Contig 003064:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004F22Sequence417003064 (2)ref|XP_009590179.1|3e-29PREDICTED: protein trichome birefringence-like 41 [Nicotiana tomentosiformis]785012224 (3)ref|XP_009804652.1|8e-127PREDICTED: protein trichome birefringence-like 41 isoform X2 [Nicotiana sylvest
JMFF004K16Sequence604003064 (2)ref|XP_009804651.1|1e-70PREDICTED: protein trichome birefringence-like 41 isoform X1 [Nicotiana sylvest762012224 (3)ref|XP_009804652.1|3e-108PREDICTED: protein trichome birefringence-like 41 isoform X2 [Nicotiana sylvest

Alignment

This contig is upended


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JMFF004K16+                                                                   CAAA
                      ____________________________________________________________
consensus                                                                     CAAA
 
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JMFF004K16+           TACACACTGCGGTCCAGCATTACTTTCACATCATAGTCCGTGAAGGTGAAAATGGAGACG
                      ____________________________________________________________
consensus             TACACACTGCGGTCCAGCATTACTTTCACATCATAGTCCGTGAAGGTGAAAATGGAGACG
 
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JMFF004K16+           TCACCAACCCTGGTTTGATTGTAATTGGTGGCAGGCGTTGAAGTGTAGAGAAGGCAGGTG
                      ____________________________________________________________
consensus             TCACCAACCCTGGTTTGATTGTAATTGGTGGCAGGCGTTGAAGTGTAGAGAAGGCAGGTG
 
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JMFF004K16+           AGTGACTGCCATTGGTTTCGGCTCAACGAATCGCCCACAAACATTATGCTTTTCCCTTTC
                      ____________________________________________________________
consensus             AGTGACTGCCATTGGTTTCGGCTCAACGAATCGCCCACAAACATTATGCTTTTCCCTTTC
 
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JMFF004F22+                  GCAGGAAGGCCCGCCCATCAAATCTGGTTAGAATGCAGCCAAGGGGTTGCCAT
JMFF004K16+           AATTTCTGCAGGAAGGCCCGCCCATCAAATCTGGTTAGAATGCAGCCAAGGGGTTGCCAT
                      ____________________________________________________________
consensus             AATTTCTGCAGGAAGGCCCGCCCATCAAATCTGGTTAGAATGCAGCCAAGGGGTTGCCAT
 
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JMFF004F22+           CTATAGTGAAGATAAGAGCGGTCAGGGCGACCATTTCTGAGGCAGTTGAATTCATGTTCT
JMFF004K16+           CTATAGTGAAGATAAGAGCGGTCAGGGCGACCATTTCTGAGGCAGTTGAATTCATGTTCT
                      ____________________________________________________________
consensus             CTATAGTGAAGATAAGAGCGGTCAGGGCGACCATTTCTGAGGCAGTTGAATTCATGTTCT
 
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JMFF004F22+           ATGAAGGGACACATGGAAGAGTCGTAAAGAGGGTAAGTTTCATCTTCAACCCAACTCCCT
JMFF004K16+           ATGAAGGGACACATGGAAGAGTCGTAAAGAGGGTAAGTTTCATCTTCAACCCAACTCCCT
                      ____________________________________________________________
consensus             ATGAAGGGACACATGGAAGAGTCGTAAAGAGGGTAAGTTTCATCTTCAACCCAACTCCCT
 
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JMFF004F22+           TCAAAATAATTGCAGAAGGGCTGCTGCTGCTGGACTCCATTTGCATGTGCTTTGTGAAGA
JMFF004K16+           TCAAAATAATTGCAGAAGGGCTGCTGCTGCTGGACTCCATTTGCATGTGCTTTGTGAAGA
                      ____________________________________________________________
consensus             TCAAAATAATTGCAGAAGGGCTGCTGCTGCTGGACTCCATTTGCATGTGCTTTGTGAAGA
 
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JMFF004F22+           AGAAGAATGGTGAGCAGTAGTATCAGCACCACAGAGAAACTACTGCAGCCTATACATACA
JMFF004K16+           AGAAGAATGGTGAGCAGTAGTATCAGCACCACAGAGAAACTACTGCAGCCTATACATACA
                      ____________________________________________________________
consensus             AGAAGAATGGTGAGCAGTAGTATCAGCACCACAGAGAAACTACTGCAGCCTATACATACA
 
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JMFF004F22+           GCCATCTTCCTAGAGATGGAAGAGTAGTGGAGACAACAAGTTTTAGAGAGAGAAAGAGGA
JMFF004K16+           GCCATCTTCCTAGAGATGGAAGAGTAGTGGAGACAACAAGTTTTAGAGAGAGAAAGAGGA
                      ____________________________________________________________
consensus             GCCATCTTCCTAGAGATGGAAGAGTAGTGGAGACAACAAGTTTTAGAGAGAGAAAGAGGA
 
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JMFF004F22+           AGGTTGGTGGTGGTGGAGCTAGTACACCCCTCTCTCTCTCTGCTAGCTCTTCTTCTACTT
JMFF004K16+           AGGTTGGTGGTGGTGGAGCTAGTACACCCCTCTCTCTCTCTGCTAGCTCTTCTTCTACTT
                      ____________________________________________________________
consensus             AGGTTGGTGGTGGTGGAGCTAGTACACCCCTCTCTCTCTCTGCTAGCTCTTCTTCTACTT