Contig 003082:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K20Sequence561003082 (3)ref|XP_004250947.1|4e-83PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic797009958 (3)ref|XP_004250947.1|2e-83PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic
JMSF020C21Sequence693003082 (3)ref|XP_004250947.1|5e-121PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic761009958 (3)ref|XP_010313279.1|6e-83PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Solanum lycopersic
JMSF050O09Sequence605003082 (3)ref|XP_004250947.1|2e-102PREDICTED: polyadenylate-binding protein RBP47B' isoform X1 [Solanum lycopersic737009958 (3)ref|XP_010313279.1|3e-83PREDICTED: polyadenylate-binding protein RBP47B' isoform X2 [Solanum lycopersic

Alignment

This contig is upended


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JMSF020C21+                       GTTGCTGCACTTATACGCATTGGCCTAGTTGAGCAATAGGCACCATTC
                      ____________________________________________________________
consensus                         GTTGCTGCACTTATACGCATTGGCCTAGTTGAGCAATAGGCACCATTC
 
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JMSF050O09+                                     TGTCTCATCAGCAAACTTAACAAAGCCATATCCC
JMSF020C21+           ATTTCTGTCATGGCACGGTTTCTTTCTGTCTCATCAGCAAACTTAACAAAGCCATATCCC
                      ____________________________________________________________
consensus             ATTTCTGTCATGGCACGGTTTCTTTCTGTCTCATCAGCAAACTTAACAAAGCCATATCCC
 
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JMSF050O09+           TTAGAGCGTCCAGTATTGGGATCAGTAACAACCTTGGCTCCTCTGACAGATGGATAATGA
JMSF020C21+           TTAGAGCGTCCAGTATTGGGATCAGTAACAACCTTGGCTCCTCTGACAGATGGATAATGA
JMFF007K20+                                                    TCTGACAGATGGATAATGA
                      ____________________________________________________________
consensus             TTAGAGCGTCCAGTATTGGGATCAGTAACAACCTTGGCTCCTCTGACAGATGGATAATGA
 
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JMSF050O09+           GTACGGAATGTCTCTTGCAATAAGTAATCCGTAACATCAGGAGCTAAATCCCCTACAAAG
JMSF020C21+           GTACGGAATGTCTCTTGCAATAAGTAATCCGTAACATCAGGAGCTAAATCCCCTACAAAG
JMFF007K20+           GTACGGAATGTCTCTTGCAATAAGTAATCCGTAACATCAGGAGCTAAATCCCCTACAAAG
                      ____________________________________________________________
consensus             GTACGGAATGTCTCTTGCAATAAGTAATCCGTAACATCAGGAGCTAAATCCCCTACAAAG
 
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JMSF050O09+           ATAGAATGCTCTGGACCAGCATCACGTCGTTCTCCAATCCCAGATGATGCCCAATTTAAC
JMSF020C21+           ATAGAATGCTCTGGACCAGCATCACGTCGTTCTCCAATCCCAGATGATGCCCAATTTAAC
JMFF007K20+           ATAGAATGCTCTGGACCAGCATCACGTCGTTCTCCAATCCCAGATGATGCCCAATTTAAC
                      ____________________________________________________________
consensus             ATAGAATGCTCTGGACCAGCATCACGTCGTTCTCCAATCCCAGATGATGCCCAATTTAAC
 
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JMSF050O09+           CTAAAAGTTAATTCTGTCCCAGGAATTTGTGTTCCATTATAAGACTGCAAAATATGCTCA
JMSF020C21+           CTAAAAGTTAATTCTGTCCCAGGAATTTGTGTTCCATTATAAGACTGCAAAATATGCTCA
JMFF007K20+           CTAAAAGTTAATTCTGTCCCAGGAATTTGTGTTCCATTATAAGACTGCAAAATATGCTCA
                      ____________________________________________________________
consensus             CTAAAAGTTAATTCTGTCCCAGGAATTTGTGTTCCATTATAAGACTGCAAAATATGCTCA
 
