATTGTATTGTACACAGAGAGATGTAC
rJMFF013E13-                                          TTATTGTATTGTACACAGAGAGATGTAC
rJMFF024F24-                                             TTGTATTGTACACAGAGAGATGTAC
                      ____________________________________________________________
consensus             GAGAGTTTTTTTTTTTTTTTTGATAAGAAAGATTATTGTATTGTACACAGAGAGATGTAC
 
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rJMFF045D05-          TGGTATGAACACTTTACACACATAATATGAATCTTCTTCGCGTTTATACACCACACCAGG
rJMFF013E13-          TGGTATGAACACTTTACACACATAATATGAATCTTCTTCGCGTTTATACACCACACCAGG
rJMFF024F24-          TGGTATGAACACTTTACACACATAATATGAATCTTCTTCGCGTTTATACACCACACCAGG
                      ____________________________________________________________
consensus             TGGTATGAACACTTTACACACATAATATGAATCTTCTTCGCGTTTATACACCACACCAGG
 
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rJMFF024B12-                                                   GGGTACTATGGGGAAGCTT
rJMFF045D05-          AGGCGAAGAAGCAAACAATAGTTTACAGTGTTGGCTGTTAAGGGTACTATGGGGAAGCTT
rJMFF013E13-          AGGCGAAGAAGCAAACAATAGTTTACAGTGTTGGCTGTTAAGGGTACTATGGGGAAGCTT
rJMFF024F24-          AGGCGAAGAAGCAAACAATAGTTTACAGTGTTGGCTGTTAAGGGTACTATGGGGAAGCTT
                      ____________________________________________________________
consensus             AGGCGAAGAAGCAAACAATAGTTTACAGTGTTGGCTGTTAAGGGTACTATGGGGAAGCTT
 
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rJMFF024B12-          TGGTTTTCTANCATGCANAATGCNTCNAGGCGTCTGNCNCTGGCAACGCCTGTTCTACTA
rJMFF045D05-          TGGTTTTCTAAGATGCAGAATGCATCGAGGCGTCTGTCACTGGCAACGCCTGTTCTACTA
rJMFF013E13-          TGGTTTTCTAAGATGCAGAATGCATCGAGGCGTCTGTCACTGGCAACGCCTGTTCTACTA
rJMFF024F24-          TGGTTTTCTAAGATGCAGAATGCATCGAGGCGTCTGTCACTGGCAACGCCTGTTCTACTA
                      ____________________________________________________________
consensus             TGGTTTTCTAAGATGCAGAATGCATCGAGGCGTCTGTCACTGGCAACGCCTGTTCTACTA
 
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rJMFF024B12-          CNGCTGCAGGGGAATCNCAGGCATGGANAATGGTGCACACGTCGNTTGCTTCTANGAACT
rJMFF045D05-          CGGCTGCAGGGGAATCACAGGCATGGAGAATGGTGCACACGTCGTTTGCTTCTAGGAACT
rJMFF013E13-          CGGCTGCAGGGGAATCACAGGCATGGAGAATGGTGCACACGTCGTTTGCTTCTAGGAACT
rJMFF024F24-          CGGCTGCAGGGGAATCACAGGCATGGAGAATGGTGCACACGTCGTTTGCTTCTAGGAACT
JMFN003A11+                                                                      T
JMFN017C05+                                                                  GAACT
                      ____________________________________________________________
consensus             CGGCTGCAGGGGAATCACAGGCATGGAGAATGGTGCACACGTCGTTTGCTTCTAGGAACT
 
