Contig 003101:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF010H13Sequence600003101 (4)ref|XP_002871948.1|1e-26hypothetical protein ARALYDRAFT_488963 [Arabidopsis lyrata subsp. lyrata] gb|EF521003101 (4)ref|XP_009763711.1|7e-08PREDICTED: protein trichome birefringence-like 5 [Nicotiana sylvestris]
JMSF021N06Sequence635003101 (4)ref|XP_009763711.1|1e-136PREDICTED: protein trichome birefringence-like 5 [Nicotiana sylvestris]721003101 (4)gb|KDO61978.1|2e-83hypothetical protein CISIN_1g023751mg [Citrus sinensis]

Alignment

This contig is upended


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rJMFF010H13-                             AATTTTCATCAAGCATAGGATCAAGTGATGAACACAGTAGA
                      ____________________________________________________________
consensus                                AATTTTCATCAAGCATAGGATCAAGTGATGAACACAGTAGA
 
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rJMFF010H13-          GTTTAGCAATCAGGGCTTACTAAATCCTACAAAAGATACATAAAATTTACAACAACGATC
                      ____________________________________________________________
consensus             GTTTAGCAATCAGGGCTTACTAAATCCTACAAAAGATACATAAAATTTACAACAACGATC
 
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rJMFF010H13-          CTAAAGCGAAAAGCTAAGTAAATCAACATAACCAAAAATAATCAGTCAATGAAAAAATTA
rJMSF021N06-                                                          ATGAAAAAATTA
                      ____________________________________________________________
consensus             CTAAAGCGAAAAGCTAAGTAAATCAACATAACCAAAAATAATCAGTCAATGAAAAAATTA
 
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rJMFF010H13-          CAAATGGGACTTCTCATATTGAAAGAGCAAGGCCAGAACTCTTACTAGAGGATTAACAAT
rJMSF021N06-          CAAATGGGACTTCTCATATTGAAAGAGCAAGGCCAGAACTCTTACTAGAGGATTAACAAT
                      ____________________________________________________________
consensus             CAAATGGGACTTCTCATATTGAAAGAGCAAGGCCAGAACTCTTACTAGAGGATTAACAAT
 
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rJMFF010H13-          CCCTTTCGTTAATGTGAAGACATCATCGATCTCTTCACTAAGGAAAGATTGTTAACCCCA
rJMSF021N06-          CCCTTTCGTTAATGTGAAGACATCATCGATCTCTTCACTAAGGAAAGATTGTTAACCCCA
                      ____________________________________________________________
consensus             CCCTTTCGTTAATGTGAAGACATCATCGATCTCTTCACTAAGGAAAGATTGTTAACCCCA
 
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rJMFF010H13-          TCCCGTCCCCTAAACAAGTATAGCAATCCTCGTACTGAGTATTTGGATGAGTTAAAAATA
rJMSF021N06-          TCCCGTCCCCTAAACAAGTATAGCAATCCTCGTACTGAGTATTTGGATGAGTTAAAAATA
                      ____________________________________________________________
consensus             TCCCGTCCCCTAAACAAGTATAGCAATCCTCGTACTGAGTATTTGGATGAGTTAAAAATA
 
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rJMFF010H13-          AAGTAAATATGGGATTAGAAAGGCTTGTTGCTAGTCCTATTCCCACCCAATCCATGAACT
rJMSF021N06-          AAGTAAATATGGGATTAGAAAGGCTTGTTGCTAGTCCTATTCCCACCCAATCCATGAACT
                      ____________________________________________________________
consensus             AAGTAAATATGGGATTAGAAAGGCTTGTTGCTAGTCCTATTCCCACCCAATCCATGAACT
 
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rJMFF010H13-          AAACAAACCTTGTTAATGTTCATTGATTGAAGAGGTTTGTTTCAAGACCAAAGTGGCGTA
rJMSF021N06-          AAACAAACCTTGTTAATGTTCATTGATTGAAGAGGTTTGTTTCAAGACCAAAGTGGCGTA
                      ____________________________________________________________
consensus             AAACAAACCTTGTTAATGTTCATTGATTGAAGAGGTTTGTTTCAAGACCAAAGTGGCGTA
 
