| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF002H13 | Sequence | 491 | 003071 (8) | ref|XP_009599355.1| | 9e-50 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 674 | 005404 (11) | gb|AAL16927.1|AF420477_1 | 3e-60 | 3-hydroxy-3-methylglutaryl CoA reductase, partial [Solanum lycopersicum] |
| JMFF005J16 | Sequence | 471 | 003071 (8) | ref|XP_009599355.1| | 1e-40 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 483 | 005404 (11) | gb|AAY22199.1| | 7e-12 | HMG CoA reductase, partial [Datura inoxia] |
| JMFF011F20 | Sequence | 428 | 003071 (8) | ref|XP_009599355.1| | 5e-40 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 675 | 005404 (11) | gb|AAL16927.1|AF420477_1 | 3e-60 | 3-hydroxy-3-methylglutaryl CoA reductase, partial [Solanum lycopersicum] |
| JMFF022F12 | Sequence | 427 | 003071 (8) | ref|XP_009599355.1| | 5e-40 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 765 | 005404 (11) | ref|XP_004170310.1| | 4e-83 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum |
| JMFF024A20 | Sequence | 421 | 003071 (8) | ref|XP_009599355.1| | 8e-40 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 742 | 005404 (11) | ref|XP_004170310.1| | 3e-76 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum |
| JMFF038A22 | Sequence | 435 | 003071 (8) | ref|XP_009599355.1| | 1e-40 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 685 | 005404 (11) | gb|AAL16927.1|AF420477_1 | 6e-61 | 3-hydroxy-3-methylglutaryl CoA reductase, partial [Solanum lycopersicum] |
| JMSF034M17 | Sequence | 673 | 003071 (8) | ref|XP_009599355.1| | 6e-45 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 698 | 005404 (11) | ref|XP_004170310.1| | 2e-69 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum |
| JMSF043J23 | Sequence | 710 | 003071 (8) | ref|XP_009599355.1| | 2e-59 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase 1 [Nicotiana tomento | 734 | 005404 (11) | ref|XP_004170310.1| | 1e-79 | PREDICTED: 3-hydroxy-3-methylglutaryl-coenzyme A reductase-like, partial [Cucum |
This contig is upended
. : . : . : . : . : . :
JMSF034M17+ ACGGAGCTGATAATCTC
JMSF043J23+ CGATTCCAACAAATAGGACGGAGTTTTCCCCGCCACAACGGAGNTGATAATCTC
____________________________________________________________
consensus CGATTCCAACAAATAGGACGGAGTTTTCCCCGCCACAACGGAGCTGATAATCTC
. : . : . : . : . : . :
JMSF034M17+ CTCGTCCTCNTCAGACCCGTCCGGTGCAATTAAGAGAGCTGGTTTTTCAGCCACGCCGTT
JMSF043J23+ CTCGTCCTCCTCAGACCCGTCCGGTGCAATTAAGAGAGCTGGTTTCTCAGCCACGCCGTT
____________________________________________________________
consensus CTCGTCCTCCTCAGACCCGTCCGGTGCAATTAAGAGAGCTGGTTTTTCAGCCACGCCGTT
. : . : . : . : . : . :
JMSF034M17+ GGAGATCTTCGCAGGTTGCTCAGGAACCANTGAGGCAATTCGTCGAACAGGTGGTGTGGG
JMSF043J23+ GGAGATCTTCGCAGGTTGCTCAGGAACCACTGAGGCAATTCGTCGAACAGGTGGTGTGGG
____________________________________________________________
consensus GGAGATCTTCGCAGGTTGCTCAGGAACCACTGAGGCAATTCGTCGAACAGGTGGTGTGGG
. : . : . : . : . : . :
JMSF034M17+ TGGGGGAATAGCGCAGCCCAGAGTAGTTGCCGCCGCCGCAGCCGAACAAGCCCCACGCCG
JMFF002H13+ GAACAAGCCCCACGCCG
JMSF043J23+ TGGGGGAATAGCGCAGCCCAGAGTAGTTGCCGCCGCCGCAGCCGAACAAGCCCCACGCCG
____________________________________________________________
consensus TGGGGGAATAGCGCAGCCCAGAGTAGTTGCCGCCGCCGCAGCCGAACAAGCCCCACGCCG
. : . : . : . : . : . :
JMSF034M17+ GCTATCCTCTTCCAACAAATACTGCTCATTGCTCTCATCCTCCCCCATCCCACCCCTCCT
JMFF002H13+ GCTATCCTCTTCCAACAAATACTGCTCATTGCTNTCATCCT-CCCCATCCCACCCCTCCT
JMFF022F12+ CCCACCCCTCCT
JMFF011F20+ TCCCACCCCTCCT
JMSF043J23+ GCTATCCTCTTCCAACAAATACTGCTCATTGCTCTCATCCT-CCCCATCCCACCCCTCCT
JMFF038A22+ CCCATCCCACCCCTCNT
JMFF024A20+ T
JMFF005J16+ TTCCAACAAATACTGCTCATTGCTNTCATCCTCCCCCATCCCACCCCTCCT
____________________________________________________________
consensus GCTATCCTCTTCCAACAAATACTGCTCATTGCTCTCATCCTCCCCCATCCCACCCCTCCT
. : . : . : . : . : . :
JMSF034M17+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF002H13+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF022F12+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF011F20+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMSF043J23+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF038A22+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF024A20+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
