Contig 003033:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP019H05Sequence432003033 (2)emb|CAN64512.1|4e-62hypothetical protein VITISV_004351 [Vitis vinifera]156003033 (2)gb|KEH38129.1|2e-19hypothetical protein MTR_2g461800 [Medicago truncatula]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMCP019H05- GAcgACCaCtGa
JMCP019H05+ GAGCACCTCAGT
                      ____________________________________________________________
consensus GAGCACCTCAGT
 
. : . : . : . : . : . :
rJMCP019H05- ATAgctTgcgcgGGAcaAACTGcctcaCATTACtgCTAtccggAACTTgttTTCACCAAA
JMCP019H05+ ATACGATCGCGCGGAGTAACTGGGAGTCATTACACCTAAGGCCAACTTCAATTCACCAAA
                      ____________________________________________________________
consensus ATACGATCGCGCGGAGTAACTGGGAGTCATTACACCTAAGGCCAACTTCAATTCACCAAA
 
. : . : . : . : . : . :
rJMCP019H05- CTAAGcaaCATCTgcacatcactTTcaGctgagcTACttccATATTGtcaActgGGTTTC
JMCP019H05+ CTAAGGTTCATCTCGTGTAGTGATTGTGGACTCGTACAAGGATATTGAGTAGACGGTTTC
                      ____________________________________________________________
consensus CTAAGGTTCATCTCGTGTAGTGATTGTGGACTCGTACAAGGATATTGAGTAGACGGTTTC
 
. : . : . : . : . : . :
rJMCP019H05- TGTATCtctgagttCCCTATCTTT
JMCP019H05+ TGTATCAGACTCAACCCTATCTTTCGTAGCATGCATTCCCATCCGTGTCGCAACTGATTT
                      ____________________________________________________________
consensus TGTATCAGACTCAACCCTATCTTTCGTAGCATGCATTCCCATCCGTGTCGCAACTGATTT
 
. : . : . : . : . : . :
JMCP019H05+ GGTAAGCTACGTGTCCGGTGCACGGAGAACTGCCTTCGGTCCCCCAAACTTACTTACTCG
                      ____________________________________________________________
consensus GGTAAGCTACGTGTCCGGTGCACGGAGAACTGCCTTCGGTCCCCCAAACTTACTTACTCG
 
. : . : . : . : . : . :
JMCP019H05+ TGGAAACCTTCCGGCCGCCCAACGACCTATAACGCTAGTCACTACTCCCACTGAGGCTAG
                      ____________________________________________________________
consensus TGGAAACCTTCCGGCCGCCCAACGACCTATAACGCTAGTCACTACTCCCACTGAGGCTAG
 
. : . : . : . : . : . :
JMCP019H05+ GAAGTAAGCCCCACAACCCAAAGCGGCGAAGAACAAATAGAATTTGCTACAAAAGCCGGC
                      ____________________________________________________________
consensus GAAGTAAGCCCCACAACCCAAAGCGGCGAAGAACAAATAGAATTTGCTACAAAAGCCGGC
 
. : . : . : . : . : . :
JMCP019H05+ TAACGGGGGTATTCCTGCGTATGAGAACATAGTAATGGAGAAGGTAATTGCCACTCTGCG
                      ____________________________________________________________
consensus TAACGGGGGTATTCCTGCGTATGAGAACATAGTAATGGAGAAGGTAATTGCCACTCTGCG