Contig 003087:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005P13Sequence476003087 (6)ref|XP_009589888.1|3e-33PREDICTED: uncharacterized zinc finger protein At4g06634 [Nicotiana tomentosifo744005502 (6)gb|KJB16120.1|2e-53hypothetical protein B456_002G214700 [Gossypium raimondii]
JMFF008M23Sequence573003087 (6)gb|EYU26504.1|3e-63hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata]735005502 (6)gb|KJB16120.1|1e-40hypothetical protein B456_002G214700 [Gossypium raimondii]
JMFF011H02Sequence476003087 (6)ref|XP_009589888.1|3e-33PREDICTED: uncharacterized zinc finger protein At4g06634 [Nicotiana tomentosifo746005502 (6)gb|KJB16119.1|7e-56hypothetical protein B456_002G214700 [Gossypium raimondii]
JMFF043A01Sequence639003087 (6)gb|EYU26504.1|2e-78hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata]542005502 (6)ref|XP_006387776.1|3e-23hypothetical protein POPTR_0590s00200g [Populus trichocarpa] gb|ERP46690.1| hypo
JMFF043A05Sequence636003087 (6)gb|EYU26504.1|5e-75hypothetical protein MIMGU_mgv1a007778mg [Erythranthe guttata]541005502 (6)ref|XP_006387776.1|9e-24hypothetical protein POPTR_0590s00200g [Populus trichocarpa] gb|ERP46690.1| hypo
JMSF007L18Sequence378003087 (6)ref|XP_006350548.1|2e-25PREDICTED: uncharacterized zinc finger protein At4g06634-like [Solanum tuberosu776005502 (6)gb|KJB16120.1|1e-67hypothetical protein B456_002G214700 [Gossypium raimondii]

Alignment

This contig is upended


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JMFF043A01+                                CAGGTGAAATCCAGCGAGAATGCCTTGCCACAGCCCTCC
JMFF043A05+                                   GTGAAATCCAGCGAGAATGCCTGCCANCAGCCCTCC
                      ____________________________________________________________
consensus                                  CAGGTGAAATCCAGCGAGAATGCCTTGCCACAGCCCTCC
 
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JMFF043A01+           ACTGGACATACAAAAGCCCTCTCCCCTGTATGAATAAGAAAGTGCCGCTTCAGCTTTGAA
JMFF043A05+           ACTGGACATACAAAAGCCCTCTCCCCTGTATGAATAAGAAAGTGCCGCTTCAGCTTTGAA
JMFF008M23+                                      GTATGAATAAGAAAGTGCCGCTTCAGCTTTGAA
                      ____________________________________________________________
consensus             ACTGGACATACAAAAGCCCTCTCCCCTGTATGAATAAGAAAGTGCCGCTTCAGCTTTGAA
 
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JMFF043A01+           CTATCCAAAAATTTCTTTCCACAATTCTCATAGTGACAGATATATTGTCTCTCTCCATGG
JMFF043A05+           CTATCCAAAAATTTCTTTCCACAATTCTCATAGTGACAGATATATTGTCTCTCTCCATGG
JMFF005P13+                                      TCATAGTGACAGATATATTGTCTCTCTCCATGG
JMFF011H02+                                      TCATAGTGACAGATATATTGTCTCTCTCCATGG
JMFF008M23+           CTATCCAAAAATTTCTTTCCACAATTCTCATAGTGACAGATATATTGTCTCTCTCCATGG
                      ____________________________________________________________
consensus             CTATCCAAAAATTTCTTTCCACAATTCTCATAGTGACAGATATATTGTCTCTCTCCATGG
 
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JMFF043A01+           ATGTGAGAATGCTTCCTCAAAGCTCCAGCATCAATAAATGTCTTTCCACAGCCTTCATAA
JMFF043A05+           ATGTGAGAATGCTTCCTCAAAGCTCCAGCATCAATAAATGTCTTTCCACAGCCTTCATAA
JMFF005P13+           ATGTGAGAATGCTTCCTCAAAGCTCCAGCATCAATAAATGTCTTTCCACAGCCTTCATAA
JMFF011H02+           ATGTGAGAATGCTTCCTCAAAGCTCCAGCATCAATAAATGTCTTTCCACAGCCTTCATAA
JMSF007L18+                                                                  CATAA
JMFF008M23+           ATGTGAGAATGCTTCCTCAAAGCTCCAGCATCAATAAATGTCTTTCCACAGCCTTCATAA
                      ____________________________________________________________
consensus             ATGTGAGAATGCTTCCTCAAAGCTCCAGCATCAATAAATGTCTTTCCACAGCCTTCATAA
 
