Contig 003036:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006C04Sequence302003036 (3)ref|XP_007022155.1|7e-54Ubiquitin-specific protease 15, putative isoform 3 [Theobroma cacao] gb|EOY1368
JMCP017B06Sequence297003036 (3)ref|XP_007022155.1|3e-51Ubiquitin-specific protease 15, putative isoform 3 [Theobroma cacao] gb|EOY1368
JMCP019E10Sequence299003036 (3)ref|XP_010092717.1|3e-52Ubiquitin carboxyl-terminal hydrolase 15 [Morus notabilis] gb|EXB52062.1| Ubiqui

Alignment

This contig is upended


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rJMCP019E10+                                                                  ACAC
rJMCP017B06+                                                                    AC
rJMCP006C04+                                                                    AC
                      ____________________________________________________________
consensus                                                                     ACAC
 
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rJMCP019E10+          TATGATTGTCAGGGTGGGTGTTATGGCAAGATAAACAAGTGCATTACTTTCCCCGAAATG
rJMCP017B06+          TATGATTGTCAGGGTGGGTGTTATGGCAAGATAAACAAGTGCATTACTTTCCCCGAAATG
rJMCP006C04+          TATGATTGTCAGGGTGGGTGTTATGGCAAGATAAACAAGTGCATTACTTTCCCCGAAATG
                      ____________________________________________________________
consensus             TATGATTGTCAGGGTGGGTGTTATGGCAAGATAAACAAGTGCATTACTTTCCCCGAAATG
 
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rJMCP019E10+          CTGGATATGATACCATATATGACCGGGACCGATGATGTACCTCCGCTTTACATGCTTTAT
rJMCP017B06+          CTGGATATGATACCATATATGACCGGGACCGATGATGTACCTCCGCTTTACATGCTTTAT
rJMCP006C04+          CTGGATATGATACCATATATGACCGGGACCGATGATGTACgaCCGCTTTACATGCTTTAT
                      ____________________________________________________________
consensus             CTGGATATGATACCATATATGACCGGGACCGATGATGTACCTCCGCTTTACATGCTTTAT
 
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rJMCP019E10+          GCTGTCGTCGTCCACTTAGATACACTAAATGCGTCATTTTCGGGGCATTATATATCCTAT
rJMCP017B06+          GCTGTCGTCGTCCACTTAGATACACTAAATGCGTCATTTTCGGGGCATTATATATCCTAT
rJMCP006C04+          GCTGTCGTCGTCCACTTAGATACtgTAAATGCGTCATTTTCGGGGgtaTATATATCCTAT
                      ____________________________________________________________
consensus             GCTGTCGTCGTCCACTTAGATACACTAAATGCGTCATTTTCGGGGCATTATATATCCTAT
 
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rJMCP019E10+          GTGAAAGATATGCAAGGCAATTGGTTCAGGATTGATGATACCAAGGTTGAGCAAGTACCT
rJMCP017B06+          GTGAAAGATATGCAAGGCAATTGGTTCAGGATTGATGATACCAAGGTTGAGCAAGTACCT
rJMCP006C04+          GTGAAAGATATGCAAGGCAtTTGGTTCAGGATTGATGATACCAAGGTTGAGgttGTACCT
                      ____________________________________________________________
consensus             GTGAAAGATATGCAAGGCAATTGGTTCAGGATTGATGATACCAAGGTTGAGCAAGTACCT
 
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rJMCP019E10+          ATGAGCCGAGTTATGACAGAAGGCGCATATATCTTGTTTTACATGAGGT           
rJMCP017B06+          ATGAGCCGAGTTACGACAGAAGGCGCATATATCTTGTTTTACATGAGGT           
rJMCP006C04+          ATGAGCCGAGTTATGACAGAAGGCGCATATATCTTGTTTTACATGAGGTCATCCCCCCGA
                      ____________________________________________________________
consensus             ATGAGCCGAGTTATGACAGAAGGCGCATATATCTTGTTTTACATGAGGTCATCCCCCCGA