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rJMFF010H13-          GATTAGCTCATTCCAAGCATCAGGGACTCCCGGGAGACACCNNTGGNTGCANTCTTGCCG
rJMSF021N06-          GATTAGCTCATTCCAAGCATCAGGGACTCCCGGGAGACACCAATGGCTGCAATCTTGCCG
                      ____________________________________________________________
consensus             GATTAGCTCATTCCAAGCATCAGGGACTCCCGGGAGACACCAATGGCTGCAATCTTGCCG
 
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rJMSF021N06-          TTTGGTGGAAACCTTTTTCCCGTCGGTCACCATTTTCCCGTATACAGATGGGTGGCCATC
                      ____________________________________________________________
consensus             TTTGGTGGAAACCTTTTTCCCGTCGGTCACCATTTTCCCGTATACAGATGGGTGGCCATC
 
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rJMSF021N06-          CTTCCGGAAATTGGTCAAACTTGTCACATTTAGTAGCACAACGGGTGTCTGCATTTCTTT
                      ____________________________________________________________
consensus             CTTCCGGAAATTGGTCAAACTTGTCACATTTAGTAGCACAACGGGTGTCTGCATTTCTTT
 
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rJMSF021N06-          GATCACTTCTTCCACTATCTTCATTTTCAAAGGATAGTTATCAAGGATGGCTCCACTCAA
                      ____________________________________________________________
consensus             GATCACTTCTTCCACTATCTTCATTTTCAAAGGATAGTTATCAAGGATGGCTCCACTCAA
 
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rJMSF021N06-          AACCGGTTTACTCTCACCATTACAGGTTCCACCAGAATCCCACTCTCCACCTCTGAAATG
JMSF021N06+                                                                TGAAATG
                      ____________________________________________________________
consensus             AACCGGTTTACTCTCACCATTACAGGTTCCACCAGAATCCCACTCTCCACCTCTGAAATG
 
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rJMSF021N06-          AGCAGATGAGTACCCTCGATAGAAAACCAACTTTTTCTGTTTCAGATGTTCATCGATCCA
JMSF021N06+           AGCAGATGAGTACCCTCGATAGAAAACCAACTTTTTCTGTTTCAGATGTTCATCGATCCA
                      ____________________________________________________________
consensus             AGCAGATGAGTACCCTCGATAGAAAACCAACTTTTTCTGTTTCAGATGTTCATCGATCCA
 
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rJMSF021N06-          ACTTGCCCAGGTCTTCAAGGCTCTTCTATAAGCTTCAACTGCATCAAAT           
JMSF021N06+           ACTTGCCCAGGTCTTCAAGGCTCTTCTATAAGCTTCAACTGCATCAAATTTGGGGTAAAT
                      ____________________________________________________________
consensus             ACTTGCCCAGGTCTTCAAGGCTCTTCTATAAGCTTCAACTGCATCAAATTTGGGGTAAAT
 
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JMSF021N06+           ATACTCGCCCTCCTTATAGTAATTTTTCCCCCTCGCTGTCTTTCCGTGGGTCCACCAATG
                      ____________________________________________________________
consensus             ATACTCGCCCTCCTTATAGTAATTTTTCCCCCTCGCTGTCTTTCCGTGGGTCCACCAATG
 
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JMSF021N06+           TCCAGTATTGAAAACGAGAATGTCAGCACGCTTCCAACGAGGAGCTGTTTTATCAATGCG
                      ____________________________________________________________
consensus             TCCAGTATTGAAAACGAGAATGTCAGCACGCTTCCAACGAGGAGCTGTTTTATCAATGCG
 
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JMSF021N06+           ATCTATTGATAAAGTTGGATTTGAGCTACCACGTGCATTGATGCGCACTCCCTCTTTGAC
                      ____________________________________________________________
consensus             ATCTATTGATAAAGTTGGATTTGAGCTACCACGTGCATTGATGCGCACTCCCTCTTTGAC
 
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JMSF021N06+           AAGAAAATGTGATCGCACAAATTCCACTGTACAGTTAAAATCCTCAAATTTGAAAACATA
                      ____________________________________________________________
consensus             AAGAAAATGTGATCGCACAAATTCCACTGTACAGTTAAAATCCTCAAATTTGAAAACATA
 
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JMSF021N06+           GTAGCCTCTTCCCTTTGTTATTTTATATCCATGTATCTCATACATTTTACTCTTATTGAC
                      ____________________________________________________________
consensus             GTAGCCTCTTCCCTTTGTTATTTTATATCCATGTATCTCATACATTTTACTCTTATTGAC
 