JMFF005J16+ GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
____________________________________________________________
consensus GATTCGCCCTGTACAGAAAAGACTGCACGAACCCGATCCCAAAGAACCCCAGCAGGTAAA
. : . : . : . : . : . :
JMSF034M17+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF002H13+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF022F12+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAATGTCACCACATGGAGAG
JMFF011F20+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAATGTCACCACATGGAGAG
JMSF043J23+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF038A22+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF024A20+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
JMFF005J16+ TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
____________________________________________________________
consensus TCACCGAGGCGATCAACGACGCCAACGCAGCCAGCTCCGACAACGTCACCACATGGAGAG
. : . : . : . : . : . :
JMSF034M17+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF002H13+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGN
JMFF022F12+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF011F20+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMSF043J23+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF038A22+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF024A20+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
JMFF005J16+ GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
____________________________________________________________
consensus GCGTAGAGTTCCGGATCTTCTCCCTCCACCTCACCAGCAGAAAATACATCACCGTAAAGA
. : . : . : . : . : . :
JMSF034M17+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF002H13+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF022F12+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF011F20+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMSF043J23+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF038A22+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF024A20+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
JMFF005J16+ ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
____________________________________________________________
consensus ACATGGTGAAAAACAACCCATTTGTCAAATACAACGGCAGGGGAAGGGCATCCGACGCCT
. : . : . : . : . : . :
JMSF034M17+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF002H13+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF022F12+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF011F20+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMSF043J23+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF038A22+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF024A20+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
JMFF005J16+ TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
____________________________________________________________
consensus TAGGCGAGGACACTAGAAGATATTGCTGTTTATGAGCCTTAATAGTCTCACACGCCGCCG
. : . : . : . : . : . :
JMSF034M17+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF002H13+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF022F12+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF011F20+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMSF043J23+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF038A22+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF024A20+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
JMFF005J16+ CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
____________________________________________________________
consensus CAGAGCCCTTATTAGGCCGGCAAAGCTGCTTGCTCAGACGCCGGCGAACGTCCATTCTGA
. : . : . : . : . : . :
JMSF034M17+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF002H13+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF022F12+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF011F20+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMSF043J23+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF038A22+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF024A20+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTAT
JMFF005J16+ GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTATGAGAG
____________________________________________________________
consensus GTGGAGAAAAGCGTGGCGGTTAGATGCCGCCGTTAGAATCTGAATTTGGTTTTATGAGAG