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rJMFF024B12-          GCTCGGNGTTGACNANGATGACGGNANCNTATTCNANAACCAGTTTCTTACACTTTTGGG
rJMFF045D05-          GCTCGGCGTTGACGAGGATGACGGGAGCATATTCGAAAACCAGTTTCTTACACTTTTGGG
rJMFF013E13-          GCTCGGCGTTGACGAGGATGACGGGAGCATATTCGAAAACCAGTTTCTTACACTTTTGGG
rJMFF024F24-          GCTCGGCGTTGACGAGGATGACGGGAGCATATTCGAAAACCAGTTTCTTACACTTTTGGG
JMFN003A11+           GCTCGGCGTTGACGAGGATGACGGGAGCATATTCGAAAACCAGTTTCTTACACTTTTGGG
JMFN017C05+           GCTCGGCGTTGACGAGGATGACGGGAGCATATTCGAAAACCAGTTTCTTACACTTTTGGG
JMFF045D05+                             TGACGGGAGCATATTCGAAAACCAGTTTCTTACACTTTGNGG
                      ____________________________________________________________
consensus             GCTCGGCGTTGACGAGGATGACGGGAGCATATTCGAAAACCAGTTTCTTACACTTTTGGG
 
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rJMFF024B12-          CATAGTTCTTGGNTGAATCACGTGCCTTCATGAGCAGCTCGAGTATCTCTAACTGANTGT
rJMFF045D05-          CATAGTTCTTGGCTGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
rJMFF013E13-          CATAGTTCTTGGCTGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
rJMFF024F24-          CATAGTTCTTGGCTGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
JMFN003A11+           CATAGTTCTTGGCTGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
JMFN017C05+           CATAGTTCTTGGCTGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
JMFF009P02+                        TGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
JMFF045D05+           CATAGTTCTTGGCTGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
                      ____________________________________________________________
consensus             CATAGTTCTTGGCTGAATCACATGCCTTCAGGAGCAGTTCGAGTATCTCTAACTGAGTGT
 
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rJMFF024B12-          CGGGATCTTTCGACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
rJMFF045D05-          CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
rJMFF013E13-          CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
rJMFF024F24-          CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
JMFN003A11+           CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
JMFN017C05+           CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
JMFF009P02+           CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
JMFF024F24+                                     TCGGATACAGCATAATGGCATAAATTGCAGGTAT
JMFN036L06+                  TTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
JMFF045D05+           CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
JMFF013E13+                                       GGATACAGCATAATGGCATAAATTGCAGGTAT
                      ____________________________________________________________
consensus             CGGGATCTTTCAACTTCACTAACACCTCGGATACAGCATAATGGCATAAATTGCAGGTAT
 
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rJMFF024B12-          TGTTAGAAACTTGCTGATAAATGAAAGCAACTTTTTGACATACGGCAACTTCTTGACAGA
rJMFF045D05-          TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
rJMFF013E13-          TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
rJMFF024F24-          TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
JMFN003A11+           TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
JMFN017C05+           TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
JMFF009P02+           TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
JMFF024F24+           TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
JMFN036L06+           TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
JMFF045D05+           TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
JMFF013E13+           TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
                      ____________________________________________________________
consensus             TGTTAGAAACTTGCTGAGAAATGAAAGCAACTTTTTGACATAGGGCAACTTCTTGACAGA
 
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rJMFF024B12-          ATTGTTGAGGCTGTATTGATGANAGCTCTAAG                            
rJMFF045D05-          ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAG-AAAGAGGGCCATAATAAATTCACC
rJMFF013E13-          ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
rJMFF024F24-          ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
JMFN003A11+           ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
JMFN017C05+           ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
JMFF009P02+           ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
JMFF024F24+           ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
JMFN036L06+           ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
JMFF045D05+           ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
JMFF013E13+           ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
                      ____________________________________________________________
consensus             ATTGTTGAGGCTGTATTGATGAGAGCTCTAAGAAGAAAAGAGGGCCATAATAATTCACCA
 
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rJMFF045D05-          ATGTGACGCACTGCTGCTTGTATG                                    
rJMFF013E13-          ATGTGACGCACTGCTGCTTGTATGCACGCAGC                            
rJMFF024F24-          ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
JMFN003A11+           ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
JMFN017C05+           ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
JMFF009P02+           ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
JMFF024F24+           ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
JMFN036L06+           ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
JMFF045D05+           ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
JMFF013E13+           ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
                      ____________________________________________________________
consensus             ATGTGACGCACTGCTGCTTGTATGCACGCAGCTTAGAGCAAGACTTAAGAAGGAGACCAA
 