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JMSF021N06+           CAGTCCTTCACGAAGAACGCAGAGCAGTGACTCAAACTGGTTCCGGTTCATGGAATCCCC
                      ____________________________________________________________
consensus             CAGTCCTTCACGAAGAACGCAGAGCAGTGACTCAAACTGGTTCCGGTTCATGGAATCCCC
 
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JMSF021N06+           AACAAGCATCAGCCTTTTCCCTTTCAATCTCACCAAAAAGTCAGTTGCATTAAACCTTGG
                      ____________________________________________________________
consensus             AACAAGCATCAGCCTTTTCCCTTTCAATCTCACCAAAAAGTCAGTTGCATTAAACCTTGG
 
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JMSF021N06+           AAGATCACAGCCATCAGGTTTCCATTTCCAATTGAGATACTGAGAGTCAGGCCTGCCATT
JMFF010H13+           AAGATCACAGCCATCAGGTTTCCATTTCCAATTGAGATACTGAGAGTCAGGCCTGCCATT
                      ____________________________________________________________
consensus             AAGATCACAGCCATCAGGTTTCCATTTCCAATTGAGATACTGAGAGTCAGGCCTGCCATT
 
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JMSF021N06+           GCGCTGACAATCAAAGGCTTCATCCAC                                 
JMFF010H13+           GCGCTGACAATCAAAGGCTTCATCCACGTAGGGGCAAGACCCAGGACTATAAATAGGGTG
                      ____________________________________________________________
consensus             GCGCTGACAATCAAAGGCTTCATCCACGTAGGGGCAAGACCCAGGACTATAAATAGGGTG
 
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JMFF010H13+           GTGGTCCTCATCATTCACCCAACTCCCTTTATAGAAATCACACCCTTGAGCTCTATCAGC
                      ____________________________________________________________
consensus             GTGGTCCTCATCATTCACCCAACTCCCTTTATAGAAATCACACCCTTGAGCTCTATCAGC
 
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JMFF010H13+           CCAACGACTCTCCTCCTTAGCGGCATTGCTCGACGGCACGGCCGTCACAACAACACTCGC
                      ____________________________________________________________
consensus             CCAACGACTCTCCTCCTTAGCGGCATTGCTCGACGGCACGGCCGTCACAACAACACTCGC
 
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JMFF010H13+           CTCCTCAGTGACATTGGAATCAGCCGCTTCGCCCCCCACGACGATTGGGAAATTGGGCGT
                      ____________________________________________________________
consensus             CTCCTCAGTGACATTGGAATCAGCCGCTTCGCCCCCCACGACGATTGGGAAATTGGGCGT
 
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JMFF010H13+           CGGTTGTTCATCGATTACCTCGAAATCTGGGATCGAGACGACGGGTTTAGGCGTCGGGTT
                      ____________________________________________________________
consensus             CGGTTGTTCATCGATTACCTCGAAATCTGGGATCGAGACGACGGGTTTAGGCGTCGGGTT
 
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JMFF010H13+           TGATTCATTGCGCGGGTCCTTAAATTGAGCGTCTATGGGTGTTGGAATGGTAAGGGGAGT
                      ____________________________________________________________
consensus             TGATTCATTGCGCGGGTCCTTAAATTGAGCGTCTATGGGTGTTGGAATGGTAAGGGGAGT
 
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JMFF010H13+           GGTGGCGACGCGGAATTCTGAGAAGATATCTCTGTAGAAAGTGAGTTTGGGCTCGAGAGA
                      ____________________________________________________________
consensus             GGTGGCGACGCGGAATTCTGAGAAGATATCTCTGTAGAAAGTGAGTTTGGGCTCGAGAGA
 
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JMFF010H13+           TAGGCTGCTGAAATAGAACAAGCTGAAGAGGAAGAGAAGGAGCAATGCGGTGGTGGAGAG
                      ____________________________________________________________
consensus             TAGGCTGCTGAAATAGAACAAGCTGAAGAGGAAGAGAAGGAGCAATGCGGTGGTGGAGAG
 
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JMFF010H13+           AGTGTAAATGCCCTTCTGCTGAGAGAGAGAGGTGTAAGAAGAAGCTAAGCCATTTGCCAT
                      ____________________________________________________________
consensus             AGTGTAAATGCCCTTCTGCTGAGAGAGAGAGGTGTAAGAAGAAGCTAAGCCATTTGCCAT