| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF003O01 | Sequence | 522 | 003078 (6) | ref|XP_009769444.1| | 3e-11 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Nicotiana sylvestris] | 785 | 001206 (5) | ref|XP_011071940.1| | 2e-63 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20 isoform X2 [Sesamum indicum] |
| JMFF006L18 | Sequence | 561 | 003078 (6) | ref|XP_009769444.1| | 5e-11 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Nicotiana sylvestris] | 781 | 001206 (5) | ref|XP_004236255.1| | 3e-72 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Solanum lycopersicum] |
| JMFF045I24 | Sequence | 618 | 003078 (6) | gb|KJB40104.1| | 9e-13 | hypothetical protein B456_007G047000 [Gossypium raimondii] gb|KJB40105.1| hypoth | 653 | 001206 (5) | emb|CBI14966.3| | 9e-19 | unnamed protein product [Vitis vinifera] |
| JMFS117C12 | Sequence | 481 | 003078 (6) | ref|XP_009769444.1| | 4e-11 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Nicotiana sylvestris] | |||||
| JMSF015M06 | Sequence | 485 | 003078 (6) | ref|XP_009769444.1| | 2e-10 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Nicotiana sylvestris] | 798 | 001206 (5) | ref|XP_004236255.1| | 1e-66 | PREDICTED: DEAD-box ATP-dependent RNA helicase 20 [Solanum lycopersicum] |
| JMSF019C11 | Sequence | 544 | 003078 (6) | emb|CDP12744.1| | 3e-28 | unnamed protein product [Coffea canephora] | 792 | 001206 (5) | emb|CBI14966.3| | 3e-17 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
JMSF019C11+ AATACGCAGGAAAGTTTGCCTC
____________________________________________________________
consensus AATACGCAGGAAAGTTTGCCTC
. : . : . : . : . : . :
JMSF019C11+ ATGGAACATTCGAATTGGCTTTGGGATATCCGTGCCCTCAACTGTAACCTCACGCCTTGC
____________________________________________________________
consensus ATGGAACATTCGAATTGGCTTTGGGATATCCGTGCCCTCAACTGTAACCTCACGCCTTGC
. : . : . : . : . : . :
JMSF019C11+ ACGATATAGTGCAACCTCGTGCTCAGTCATTGCCATCACTGATGGACTCTCAGAGTAGAA
JMFF045I24+ CGATATAGTGCAACCTCGTGCTCAGTCATTGCCATCACTGATGGACTCTCAGAGTAGAA
____________________________________________________________
consensus ACGATATAGTGCAACCTCGTGCTCAGTCATTGCCATCACTGATGGACTCTCAGAGTAGAA
. : . : . : . : . : . :
JMSF019C11+ GTTCTTCTCAAAGCGAACCAAGTTTCCAAAATCTTGTTTTGGAAGGGAAATGTTATCCAA
JMFF045I24+ GTTCTTCTCAAAGCGAACCAAGTTTCCAAAATCTTGTTTTGGAAGGGAAATGTTATCCAA
JMFF003O01+ TGGAAGGGAAATGTTATCCAA
JMFF006L18+ TGGAAGGGAAATGTTATCCAA
____________________________________________________________
consensus GTTCTTCTCAAAGCGAACCAAGTTTCCAAAATCTTGTTTTGGAAGGGAAATGTTATCCAA
