Contig 003065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004L09Sequence470003065 (3)ref|XP_006360179.1|3e-38PREDICTED: secologanin synthase-like [Solanum tuberosum]757013608 (3)ref|XP_006348902.1|2e-107PREDICTED: 11-oxo-beta-amyrin 30-oxidase-like isoform X2 [Solanum tuberosum]
JMSF027D14Sequence644003065 (3)ref|XP_006348303.1|6e-72PREDICTED: secologanin synthase-like [Solanum tuberosum]814013608 (3)ref|XP_006348902.1|3e-114PREDICTED: 11-oxo-beta-amyrin 30-oxidase-like isoform X2 [Solanum tuberosum]
JMSF048H09Sequence680003065 (3)ref|XP_006360179.1|1e-71PREDICTED: secologanin synthase-like [Solanum tuberosum]744013608 (3)ref|XP_006348902.1|9e-109PREDICTED: 11-oxo-beta-amyrin 30-oxidase-like isoform X2 [Solanum tuberosum]

Alignment

This contig is upended


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JMSF048H09+                                 GGTCAGGCCACACATCCACCTCACAAGATGATGATGAT
JMSF027D14+                                                              GATGATGAT
                      ____________________________________________________________
consensus                                   GGTCAGGCCACACATCCACCTCACAAGATGATGATGAT
 
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JMSF048H09+           CCTTTTCCATACACAATCCCCTCCCATTTGCTTAGCATTTCAGAGCAGCTTAGCAAGAAC
JMSF027D14+           CCTTTTCCATACACAATCCCCTCCCATTTGCTTAGCATTTCAGAGCAGCTTAGCAAGAAC
                      ____________________________________________________________
consensus             CCTTTTCCATACACAATCCCCTCCCATTTGCTTAGCATTTCAGAGCAGCTTAGCAAGAAC
 
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JMSF048H09+           GCAGGTTGCATAAGCTTTAGCTTCTCTGAATAGAAGGCAGGATTGATTATTCTTCTGTGT
JMSF027D14+           GCAGGTTGCATAAGCTTTAGCTTCTCTGAATAGAAGGCAGGATTGATTATTCTTCTGTGT
                      ____________________________________________________________
consensus             GCAGGTTGCATAAGCTTTAGCTTCTCTGAATAGAAGGCAGGATTGATTATTCTTCTGTGT
 
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JMSF048H09+           TTTGCCCACTGCTCTTTCTCATAGCTGGCAAGTCCCCGTACCAACTTCTTCCCCAGTGGA
JMSF027D14+           TTTGCCCACTGCTCTTTCTCATAGCTGGCAAGTCCCCGTACCAACTTCTTCCCCAGTGGA
                      ____________________________________________________________
consensus             TTTGCCCACTGCTCTTTCTCATAGCTGGCAAGTCCCCGTACCAACTTCTTCCCCAGTGGA
 
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JMSF048H09+           TTCATCTTAGGCTTTTGAAACAGATCATATTTGTTGAAAACCTCCTTGATTAGCTCAGGA
JMSF027D14+           TTCATCTTAGGCTTTTGAAACAGATCATATTTGTTGAAAACCTCCTTGATTAGCTCAGGA
JMFF004L09+                     GCTTTTGAAACAGATCATATTTGTTGAAAACCTCCTTGATTAGCTCAGGA
                      ____________________________________________________________
consensus             TTCATCTTAGGCTTTTGAAACAGATCATATTTGTTGAAAACCTCCTTGATTAGCTCAGGA
 
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JMSF048H09+           TCCCTGAGGAACACCGTAGGAATTGGACCCATCCATACATAACAGTTTTTTCCATATTTG
JMSF027D14+           TCCCTGAGGAACACCGTAGGAATTGGACCCATCCATACATAACAGTTTTTTCCATATTTG
JMFF004L09+           TCCCTGAGGAACACCGTAGGAATTGGACCCATCCATACATAACAGTTTTTTCCATATTTG
                      ____________________________________________________________
consensus             TCCCTGAGGAACACCGTAGGAATTGGACCCATCCATACATAACAGTTTTTTCCATATTTG
 
