Contig 003108:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF011D23Sequence506003108 (2)emb|CDP00973.1|1e-41unnamed protein product [Coffea canephora]610004099 (2)ref|XP_009764826.1|5e-34PREDICTED: receptor-like protein kinase HSL1 [Nicotiana sylvestris]
JMFF042L06Sequence639003108 (2)emb|CDP00973.1|1e-61unnamed protein product [Coffea canephora]640004099 (2)ref|XP_009764826.1|1e-30PREDICTED: receptor-like protein kinase HSL1 [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFF042L06+                                TCGCCGGTAGCCGCCACGGGCTGAACCCGCCATTCTCAT
                      ____________________________________________________________
consensus                                  TCGCCGGTAGCCGCCACGGGCTGAACCCGCCATTCTCAT
 
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JMFF042L06+           TGAAATTGAGAACTTCAAGATTACTGAGATTAGTGACCGACAAAGGAAACTCACCGGTGA
                      ____________________________________________________________
consensus             TGAAATTGAGAACTTCAAGATTACTGAGATTAGTGACCGACAAAGGAAACTCACCGGTGA
 
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JMFF042L06+           AGAGGTTGAAGGATAAATCAAGTGACCTTAAAGCCTGCAAAGGCGTCAAGTCCGGCAAAG
JMFF011D23+                                             CTGCAAAGGCGTCAAGTCCGGCAAAG
                      ____________________________________________________________
consensus             AGAGGTTGAAGGATAAATCAAGTGACCTTAAAGCCTGCAAAGGCGTCAAGTCCGGCAAAG
 
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JMFF042L06+           CTCCGGTCACATATGTACCCGTCATGTTTAGCTCTTCCAACACCGAGCAGTTGGTGACGC
JMFF011D23+           CTCCGGTCACATATGTACCCGTCATGTTTAGCTCTTCCAACACCGAGCAGTTGGTGACGC
                      ____________________________________________________________
consensus             CTCCGGTCACATATGTACCCGTCATGTTTAGCTCTTCCAACACCGAGCAGTTGGTGACGC
 
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JMFF042L06+           CGACAGGAAACCGATTTCCATGGAAATGATTCTGGCCGAGGCGAAGAACTCGCAGCTTTG
JMFF011D23+           CGACAGGAAACCGATTTCCATGGAAATGATTCTGGCCGAGGCGAAGAACTCGCAGCTTTG
                      ____________________________________________________________
consensus             CGACAGGAAACCGATTTCCATGGAAATGATTCTGGCCGAGGCGAAGAACTCGCAGCTTTG
 
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JMFF042L06+           GCAAATAATCACAGACGCCTTCTGGAAACCGGCCTGATAATGACCACCCAGAAATATCGA
JMFF011D23+           GCAAATAATCACAGACGCCTTCTGGAAACCGGCCTGATAATGACCACCCAGAAATATCGA
                      ____________________________________________________________
consensus             GCAAATAATCACAGACGCCTTCTGGAAACCGGCCTGATAATGACCACCCAGAAATATCGA
 
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JMFF042L06+           TCTTCACAACATAACCAAGATCATCACACCCAATCCCGGAATAGTTGCAAACATGTTTTC
JMFF011D23+           TCTTCACAACATAACCAAGATCATCACACCCAATCCCGGAATAGTTGCAAACATGTTTTC
                      ____________________________________________________________
consensus             TCTTCACAACATAACCAAGATCATCACACCCAATCCCGGAATAGTTGCAAACATGTTTTC
 
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JMFF042L06+           CATCCCAGCCAGCCATCAAGTCTCCTGACAGAGACTTCTTCATAAGATCAAAGAACTCAG
JMFF011D23+           CATCCCAGCCAGCCATCAAGTCTCCTGACAGAGACTTCTTCATAAGATCAAAGAACTCAG
                      ____________________________________________________________
consensus             CATCCCAGCCAGCCATCAAGTCTCCTGACAGAGACTTCTTCATAAGATCAAAGAACTCAG
 
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JMFF042L06+           ACTGGTTGTTCTTGCCCGACACAGATAATAACAACATCATCAACAAAAGAGAAAAGAACA
JMFF011D23+           ACTGGTTGTTCTTGCCCGACACAGATAATAACAACATCATCAACAAAAGAGAAAAGAACA
                      ____________________________________________________________
consensus             ACTGGTTGTTCTTGCCCGACACAGATAATAACAACATCATCAACAAAAGAGAAAAGAACA
 
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JMFF042L06+           CAATCTGCTGAATTGCCATTGAGAATAGGAAAAGGAGAAAAACAAAATAATTTTTTGTTT
JMFF011D23+           CAATCTGCTGAATTGCCATTGAGAATAGGAAAAGGAGAAAAACAAAATAATTTTTTGTTT
                      ____________________________________________________________
consensus             CAATCTGCTGAATTGCCATTGAGAATAGGAAAAGGAGAAAAACAAAATAATTTTTTGTTT
 
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JMFF042L06+           GACCGCAGAGTAGAGAGATATGGAGGGAGAACTGGAAGGAGAAAGTTGTGTTGGTTAAGT
JMFF011D23+           GACCGCAGAGTAGAGAGATATGGAGGGAGAACTGGAAGGAGAAAGTTGTGTTGGTTAAGT
                      ____________________________________________________________
consensus             GACCGCAGAGTAGAGAGATATGGAGGGAGAACTGGAAGGAGAAAGTTGTGTTGGTTAAGT