. : . : . : . : . : . :
JMSF019C11+ ATCATCTCGCCCCCTGCCATGTGCCCCATGCCTACCTGTGCCACCACTTCGCCCTCCATC
JMFF045I24+ ATCATCTCGCCCCCTGCCATGTGCCCCATGCCTACCTGTGCCACCACTTCGCCCTCCATC
JMSF015M06+ GCCATGTGCCCCATGCCTACCTGTGCCACCACTTCGCCCTCCATC
JMFF003O01+ ATCATCTCGCCCCCTGCCATGTGCCCCATGCCTACCTGTGCCACCACTTCGCCCTCCATC
JMFS117C12+ CACCACTTCGCCCTCCATC
JMFF006L18+ ATCATCTCGCCCCCTGCCATGTGCCCCATGCCTACCTGTGCCACCACTTCGCCCTCCATC
____________________________________________________________
consensus ATCATCTCGCCCCCTGCCATGTGCCCCATGCCTACCTGTGCCACCACTTCGCCCTCCATC
. : . : . : . : . : . :
JMSF019C11+ ATATCCAGATCTCCCACCTCCACGTCCACCGTGTCCTCTATCAAACCCCCT-CCCACTAG
JMFF045I24+ ATATCCAGATCTCCCACCTCCACGTCCACCGTGTCCTCTATCAAACCCCCT-CCCACTAG
JMSF015M06+ ATATCCAGATCTCCCACCTCCACGTCCACCGTGTCCTCTATCAAACCCCCT-CCCACTAG
JMFF003O01+ ATATCCAGATCTCCCACCTCCACGTCCACCGTGTCCTCTATCAAACCCCCT-CCCACTAG
JMFS117C12+ ATATCCAGATCTCCCACCTCCACGTCCACCGTGTCCTCTATCAAACCCCCT-CCCACTAG
JMFF006L18+ ATATCCAGATCTCCCACCTCCACGTCCACCGTGTCCTCTATCAAACCCCCTCCCCACTAG
____________________________________________________________
consensus ATATCCAGATCTCCCACCTCCACGTCCACCGTGTCCTCTATCAAACCCCCT-CCCACTAG
. : . : . : . : . : . :
JMSF019C11+ CCCTACCCCCTCGGCTCAAATCAAATCCCCGCCCAGCACCACCTCGATCCTCATTCCCAC
JMFF045I24+ CCCTACCCCCTCGGCTCAAATCAAATCCCCGCCCAGCACCACCTCGATCCTCATTCCCAC
JMSF015M06+ CCCTACCCCCTCGGCTCAAATCAAATCCCCGCCCAGCACCACCTCGATCCTCATTCCCAC
JMFF003O01+ CCCTACCCCCTCGGCTCAAATCAAATCCCCGCCCAGCACCACCTCGATCCTCATTCCCAC
JMFS117C12+ CCCTACCCCCTCGGCTCAAATCAAATCCCCGCCCAGCACCACCTCGATCCTCATTCCCAC
JMFF006L18+ CCCTACCCCCTCGGCTCAAATCAAATCCCCGCCCAGCACCACCTCGATCCTCATCCCCAC
____________________________________________________________
consensus CCCTACCCCCTCGGCTCAAATCAAATCCCCGCCCAGCACCACCTCGATCCTCATTCCCAC
. : . : . : . : . : . :
JMSF019C11+ CAGTCTGGAAAGAAGGGAACCCTGAATAACGTGGCGGAGCCACCACAGGACCTCCATAAG
JMFF045I24+ CAGTCTGGAAAGAAGGGAACCCTGAATAACGTGGCGGAGCCACCACAGGACCTCCATAAG
JMSF015M06+ CAGTCTGGAAAGAAGGGAACCCTGAATAACGTGGCGGAGCCACCACAGGACCTCCATAAG
JMFF003O01+ CAGTCTGGAAAGAAGGGAACCCTGAATAACGTGGCGGAGCCACCACAGGACCTCCATAAG
JMFS117C12+ CAGTCTGGAAAGAAGGGAACCCTGAATAACGTGGCGGAGCCACCACAGGACCTCCATAAG
JMFF006L18+ CAGTCTGGAAAGAAGGGAACCCTGAATAACGTGGCGGAGCCACCACAGGACCTCCATAAG
____________________________________________________________
consensus CAGTCTGGAAAGAAGGGAACCCTGAATAACGTGGCGGAGCCACCACAGGACCTCCATAAG
. : . : . : . : . : . :
JMSF019C11+ GAGTTGGGGCACCACGGCTATTACTTAAGGCAGCTCCACCGGCTATATGCGGTGGCCCTA