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JMFF043A01+           CTGCAGAGGAAGAGAACTTCAGTAGCTGGCTCTGGCTCAGCTTCTGGAATTTCTGGCTCT
JMFF043A05+           CTGCAGAGGAAGAGAACTTCAGTAGCTGGCTCTGGCTCAGCTTCTGGAATTTCTGGCTCT
JMFF005P13+           CTGCAGAGGA--AAAACTTCAGTAGCTGGCTCTGGCTCAGCTTCTGGAATTTCTGGCTCT
JMFF011H02+           CTGCAGAGGA--AAAACTTCAGTAGCTGGCTCTGGCTCAGCTTCTGGAATTTCTGGCTCT
JMSF007L18+           CTGCAGAGGAAGAGAACTTCAGTAGCTGGCTCTGGCTCAGCTTCTGGAATTTCTGGCTCT
JMFF008M23+           CTGCAGAGGAAGAGAACTTCAGTAGCTGGCTCTGGCTCAGCTTCTGGAATTTCTGGCTCT
                      ____________________________________________________________
consensus             CTGCAGAGGAAGAGAACTTCAGTAGCTGGCTCTGGCTCAGCTTCTGGAATTTCTGGCTCT
 
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JMFF043A01+           ATCGGCTTCTCCTTTAAAGCATTCAATGTGGCCTCATTAACCCATTTTAAAAGCAAGCAC
JMFF043A05+           ATCGGCTTCTCCTTTAAAGCATTCAATGTGGCCTCATTAACCCATTTTAAAAGCAAGCAC
JMFF005P13+           ATCGGCTTCTCCTTTAAAGCATTCAATGTGGCCTCATTAACCCATTTTAAAAGCAAGCAC
JMFF011H02+           ATCGGCTTCTCCTTTAAAGCATTCAATGTGGCCTCATTAACCCATTTTAAAAGCAAGCAC
JMSF007L18+           ATCGGCTTCTCCTTTAAAGCATTCAATGTGGCCTCATTAACCCATTTTAAAAGCAAGCAC
JMFF008M23+           ATCGGCTTCTCCTTTAAAGCATTCAATGTGGCCTCATTAACCCATTTTAAAAGCAAGCAC
                      ____________________________________________________________
consensus             ATCGGCTTCTCCTTTAAAGCATTCAATGTGGCCTCATTAACCCATTTTAAAAGCAAGCAC
 
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JMFF043A01+           TTCCCACCAGTTGCTACAACATCTTGTGGCACCCATTCCTTGAACCATTTGGTGGCGGGA
JMFF043A05+           TTCCCACCAGTTGCTACAACATCTTGTGGCACCCATTCCTTGAACCATTTGGTGGCGGGA
JMFF005P13+           TTCCCACCAGTTGCTACAACATCTTGTGGCACCCATTCCTTGAACCATTTGGTGGCGGGA
JMFF011H02+           TTCCCACCAGTTGCTACAACATCTTGTGGCACCCATTCCTTGAACCATTTGGTGGCGGGA
JMSF007L18+           TTCCCACCAGTTGCTACAACATCTTGTGGCACCCATTCCTTGAACCATTTGGTGGCGGGA
JMFF008M23+           TTCCCACCAGTTGCTACAACATCTTGTGGCACCCATTCCTTGAACCATTTGGTGGCGGGA
                      ____________________________________________________________
consensus             TTCCCACCAGTTGCTACAACATCTTGTGGCACCCATTCCTTGAACCATTTGGTGGCGGGA
 
