Contig 003040:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006G04Sequence544003040 (6)ref|XP_009774366.1|1e-15PREDICTED: putative DNA-binding protein ESCAROLA isoform X1 [Nicotiana sylvestr
JMCP011B12Sequence246003040 (6)
JMCP011E12Sequence267003040 (6)
JMCP012F03Sequence352003040 (6)ref|XP_009774366.1|6e-15PREDICTED: putative DNA-binding protein ESCAROLA isoform X1 [Nicotiana sylvestr
JMCP017G09Sequence603003040 (6)ref|XP_009774366.1|2e-15PREDICTED: putative DNA-binding protein ESCAROLA isoform X1 [Nicotiana sylvestr
JMSF019B15Sequence161003040 (6)

Alignment

This contig is upended


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rJMCP017G09+                                                                   CAA
                      ____________________________________________________________
consensus                                                                      CAA
 
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JMCP006G04+                                                          AAACACAGATATC
JMCP011E12+                                                          AAACACAGATAaC
rJMCP017G09+          AGAACAATCACATACAAAAgtaTCAACCATATGTCAACTAAAAATGCAAACACAGATATC
                      ____________________________________________________________
consensus             AGAACAATCACATACAAAACATTCAACCATATGTCAACTAAAAATGCAAACACAGATATC
 
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JMCP006G04+           AATtacagcCCGCAAAGAAAACCtaagagcGGCagaCcGTGttagatcGGAAAACAAAAG
JMCP011E12+           AATtTGTCGCCGCAAAGAAAACCtaagaCGGGCTCTCGcacttagaAGGGAAAACAAAAG
rJMSF019B15-                              ACCATTCTCGGGCTCTCGGTGAATCTAGGGAAAACAAAAG
JMCP011B12+                    CCGCAAAGAAAACgtaagagcGcgagagccacttagatcGGAAAAgttAAG
rJMCP017G09+          AtatacagcCCGCAAAGAAAACgtaagagcGGCagaCGGTGAAagaAGGGAAAACAAAAG
                      ____________________________________________________________
consensus             AATATGTCGCCGCAAAGAAAACCATTCTCGGGCTCTCGGTGAATCTAGGGAAAACAAAAG
 
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JMCP006G04+           AGattGAGTAACGATGGGGAAGGgttTATATAGATTAGAAGTTGAATGAACATAgtgCTG
JMCP011E12+           AGTAAGAGTAACGATGGGGAAGGCAATATATAGATTAGAAGTTGAATGAACATACACCTG
rJMSF019B15-          AGTAAGAGTAACGATGGGGAAGGCAATATATAGATTAGAAGTTGAATGAACATACACCTG
JMCP011B12+           tcTAtctcattCcATGGGGAAGGgttatTATAGATTAGAtcaTGAtacAACtaAgtgCac
rJMCP017G09+          AGattGAGTAACGATGGGGAAGGgttatTATAGATTAGAAGTTGAATGAACATAgtgCTG
                      ____________________________________________________________
consensus             AGTAAGAGTAACGATGGGGAAGGCAATATATAGATTAGAAGTTGAATGAACATACACCTG
 
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JMCP012F03+                   TTTTTTTTTCCCgcgggtctTgAaCTAtgatcTCGAGCAAGAAGGAATTAAG
JMCP006G04+           TTAGCCTTTTTTTTTTTCCCCGCCAAGATCATCTAACTAGTCGAGCAAGAAGGAATTAAG
JMCP011E12+           TTAGCC-TTTTTTTTTTCCCCGCCAAGATCATCTAACTAGTCGAGCAAGAAGGAATTAAG
rJMSF019B15-          TTAGCCTTTTTTTTTTTCCCCNCCAANATCATCTAACTAGNCNAGCAANAAGGANTTAAG
JMCP011B12+           aTtcCCTTTTTTTTTTTCCCCGCCAAGATCATCTAACTAGTCGAGCAAGAAGGAATTAAG
rJMCP017G09+          TTAGCCTTTTTTTTTTTCCCCGCCAAGATCATCTAACTAGTCGAGCAAGAAGGAATTAAG
                      ____________________________________________________________
consensus             TTAGCCTTTTTTTTTTTCCCCGCCAAGATCATCTAACTAGTCGAGCAAGAAGGAATTAAG
 