JMFF045I24+ GAGTTGGGGCACCACGGCTATTACTTAAGGCAGCTCCACCGGCTATATGCGGTGGCCCTA
JMSF015M06+ GAGTTGGGGCACCACGGCTATTACTTAAGGCAGCTCCACCGGCTATATGCGGTGGCCCTA
JMFF003O01+ GAGTTGGGGCACCACGGCTATTACTTAAGGCAGCTCCACCGGCTATATGCGGTGGCCCTA
JMFS117C12+ GAGTTGGGGCACCACGGCTATTACTTAAGGCAGCTCCACCGGCTATATGCGGTGGCCCTA
JMFF006L18+ GAGTTGGGGCACCACGGCTATTACTTAAGGCAGCTCCACCGGCTATATGCGGTGGCCCTA
____________________________________________________________
consensus GAGTTGGGGCACCACGGCTATTACTTAAGGCAGCTCCACCGGCTATATGCGGTGGCCCTA
. : . : . : . : . : . :
JMSF019C11+ TCAGATCACTTCTGCGTTGACGATAGGAATTGGAGTCAGCGT
JMFF045I24+ TCAGATCACTTCTGCGTTGACGATAGGAATTGGAGTCAGCGTATCTGGAATCGTAATTAG
JMSF015M06+ TCAGATCACTTCTGCGTTGACGATAGGGATTGGAGTCAGCGTATCTGGAATCGTAATTAG
JMFF003O01+ TCAGATCACTTCTGCGTTGACGATAGGAATTGGAGTCAGCGTATCTGGAATCGTAATTAG
JMFS117C12+ TCAGATCACTTCTGCGTTGACGATAGGAATTGGAGTCAGCGTATCTGGAATCGTAATTAG
JMFF006L18+ TCAGATCACTTCTGCGTTGACGATAGGAATTGGAGTCAGCGTATCTGGAATCGTAATTAG
____________________________________________________________
consensus TCAGATCACTTCTGCGTTGACGATAGGAATTGGAGTCAGCGTATCTGGAATCGTAATTAG
. : . : . : . : . : . :
JMFF045I24+ GGTTGTACATTGTAGTGGCAACCTAGCAGGGTAGATGGATTGGAGTTAGGGTTTCCAAAT
JMSF015M06+ GGTTGTACATTGTAGTGGCAACCTAGCAGGGTAGATGGATTGGAGTTAGGGTTTCCAAAT
JMFF003O01+ GGTTGTACATTGTAGTGGCAACCTAGCAGGGTAGATGGATTGGAGTTAGGGTTTCCAAAT
JMFS117C12+ GGTTGTACATTGTAGTGGCAACCTAGCAGGGTAGATGGATTGGAGTTAGGGTTTCCAAAT
JMFF006L18+ GGTTGTACATTGTAGTGGCAACCTAGCAGGGTAGATGGATTGGAGTTAGGGTTTCCAAAT
____________________________________________________________
consensus GGTTGTACATTGTAGTGGCAACCTAGCAGGGTAGATGGATTGGAGTTAGGGTTTCCAAAT
. : . : . : . : . : . :
JMFF045I24+ TGTAGACACGAGAACGATTTTCCCTCCTTAGAGTCTCCTCGGCTTGCTCTATTGAACTCG
JMSF015M06+ TGTAGACACGAGAACGATTTTCCCTCCTTAGAGTCTCCTCGGCTTGCTCTATTGAACTCG
JMFF003O01+ TGTAGACACGAGAACGATTTTCCCTCCTTAGAGTCTCCTCGGCTTGCTCTATTGAACTCG
JMFS117C12+ TGTAGACACGAGAACGATTTTCCCTCCTTAGAGTCTCCTCGGCTTGCTCTATTGAACTCG
JMFF006L18+ TGTAGACACGAGAACGATTTTCCCTCCTTAGAGTCTCCTCGGCTTGCTCTATTGAACTCG
____________________________________________________________
consensus TGTAGACACGAGAACGATTTTCCCTCCTTAGAGTCTCCTCGGCTTGCTCTATTGAACTCG
. : . : . : . : . : . :
JMFF045I24+ TCAATGTAGATTGTCACGAT
JMSF015M06+ TCAATGTAGATTGTCACGA
JMFF003O01+ TCAATGTAGATTGTCACGAT
JMFS117C12+ TCAATGTAGATTGTCACGATTTTTAGATTACGTATTCGTTTCT
JMFF006L18+ TCAATGTAGATTGTCACGATTTTTAGATTACGTATTCGTTTCTTTCTATTTATAGAAAAT
____________________________________________________________
consensus TCAATGTAGATTGTCACGATTTTTAGATTACGTATTCGTTTCTTTCTATTTATAGAAAAT