Contig 003039:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP008B07Sequence625003039 (4)ref|XP_009630887.1|1e-92PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like isoform
JMCP015A06Sequence261003039 (4)ref|XP_009798124.1|3e-20PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Nicoti
JMCP015C06Sequence502003039 (4)ref|XP_009630887.1|1e-58PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like isoform
JMCP016H04Sequence623003039 (4)ref|XP_009630887.1|9e-92PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like isoform

Alignment

This contig is upended


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rJMCP008B07+                                             TTCCCATTTCAGCCAGCAAGAAAGT
rJMCP016H04+                                               CCCATTTCAGCCAGCAAGAAAGT
                      ____________________________________________________________
consensus                                                TTCCCATTTCAGCCAGCAAGAAAGT
 
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rJMCP008B07+          CATGACATGCTCTGGCTGCCTATGCATCGTCTTGCAAAGGTCCATGAAATTAACAAAGAC
rJMCP016H04+          CATGACATGCTCTGGCTGCCTATGCATCGTCTTGCAAAGATCCATGAAATTAACAAAGAC
                      ____________________________________________________________
consensus             CATGACATGCTCTGGCTGCCTATGCATCGTCTTGCAAAGGTCCATGAAATTAACAAAGAC
 
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rJMCP008B07+          AGTCTTCTTTGTACCTTCACGAAGGACTTGAGGAGGCCTCATTACTGTTCTACGCCTGTC
rJMCP016H04+          AGTCTTCTTTGTGCCTTCACGAAGGACTTGAGGAGGCCTCATTACTGTTCTACGCCTGTC
rJMCP015C06+                                                TCATTACTGaaCTACGggTGTC
                      ____________________________________________________________
consensus             AGTCTTCTTTGTGCCTTCACGAAGGACTTGAGGAGGCCTCATTACTGTTCTACGCCTGTC
 
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rJMCP008B07+          TCCAGCAAGCTCGGGATTATTTTCACGAAGGATATTGAAAACACGACCTAGAAGCTCCTC
rJMCP016H04+          TCCAGCAAGCTCGGGATTATTTTCACGAAGGATATTGAAAACACGACCTAGAAGCTCCTC
rJMCP015C06+          TCCAGCAAGCTCGGGATTATTTTCACGAAGGATAaaGAAAACACctggatGAAGCTCCTC
                      ____________________________________________________________
consensus             TCCAGCAAGCTCGGGATTATTTTCACGAAGGATATTGAAAACACGACCTAGAAGCTCCTC
 
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rJMCP008B07+          ATATTCATAATCCCTGTCACTTCCTTCCCATGGATAGCGATGGAGAACAATTTCTTCAGC
rJMCP016H04+          ATATTCATAATCCCTGTCACTTCCTTCCCATGGATAGCGATGGAGAACAATTTCTTCAGC
rJMCP015C06+          ATATTCATAATCCCTGTCACTTCCTTCCCATGGATAGCGATGGAGAACAATTTCTTCAGC
                      ____________________________________________________________
consensus             ATATTCATAATCCCTGTCACTTCCTTCCCATGGATAGCGATGGAGAACAATTTCTTCAGC
 
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rJMCP008B07+          TTCTTCATCATCTCCGAAGTGATCATCTATATCGTCCCCTGTATTATCCATCTCATCATT
rJMCP016H04+          TTCTTCATCATCTCCcAAGTGATCATCTATATCGTCCCCTGTATTATCCATCTCATCATT
rJMCP015C06+          TTCTTCATCATCTCCGAAGTGATCATCTATATCGTCCCCTGTATTATCCATCTCATCATT
                      ____________________________________________________________
consensus             TTCTTCATCATCTCCGAAGTGATCATCTATATCGTCCCCTGTATTATCCATCTCATCATT
 