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JMFF043A01+           GCTCTGGACTTTGCGATGGGGCGCCGGTCGAAAAGGTTGTGAAACGTCTGAGCCTCCATC
JMFF043A05+           GCTCTGGACTTTGCGATGGGGCGCCGGTCGAAAAGGTTGTGAAACGTCTGAGCCTCCATC
JMFF005P13+           GCTCTGGACTTTGCGATGGGGCGCCGGTCGAAAAGGTTGTGAAACGTCTGAGCCTCCATC
JMFF011H02+           GCTCTGGACTTTGCGATGGGGCGCCGGTCGAAAAGGTTGTGAAACGTCTGAGCCTCCATC
JMSF007L18+           GCTCTGGACTTTGCGATGGGGCGCCGGTCGAAAAGGTTGTGAAACGTCTGAGCCTCCATC
JMFF008M23+           GCTCTGGACTTTGCGATGGGGCGCCGGTCGAAAAGGTTGTGAAACGTCTGAGCCTCCATC
                      ____________________________________________________________
consensus             GCTCTGGACTTTGCGATGGGGCGCCGGTCGAAAAGGTTGTGAAACGTCTGAGCCTCCATC
 
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JMFF043A01+           TAATCAGACACCGGAGCCGGTGGCCGATCGATTAACTCTTCTACGCTATATATATCGTTG
JMFF043A05+           TAATCAGACACCGGAGCCGGTGGCCGATCGATTAACTCTTCTACGCTATATATATCGTTG
JMFF005P13+           TAATCAGACACCGGAGCCGGTGGCCGATCGATTAACTCTTCTACGCTATATATATCGTTG
JMFF011H02+           TAATCAGACACCGGAGCCGGTGGCCGATCGATTAACTCTTCTACGCTATATATATCGTTG
JMSF007L18+           TAATCAGACACCGGAGCCGGTGGCCGATCGATTAACTCTTCTACGCTATATATATCGTTG
JMFF008M23+           TAATCAGACACCGGAGCCGGTGGCCGATCGATTAACTCTTCTACGCTATATATATCGTTG
                      ____________________________________________________________
consensus             TAATCAGACACCGGAGCCGGTGGCCGATCGATTAACTCTTCTACGCTATATATATCGTTG
 
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JMFF043A01+           CGAATTAGGGTTAGGAGCTTTAGATTTCGATTTTCAGGATCACGAGGTCGTGTTGTACTG
JMFF043A05+           CGAATTAGGGTTAGGAGCTTTAGATTTCGATTTTCAGGATCACGAGGTCGTGTTGTACTG
JMFF005P13+           CGAATTAGGGTTAGGAGCTTTAGATTTCGATTTTCAGGATCACGAGGTCGTGTTGTACTG
JMFF011H02+           CGAATTAGGGTTAGGAGCTTTAGATTTCGATTTTCAGGATCACGAGGTCGTGTTGTACTG
JMSF007L18+           CGAATTAGGGTTAGGAGCTTTAGATTTCGATTTTCAGGATCACGAGGTCGTGTTGTACTG
JMFF008M23+           CGAATTAGGGTTAGGAGCTTTAGATTTCGATTTTCAGGATCACGAGGTCGTGTTGTACTG
                      ____________________________________________________________
consensus             CGAATTAGGGTTAGGAGCTTTAGATTTCGATTTTCAGGATCACGAGGTCGTGTTGTACTG
 
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JMFF043A01+           GTGAAATTCGGAACTTCGAAGTTTGTGAGTCTGCTCTGCCATTGTAGTTTCTTCCGGACC
JMFF043A05+           GTGAAATTCGGAACTTCGAAGTTTGTGAGTCTGCTCTGCCATTGTAGTTTCTTCCGGACC
JMFF005P13+           GTGAAATTCGGAACT                                             
JMFF011H02+           GTGAAATTCGGAACT                                             
JMSF007L18+           GTGAAATTCGGA                                                
JMFF008M23+           GTGAAATTCGGAACTTCGAAGTTTGTGAGTCTGCTCTGCCATTGTAGTTTCTTCCGGACC
                      ____________________________________________________________
consensus             GTGAAATTCGGAACTTCGAAGTTTGTGAGTCTGCTCTGCCATTGTAGTTTCTTCCGGACC