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JMSF050O09+           GCTACTGCATGTGAAGTAAACTCCACAAACCCATATCCCTCAGGTTGGCCTGTGATTTTA
JMSF020C21+           GCTACTGCATGTGAAGTAAACTCCACAAACCCATATCCCTCAGGTTGGCCTGTGATTTTA
JMFF007K20+           GCTACTGCATGTGAAGTAAACTCCACAAACCCATATCCCTCAGGTTGGCCTGTGATTTTA
                      ____________________________________________________________
consensus             GCTACTGCATGTGAAGTAAACTCCACAAACCCATATCCCTCAGGTTGGCCTGTGATTTTA
 
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JMSF050O09+           TTTCGAATCACTTTTATTGAAAGTACCTCGCCGCTGTGAGCGAACCAGCTCTGGAGATAA
JMSF020C21+           TTTCGAATCACTTTTATTGAAAGTACCTCGCCGCTGTGAGCGAACCAGCTCTGGAGATAA
JMFF007K20+           TTTCGAATCACTTTTATTGAAAGTACCTCGCCGCTGTGAGCGAACCAGCTCTGGAGATAA
                      ____________________________________________________________
consensus             TTTCGAATCACTTTTATTGAAAGTACCTCGCCGCTGTGAGCGAACCAGCTCTGGAGATAA
 
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JMSF050O09+           GGCTCTTCGGCCCAATAGGGCAAGTCCCCAATCCAAAGGGTTCGGACTTCCTCGAGGGTG
JMSF020C21+           GGCTCTTCGGCCCAATAGGGCAAGTCCCCAATCCAAAGGGTTCGGACTTCCTCGAGGGTG
JMFF007K20+           GGCTCTTCGGCCCAATAGGGCAAGTCCCCAATCCAAAGGGTTCGGACTTCCTCGAGGGTG
                      ____________________________________________________________
consensus             GGCTCTTCGGCCCAATAGGGCAAGTCCCCAATCCAAAGGGTTCGGACTTCCTCGAGGGTG
 
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JMSF050O09+           GTTGGCTGGTGGTATGGCTGCGACGCCGCCATCGGCTGCGGCCCACTCATTCTTTCTTCT
JMSF020C21+           GTTGGCTGGTGGTATGGCTGCGACGCCGCCATCGGCTGCGGCCCACTCATTCTTTCTTCT
JMFF007K20+           GTTGGCTGGTGGTATGGCTGCGACGCCGCCATCGGCTGCGGCCCACTCATTCTTTCTTCT
                      ____________________________________________________________
consensus             GTTGGCTGGTGGTATGGCTGCGACGCCGCCATCGGCTGCGGCCCACTCATTCTTTCTTCT
 
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JMSF050O09+           TTCTCCTTTTCTCAGTCCTGCTGCTACAAATTTTACTGCCGTGTTGCACAATCGGAGTAA
JMSF020C21+           TTCTCCTTTTCTCAGTCCTGCTGCTACAAATTTTACTGCCGTGTTGCACAATCGGAGTAA
JMFF007K20+           TTCTCCTTTTCTCAGTCCTGCTGCTACAAATTTTACTGCCGTGTTGCACAATCGGAGTAA
                      ____________________________________________________________
consensus             TTCTCCTTTTCTCAGTCCTGCTGCTACAAATTTTACTGCCGTGTTGCACAATCGGAGTAA
 
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JMSF050O09+           TGGAATTCTCTCTTCGACTCTTCGTTTTAT                              
JMSF020C21+           TGGAATTCTCTCTTCGACTCTTCGTTTTATGTTGTTTGTATTTC                
JMFF007K20+           TGGAATTCTCTCTTCGACTCTTCGTTTTATGTTGTTTGTATTTCATGAAAATTTTACCAT
                      ____________________________________________________________
consensus             TGGAATTCTCTCTTCGACTCTTCGTTTTATGTTGTTTGTATTTCATGAAAATTTTACCAT