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JMCP012F03+           GATGATcCATCaactgGcaGGAATTTGGCCAGCCCATGTTTGCATACATCTGCAagGTCG
JMCP006G04+           GATGATGCATCTTGACGGTGGAATTTGGCCAGCCCATGTTTGCATACATCTGCATCGTCG
JMCP011E12+           GATGATGCATCTTGACGGTGGAATTTGGCCAGCCCATGTTTGCATACATCTGCATCGTCG
rJMSF019B15-          G                                                           
JMCP011B12+           GATGATGCATCTTGACGGTGGAATTTGGCCAGCCCATGTTTGCATACATCTGCATCGTCG
rJMCP017G09+          GATGATGCATCTTGACGGTGGAATTTGGCCAGCCCATGTTTGCATACATCTGCATCGTCG
                      ____________________________________________________________
consensus             GATGATGCATCTTGACGGTGGAATTTGGCCAGCCCATGTTTGCATACATCTGCATCGTCG
 
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JMCP012F03+           GAACTGcgTGGTTAGCGTTACCGTACGTTGGAccCCCACGGTTAAGAGGAGTCCCACgGC
JMCP006G04+           GAACTGGCTGGTTAGCGTTACCGTACGTTGGAGGCCCACGGTTAAGAGGAGTCCCACCGC
JMCP011E12+           GAACTGGCTGGTTAG                                             
JMCP011B12+           GAACTGGCTGGTTAG                                             
rJMCP017G09+          GAACTGGCTGGTTAGCGTTACCGTACGTTGGAGGCCCACGGTTAAGGGGAGTCCCACCGC
                      ____________________________________________________________
consensus             GAACTGGCTGGTTAGCGTTACCGTACGTTGGAGGCCCACGGTTAAGAGGAGTCCCACCGC
 
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JMCP012F03+           CATTGTCGTCAGAAGAGGCGCTCGAGGCATCCTCGGAAGGGCTGGCGGCTTCTGCAGCTT
JMCP006G04+           CATTGTCGTCAGAAGAGGCGCTCGAGGCATCCTCGGAAGGGCTGGCGGCTTCTGCAGCTT
rJMCP017G09+          CATTGTCGTCAGAAGAGGCGCTCGAGGCATCCTCGGAAGGGCTGGCGGCTTCTGCAGCTT
                      ____________________________________________________________
consensus             CATTGTCGTCAGAAGAGGCGCTCGAGGCATCCTCGGAAGGGCTGGCGGCTTCTGCAGCTT
 
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JMCP012F03+           GAGCGCTctttaaatcCATATTTGATTGGGCTTGGGGCAGTGGTGTGGAGGACGGCTTAT
JMCP006G04+           GAGCGCTGAAATTTAGCATATTTGATTGGGCTTGGGGCAGTGGTGTGGAGGACGGCTTAT
rJMCP017G09+          GAGCGCTGAAATTTAGCATATTTGATTGGGCTTGGGGCAGTGGTGTGGAGGACGGCTTAT
                      ____________________________________________________________
consensus             GAGCGCTGAAATTTAGCATATTTGATTGGGCTTGGGGCAGTGGTGTGGAGGACGGCTTAT
 
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JMCP012F03+           ACTTGGGCTTTTTCCCGTCAGCTATGAAGCTGCCCACAATCAGCTGTACTTGTGACGCCG
JMCP006G04+           ACTTGGGCTTTTTCCCGTCAGCTATGAAGCTGCCCACAATCAGCTGTACTTGTGACGCCG
rJMCP017G09+          ACTTGGGCTTTTTCCCGTCAGCTATGAAGCTGCCCACAATCAGCTGTACTTGTGACGCCG
                      ____________________________________________________________
consensus             ACTTGGGCTTTTTCCCGTCAGCTATGAAGCTGCCCACAATCAGCTGTACTTGTGACGCCG
 
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JMCP006G04+           CCTTCAGCGTCCCGGCAACTCCGCCACCTACAACTTTGCCATCGGC              
rJMCP017G09+          CCTTCAGCGTCCCGGCAACTCCGCCACCTACAACTTTGCCATCGGCCCCGGCCAATGACA
                      ____________________________________________________________
consensus             CCTTCAGCGTCCCGGCAACTCCGCCACCTACAACTTTGCCATCGGCCCCGGCCAATGACA