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rJMCP008B07+          CAAGAGATCAGTGTGTACAGGCTTCTTCTTCTTCTTTTTGCCAGAAAATGCTGTCTCAAG
rJMCP016H04+          CAAGAGATCAGTGTGTACAGGCTTCTTCTTCTTCTTTTTGCCAGAAAtTGCTGTCTCAAG
JMCP015A06+                                                  GCCAGAAAATGCTGTCTCAAG
rJMCP015C06+          CAAGAGATCAGTGTGTACAGGCTTCTTCTTCTTCTTTTTGCCAGAAAATGCTGTCTCAAG
                      ____________________________________________________________
consensus             CAAGAGATCAGTGTGTACAGGCTTCTTCTTCTTCTTTTTGCCAGAAAATGCTGTCTCAAG
 
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rJMCP008B07+          ACCATCTGAAACTGTCAAACTTTCAGTTTagaCAGCCAAGCTATCGACAGAATCAagaGC
rJMCP016H04+          ACCATCTGAAACTGTCAAACTTTCAGTTTTCTCAGCCAAGCTATCGACAGAATCAagTGC
JMCP015A06+           ACCATCTGAAACTGTCAAACTTTCAGTTTTCTCAGCCAAGCTATCGACAGAATCATCTGC
rJMCP015C06+          ACCATgaGAAACTcTCAAACTTTCAGTTTTCTCAGCCAAGCTATCGACAGAATCATCTGC
                      ____________________________________________________________
consensus             ACCATCTGAAACTGTCAAACTTTCAGTTTTCTCAGCCAAGCTATCGACAGAATCATCTGC
 
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rJMCP008B07+          TGCAGGATCCTGGATAACAACCTTCTTCTTCTTTTTCTTTTTTGTAGGATCAAATGGAGC
rJMCP016H04+          TGCAGGATCCTGGATAACAACCTTCTTCTTCTTTTTCTTTTTTGTAGGATCAAtTGGAGC
JMCP015A06+           TGCAGGATCCTGGATAACAACCTTCTTCTTCTTTTTCTTTTTTGTAGGATCAAATGGAGC
rJMCP015C06+          TGCAGGATCCTGGATAACAACCTTCTTCTTCTTTTTCTTTTTTGTAGGATCAAATGGAGC
                      ____________________________________________________________
consensus             TGCAGGATCCTGGATAACAACCTTCTTCTTCTTTTTCTTTTTTGTAGGATCAAATGGAGC
 
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rJMCP008B07+          AATATCTGCAACCTCCTCCTTCATCTCGTTCTGGATTTCCTCTTCAGCCATGACCGCACC
rJMCP016H04+          AATAagTGCAACCTCCTCCTTCATCTCGTTCTGGATTTCCTCTTCAGCCtaGACCGCACC
JMCP015A06+           AATATCTGCAACCTCCTCCTTCATCTCGTTCTGGATTTCCTCTTCAGCCATGACCGCACC
rJMCP015C06+          AATATCTGCAACCTCCTCCTTCATCTCGTTCTGGATTTCCTCTTCAGCCATGACCGCACC
                      ____________________________________________________________
consensus             AATATCTGCAACCTCCTCCTTCATCTCGTTCTGGATTTCCTCTTCAGCCATGACCGCACC
 
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rJMCP008B07+          TCCGAATTGACGCAGCGAAACTTGTTATGCTTTCGGATTATCTTCCAGGCCGACGATGAA
rJMCP016H04+          TCCGAATTGACGgtcCGAAACTTGTTATGCTTTCGGATaAagaTCCAGGCCGACGATGAA
JMCP015A06+           TCCGAATTGACGCAGCGAAACTTGTTATGCTTTCGGATTATCTTCCAGGCCGACGATGAA
rJMCP015C06+          TCCGAATTGACGCAGCGAAACTTGTTATGCTTTCGGATTATCTTCCAGGCCGACGATGAA
                      ____________________________________________________________
consensus             TCCGAATTGACGCAGCGAAACTTGTTATGCTTTCGGATTATCTTCCAGGCCGACGATGAA