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rJMFF024F24-          TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
JMFN003A11+           TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
JMFN017C05+           TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
JMFF009P02+           TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
JMFF024F24+           TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
JMFN036L06+           TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
JMFF045D05+           TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
JMFF013E13+           TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATT-TT
                      ____________________________________________________________
consensus             TAATCTCTTCTTGAGTCTTGTTATTTTTCAGGTAAGTGAGTGCCTGACTTGTAAATTCTT
 
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rJMFF024F24-          CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
JMFN003A11+           CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
JMFN017C05+           CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
JMFF009P02+           CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
JMFF024F24+           CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
JMFN036L06+           CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
JMFF045D05+           CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
JMFF013E13+           CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
                      ____________________________________________________________
consensus             CGCACATGGTGCAAACTATATCATTTCCCTTGGCTACTTTTACAGCTTGAACTTCTTGTC
 
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rJMFF024F24-          TCTCTGGAATATCTACAGTTTGTGTACTAAGGA                           
JMFN003A11+           TCTCTGGAATATCTACAGTTTGTGTACTAAGGACAGAGCTCGCCAAATCTCTGGCACTAC
JMFN017C05+           TCTCTGGAATATCTACAGTTTGTGTACTAAGGACAGAGCTCGCCAAATCTCTGGCACTAC
JMFF009P02+           TCTCTGGAATATCTACAGTTTGTGTACTAAGGACAGAGCTCGCCAAATCTCTGGCACTAC
JMFF024F24+           TCTCTGGAATATCTACAGTTTGTGTACTAAGGACAGAGCTCGCCAAATCTCTGGCACTAC
JMFN036L06+           TCTCTGGAATATCTACACCCCGTGTACTAAGGACAGAGCTCGCCAAATCGCTGGCACTAC
JMFF045D05+           TCTCTGGAATATCTACAGTTTGTGTACTAAGGACAGAGCTCGCCAAATCTCTGGCACTAC
JMFF013E13+           TCTCTGGAATATCTACAGTTTGTGTACTAAGGACAGAGCTCGCCAAATCTCTGGCACTAC
                      ____________________________________________________________
consensus             TCTCTGGAATATCTACAGTTTGTGTACTAAGGACAGAGCTCGCCAAATCTCTGGCACTAC
 
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JMFN003A11+           AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTG    
JMFN017C05+           AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTGCCTG
JMFF009P02+           AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTGCCTG
JMFF024F24+           AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTGCCTG
JMFN036L06+           AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTGCCTG
JMFF045D05+           AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTGCCTG
JMFF013E13+           AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTGCCTG
                      ____________________________________________________________
consensus             AGCACCAGCTAGCACCTAGTATGACAAGAACTAAGCAAACCTTCATATCCATGCTGCCTG
 
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JMFN017C05+           CGAAAAGGTTGGGGAGAAGGAGAGAGACGACTGAGG                        
JMFF009P02+           CGAAAAGGTTGGGGAGAAGGAGAGAGACGACTGAGGCTTTCTTCAGCTTCAAAGAAT   
JMFF024F24+           CGAAAAGGTTGGGGAGAAGGAGAGAGACGACTGAGGCTTTCTTCAGCTTCAAAGAAT   
JMFN036L06+           CGAAAAGGTTGGGGAGAA                                          
JMFF045D05+           CGAAAAGGTTGGGGAGAAGGAGAGAGACGACTGAGGCTTTCTTCAGCTTCAAAGAAT   
JMFF013E13+           CGAAAAGGTTGGGGAGAAGGAGAGAGACGACTGAGGCTTTCTTCAGCTTCAAAGAATAAT
                      ____________________________________________________________
consensus             CGAAAAGGTTGGGGAGAAGGAGAGAGACGACTGAGGCTTTCTTCAGCTTCAAAGAATAAT