| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF009D21 | Sequence | 487 | 003092 (6) | emb|CDP18583.1| | 2e-48 | unnamed protein product [Coffea canephora] | 617 | 005556 (8) | ref|XP_009597827.1| | 5e-77 | PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform |
| JMFF048L08 | Sequence | 463 | 003092 (6) | emb|CDP18583.1| | 2e-44 | unnamed protein product [Coffea canephora] | 294 | 005556 (8) | |||
| JMFF049M05 | Sequence | 475 | 003092 (6) | emb|CDP18583.1| | 5e-45 | unnamed protein product [Coffea canephora] | 401 | 005556 (8) | dbj|BAH20275.1| | 3e-24 | AT1G55490 [Arabidopsis thaliana] |
| JMFS025A09 | Sequence | 602 | 003092 (6) | emb|CDP18583.1| | 2e-90 | unnamed protein product [Coffea canephora] | |||||
| JMSF022E04 | Sequence | 664 | 003092 (6) | emb|CDP18583.1| | 2e-99 | unnamed protein product [Coffea canephora] | 774 | 005556 (8) | ref|XP_009597827.1| | 2e-114 | PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform |
| JMSF051A10 | Sequence | 675 | 003092 (6) | emb|CDP18583.1| | 3e-102 | unnamed protein product [Coffea canephora] | 729 | 005556 (8) | ref|XP_009597827.1| | 9e-102 | PREDICTED: chaperonin 60 subunit beta 2, chloroplastic [Nicotiana tomentosiform |
This contig is upended
. : . : . : . : . : . :
JMSF051A10+ TT
____________________________________________________________
consensus TT
. : . : . : . : . : . :
JMSF051A10+ GACATGTTTTTCAGCTCAGACACTAAAGCTTTTGTGGTCTTCTCAATTCCTCTAGTGATC
JMFS025A09+ AGTGATC
JMSF022E04+ AGCTCAGACACTAAAGCTTTTGTGGTCTTCTCAATTCCTCTAGTGATC
____________________________________________________________
consensus GACATGTTTTTCAGCTCAGACACTAAAGCTTTTGTGGTCTTCTCAATTCCTCTAGTGATC
. : . : . : . : . : . :
JMSF051A10+ AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
JMFS025A09+ AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
JMSF022E04+ AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
____________________________________________________________
consensus AAGACAGGGTTTGCACCAGCTGCAACAACCTTGACACCTTCAGCAATTAGGCCTTGTGCA
. : . : . : . : . : . :
JMSF051A10+ AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
JMFS025A09+ AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
JMSF022E04+ AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
____________________________________________________________
consensus AGAACAACAGATGTTGTTGTCCCATCACCTGCCAAGTCATTGGTTTTGGCTGCAGCTTGT
. : . : . : . : . : . :
JMSF051A10+ CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
JMFS025A09+ CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
JMSF022E04+ CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
JMFF009D21+ GGCCACA
____________________________________________________________
consensus CTCACCAGCTTAGCACCTATGTTCTCCACAGGATCCTCCAGCTCAACCTCTCTGGCCACA
. : . : . : . : . : . :
JMSF051A10+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFS025A09+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMSF022E04+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFF049M05+ TCCATCATTGACAATTTTGGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFF048L08+ CCATCATTGACATTTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
JMFF009D21+ GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
____________________________________________________________
consensus GTAACTCCATCATTGACAATTTTTGGAGCACCATACTTGCTCTCAAGAACAACATTCCTT
. : . : . : . : . : . :
JMSF051A10+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFS025A09+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMSF022E04+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFF049M05+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFF048L08+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
JMFF009D21+ CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
____________________________________________________________
consensus CCCTTGGGACCAAGTGTGACCCCAACTAGATCAGAAAGCTTATTAACACCGATTTGGAGC
. : . : . : . : . : . :
JMSF051A10+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFS025A09+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMSF022E04+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFF049M05+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFF048L08+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
JMFF009D21+ CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
____________________________________________________________
consensus CTCTTAATAGCTGATCCATCCTTATTGAAATACAACTCCTTGGCTGCAGCTGTTATTTGG
. : . : . : . : . : . :
JMSF051A10+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFS025A09+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCTTCCCAAAGGAGCTTGAAGATATA
JMSF022E04+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFF049M05+ CAAGGGCGTGTTTTGGGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFF048L08+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
JMFF009D21+ CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
____________________________________________________________
consensus CAAGGGCGTGTTTTGCGTAGAACAACATTTTTCCTCCTCCCAAAGGAGCTTGAAGATATA
. : . : . : . : . : . :
JMSF051A10+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFS025A09+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMSF022E04+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFF049M05+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFF048L08+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
JMFF009D21+ GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
____________________________________________________________
consensus GAAGCAAGAGATGACAACTTATTTGAAGAAATTGCAAGCCTGTTGTCCTTCATGCAGCTG
. : . : . : . : . : . :
JMSF051A10+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFS025A09+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMSF022E04+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFF049M05+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFF048L08+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
JMFF009D21+ CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
____________________________________________________________
consensus CTAGGAGCAGCCAATGAACCAGCTGAAGACATGCCAGCAAAGGTAGAAGCCATTTGCACC
. : . : . : . : . : . :
JMSF051A10+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFS025A09+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGA
JMSF022E04+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFF049M05+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFF048L08+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
JMFF009D21+ GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
____________________________________________________________
consensus GGAAAGCGGAGGCTGAGTTAGGGTTTATCCGATGAGAAGGATGCTAGACAGTAGAGTCGT
. : . : . : . : . : . :
JMSF051A10+ TGAGGCTCGGAG
JMSF022E04+ TGAGGCTCGGAGAGT
JMFF049M05+ TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATCTGGAGTGCCAA
JMFF048L08+ TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATC
JMFF009D21+ TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATCTGGAGTGCCAA
____________________________________________________________
consensus TGAGGCTCGGAGAGTGAGTAGAGGATACGATTAGGTTTATTATATAATCTGGAGTGCCAA