Contig 003031:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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JMFN015D08+                               CGGGGGCTTCGCTAGGAGGCGCAGGTGGGCCTTGAAGCTC
JMFS010D04+                        TTAGGTCCGGGGGCTTCGCTAGGAGGCGCAGGTGGGCCTTGAAGCTC
JMFN030A13+                               CGGGGGCTTCGCTAGGAGGCGCAGGTGGGCC-TGAAGCTC
JMFN031G16+                                                             CTTGAAGCTC
JMFN008C15+                                                GGCGCAGGTGGGCCTTGAAGCTC
JMFN013J23+                                              GAGGCGCAGGTGGGCCTTGAAGCTC
rJMCP003D09+                                               GGCGCAGGTGGGCCTTGAAGCTC
rJMCP017H01+                                                             TTGAAGCTC
JMCP017G11+                                                                GAAGCTC
                      ____________________________________________________________
consensus                          TTAGGTCCGGGGGCTTCGCTAGGAGGCGCAGGTGGGCCTTGAAGCTC
 
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JMFN015D08+           GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
JMFS010D04+           GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
JMFN030A13+           GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
JMFN031G16+           GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
JMFN008C15+           GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
JMFN013J23+           GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
rJMCP003D09+          GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
rJMCP001D08+                                                           CCTTTGCCCTT
JMFS004D09+                                                                 GCCCTT
rJMCP017H01+          GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
JMCP017G11+           GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
                      ____________________________________________________________
consensus             GGGAGAAGGAGCCGGTGAAGATGCGGTGTGCTTCTTACTCTTCTTCTTGCCTTTGCCCTT
 
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JMFN015D08+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
JMFS010D04+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
JMFN030A13+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
JMFN031G16+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
JMFN008C15+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
JMFN013J23+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
rJMCP003D09+          GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
rJMCP001D08+          GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
JMFS004D09+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
rJMCP017H01+          GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
JMCP017G11+           GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
                      ____________________________________________________________
consensus             GCTCTTGCTCGGAGCCGGAGCAGGAGTCTCTGATGATGTAGGCGGGGCGACGGGGGCCGC
 
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JMFN015D08+           GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
JMFS010D04+           GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
JMFN030A13+           GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
JMFN030B23+                           GCAGCAGGTGGAGTGGGGGCTTCCGGCGCGGGAGACGGTGGAGA
JMFN031G16+           GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
JMFN008C15+           GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
JMFN013J23+           GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
rJMCP003D09+          GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
rJMCP001D08+          GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
JMFS004D09+           GGCGGGAGGGNAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
rJMCP017H01+          GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
JMCP017G11+           GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
                      ____________________________________________________________
consensus             GGCGGGAGGGGAAGAGGCAGCAGGTGGAGTGGCGGCCTCCGGCGCGGGAGACGGTGGAGA
 
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JMFN015D08+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMFS010D04+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMFN030A13+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMFN030B23+           TTGGTCAGGCGCGGGTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMFN031G16+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMFN008C15+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMFN013J23+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
rJMCP003D09+          TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
rJMCP001D08+          TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMFS004D09+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
rJMCP017H01+          TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
JMCP017G11+           TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
                      ____________________________________________________________
consensus             TTGGACAGGCGCGGCTGCGGGTGGGGACTTCACGGGAGCGGCGGCCGGTGGAGAGCTCAC
 
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JMFN015D08+           TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
JMFS010D04+           TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
JMFN030A13+           TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
JMFN030B23+           TGTCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
JMFS138H12+                                            CTTAGCTGGCGGCGCGGCAGCTGGAGC
JMFN031G16+           TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
JMFN008C15+           TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
JMFN013J23+           TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
rJMCP003D09+          TGGCGCGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGgacGAGC
rJMCP001D08+          TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGgacGAGC
JMFS004D09+           TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
rJMCP017H01+          TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
JMCP017G11+           TGGCACGGGAGCCGGGGGTGCAGAGTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
                      ____________________________________________________________
consensus             TGGCACGGGAGCCGGGGGTGCAGATTCCGGCGTCTTAGCTGGCGGCGCGGCAGCTGGAGC
 
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JMFN015D08+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFS010D04+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFN030A13+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFN030B23+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFS138H12+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFN031G16+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFN008C15+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFN013J23+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
rJMCP003D09+          CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
rJMCP001D08+          CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMFS004D09+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
rJMCP017H01+          CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
JMCP017G11+           CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
                      ____________________________________________________________
consensus             CGTGACTGCGGCTGAGGGTGGAGTAGAGGCCGGAGCCTGCGCCGGAGGAGCCGAAGCGGG
 
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JMFN015D08+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMFS010D04+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMFN030A13+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMFN030B23+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCATCCGGAGAAGT
JMFS138H12+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMFN031G16+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMFN008C15+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMFN013J23+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
rJMCP003D09+          AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
rJMCP001D08+          AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMFS004D09+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
rJMCP017H01+          AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
JMCP017G11+           AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
                      ____________________________________________________________
consensus             AGCGGGAGTTTTAGGCTTTGAAGGAGCGGCAGCTGTGGAAGGCGAAGCAGCCGGAGAAGT
 
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JMFN015D08+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFS010D04+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFN030A13+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFN030B23+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFS138H12+           GGCGGCGTGCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFN031G16+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFN008C15+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFN013J23+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
rJMCP003D09+          GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
rJMCP001D08+          GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMFS004D09+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
rJMCP017H01+          GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
JMCP017G11+           GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGACCGGAGACTGACCTC
                      ____________________________________________________________
consensus             GGCGGCG-GCCTTAGACGCAGCCGGAGCTTTGGCAGGCGAAGCGGCCGGAGACTGACCTC
 
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JMFN015D08+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
JMFS010D04+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
JMFN030A13+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
JMFN030B23+           CGTCGCCGGCCGCTACAATGCGCATGAGCACCTCCGCAAACCCAACC             
JMFS138H12+           CGACGCCGGCCACTACAATGCACATAAGC                               
JMFN031G16+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
JMFN008C15+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
JMFN013J23+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATTCATTG
rJMCP003D09+          CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
rJMCP001D08+          CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
JMFS004D09+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
rJMCP017H01+          CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
JMCP017G11+           CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
                      ____________________________________________________________
consensus             CGACGCCGGCCACTACAATGCACATAAGCACCACCGCAAACCCAACCTTCCGATCCATCG
 
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JMFN015D08+           CTTCAACACAGAAAAACAAAACAGAAAAC                               
JMFS010D04+           CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGC                      
JMFN030A13+           CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGC                      
JMFN031G16+           CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAG          
JMFN008C15+           CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAA        
JMFN013J23+           CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAAGA      
rJMCP003D09+          CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAAGAGAATGG
rJMCP001D08+          CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAAGAGAATGG
JMFS004D09+           CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAAGAGAA   
rJMCP017H01+          CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAAGAGAATGG
JMCP017G11+           CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAAGAGAATGG
                      ____________________________________________________________
consensus             CTTCAACACAGAAAAACAAAACAGAAAACTTCTATTGCAAAAAACAACAGAAGAGAATGG