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JMSF048H09+           TCGGTGAGGTGAACAAAATACGGCATGATTCTCGAGGCAACGTTATCCGACAGAGTCATG
JMSF027D14+           TCGGTGAGGTGAACAAAATACGGCATGATTCTCGAGGCAACGTTATCCGACAGAGTCATG
JMFF004L09+           TCGGTGAGGTGAACAAAATACGGCATGATTCTCGAGGCAACGTTATCCGACAGAGTCATG
                      ____________________________________________________________
consensus             TCGGTGAGGTGAACAAAATACGGCATGATTCTCGAGGCAACGTTATCCGACAGAGTCATG
 
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JMSF048H09+           GGCTTGGAAAGGGCGTCAGTCGTCATCTTTGCGATGTCTTTCATGTCGCCGGAGAGGAAT
JMSF027D14+           GGCTTGGAAAGGGCGTCAGTCGTCATCTTTGCGATGTCTTTCATGTCGCCGGAGAGGAAT
JMFF004L09+           GGCTTGGAAAGGGCGTCAGTCGTCATCTTTGCGATGTCTTTCATGTCGCCGGAGAGGAAT
                      ____________________________________________________________
consensus             GGCTTGGAAAGGGCGTCAGTCGTCATCTTTGCGATGTCTTTCATGTCGCCGGAGAGGAAT
 
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JMSF048H09+           CTGTAGGGGTTCCCTTTGAGGCCTTGCTGTTTAAGCCACTTCTCCAGCTTCTTCGGCTTA
JMSF027D14+           CTGTAGGGGTTCCCTTTGAGGCCTTGCTGTTTAAGCCACTTCTCCAGCTTCTTCGGCTTA
JMFF004L09+           CTGTAGGGGTTCCCTTTGAGGCCTTGCTGTTTAAGCCACTTCTCCAGCTTCTCCGGCTTA
                      ____________________________________________________________
consensus             CTGTAGGGGTTCCCTTTGAGGCCTTGCTGTTTAAGCCACTTCTCCAGCTTCTTCGGCTTA
 
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JMSF048H09+           AACCACACCCAACCCAACACTCCCCATGCGTACGCCAACAAACCCGCTGAAAAGCACACT
JMSF027D14+           AACCACACCCAACCCAACACTCCCCATGCGTACGCCAACAAACCCGCTGAAAAGCACACT
JMFF004L09+           AACCACACCCAACCCAACACTCCCCATGCGTACGCCAACAAACCCGCTGAAAAGCACACT
                      ____________________________________________________________
consensus             AACCACACCCAACCCAACACTCCCCATGCGTACGCCAACAAACCCGCTGAAAAGCACACT
 
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JMSF048H09+           CCCAGTAGGATGTATATCACCTCCATCT                                
JMSF027D14+           CCCAGTAGGATGTATATCACCTCCATCTCCGGCGAGGCAATCGGAAATGTGGGCGTTCTT
JMFF004L09+           CCCAGTAGGATGTATATCACCTCCATCTCCGGCGAGGCAATCGGAAATGTGGGCGTTCTT
                      ____________________________________________________________
consensus             CCCAGTAGGATGTATATCACCTCCATCTCCGGCGAGGCAATCGGAAATGTGGGCGTTCTT
 
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JMSF027D14+           GAT                                                         
JMFF004L09+           GATTTCACGGCGGGTGTGGGTGTTATGATTCTATATATCAACACTGGTGTACTGAAACGT
                      ____________________________________________________________
consensus             GATTTCACGGCGGGTGTGGGTGTTATGATTCTATATATCAACACTGGTGTACTGAAACGT