Contig 003035:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP001F03Sequence554003035 (7)
JMCP003G05Sequence612003035 (7)
JMCP004F01Sequence645003035 (7)
JMCP004G10Sequence617003035 (7)
JMCP011A06Sequence607003035 (7)
JMCP011A12Sequence542003035 (7)
JMCP011H10Sequence420003035 (7)

Alignment

This contig is upended


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JMCP004F01+                                                 TCGAAAGGACTTAGACCCCACA
JMCP004G10+                                                           TTAGACCCCACA
JMCP011A06+                                                               ACCCCACA
JMCP011A12+                                                           TTAGACCCCACA
JMCP011H10+                                                             AGACCCCACA
JMCP003G05+                                                           TTAGACCCCACA
                      ____________________________________________________________
consensus                                                   TCGAAAGGACTTAGACCCCACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP004F01+           TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP004G10+           TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP011A06+           TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP011A12+           TccggaAAATCgttgattgTtAagaAtAAAAGAGTAACTAAAGATaACAGtCGAAGGggg
JMCP011H10+           TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
JMCP003G05+           TGGggTtAtaggAACTAAgattaCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
rJMCP001F03+                                                       TACAGACGAAGGCCC
                      ____________________________________________________________
consensus             TGGCCTAAATCCAACTAACTAATCTAAAAAAGAGTAACTAAAGATTACAGACGAAGGCCC
 
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JMCP004F01+           CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP004G10+           CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP011A06+           CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP011A12+           gccccgataAACATcgcgccggggtAGaggCtacgaAGCATAcgtgattgcgaAGACCtt
JMCP011H10+           CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
JMCP003G05+           CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
rJMCP001F03+          CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
                      ____________________________________________________________
consensus             CGGGGCTATAACATGCGCGGCCCCAAGTCCCATGCTAGCATAGCACTAACGCTAGACCAA
 
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JMCP004F01+           ATACTAACTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP004G10+           ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP011A06+           ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP011A12+           AatgatcgaAAGTAATAATAAATtttcAATAAAAAATAAAAAtatgatggAAGTAGTATG
JMCP011H10+           ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
JMCP003G05+           ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
rJMCP001F03+          ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
                      ____________________________________________________________
consensus             ATACTAGCTAAGTAATAATAAATAAAGAATAAAAAATAAAAAATACTACCAAGTAGTATG
 
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JMCP004F01+           TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP004G10+           TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP011A06+           TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP011A12+           TAGTATGTAGAGTGCtgcggacgTCcAaGAATGAGAATCAAGTATtcaATcaCtcgATCA
JMCP011H10+           TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
JMCP003G05+           TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
rJMCP001F03+          TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
                      ____________________________________________________________
consensus             TAGTATGTAGAGTGCACGCCTGCTCGATGAATGAGAATCAAGTATAGTATGTCAGCATCA
 
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JMCP004F01+           CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP004G10+           CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP011A06+           CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP011A12+           gtcCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCgATCTTagcacTCtCc
JMCP011H10+           CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
JMCP003G05+           CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
rJMCP001F03+          CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
                      ____________________________________________________________
consensus             CAGCCCATCATATAAATGTGTAAATGGGCAACAAGGGGAAAAGCCATCTTTCGTGTCACG
 
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JMCP004F01+           CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCGATCTGAC
JMCP004G10+           CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
JMCP011A06+           CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
JMCP011A12+           gcCCATAGCAgTTCCggcggtcggcgtggtTAcgcaggCActtgaATAATGCAAagTGAC
JMCP011H10+           CGCCAatcgaaaaagggcggtcggcgtggtatcgcagggtcttgatattacgttagacgg
JMCP003G05+           CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
rJMCP001F03+          CGCCATAGCACTTCCCCGCCAGCCACACCATAGCGTCCCAGAACTATAATGCAATCTGAC
                      ____________________________________________________________
consensus             CGCCATAGCACTTCCCCGCCAGCCGCACCATAGCGTCCCAGAACTATAATGCAATCTGAC
 
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JMCP004F01+           CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTA      
JMCP004G10+           CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
JMCP011A06+           CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
JMCP011A12+           CGGcgacCAAggtgttggcgAACAaCagggccGcacgataactgTGCggacTatggAAGC
JMCP011H10+           gccccacgttggtgt                                             
JMCP003G05+           CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
rJMCP001F03+          CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
                      ____________________________________________________________
consensus             CGGGCTGCAACCACAACCGCAACATCTCCCGGGGTGCTATTGACTGCCCTGTTACCAAGC
 
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JMCP004G10+           AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
JMCP011A06+           AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
JMCP011A12+           AATAATACACACCTCgagtgggAatccgattttgaagcGCACtgActggcATATAtTctc
JMCP003G05+           AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
rJMCP001F03+          AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
                      ____________________________________________________________
consensus             AATAATACACACCTCCTC-CCCATAGGCTAAAACTTCGGCACACAGACCGATATAATGAG
 
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JMCP004G10+           CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
JMCP011A06+           CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
JMCP011A12+           gttgCAtatGCATCAACCgactTCAGTACCAGCAACAAACCAGAACCAAC          
JMCP003G05+           CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
rJMCP001F03+          CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
                      ____________________________________________________________
consensus             CAACCAATAGCATCAACCCTGATCAGTACCAGCAACAAACCAGAACCAACCCTAACGGGA
 
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JMCP004G10+           TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
JMCP011A06+           TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
JMCP003G05+           TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
rJMCP001F03+          TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA
                      ____________________________________________________________
consensus             TTCGCTACTATGGGTCAGCAACAAGCCTGGACTACCGCCAACGGATTTGAAAAATCCCTA