Contig 003028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP007A05Sequence627003028 (4)emb|CDP12860.1|2e-33unnamed protein product [Coffea canephora]
JMFN019B04Sequence580003028 (4)emb|CDP12860.1|1e-22unnamed protein product [Coffea canephora]
JMSF007M24Sequence345003028 (4)emb|CDP12860.1|9e-36unnamed protein product [Coffea canephora]632003028 (4)emb|CDP12860.1|2e-33unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN019B04+ ACATCATCATCAATATATATAATAT
                      ____________________________________________________________
consensus ACATCATCATCAATATATATAATAT
 
. : . : . : . : . : . :
JMFN019B04+ AATTCCAATCAAAGTAGAGTATAAATAGCAGGATTACATATCACAAATATAATATATATT
rJMSF007M24- ATAAATAGCAGGATTACATATCACAAATATAATATATATT
JMCP007A05+ TTACATATCACAAATATAATATATATT
                      ____________________________________________________________
consensus AATTCCAATCAAAGTAGAGTATAAATAGCAGGATTACATATCACAAATATAATATATATT
 
. : . : . : . : . : . :
JMFN019B04+ GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
rJMSF007M24- GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
JMCP007A05+ GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
                      ____________________________________________________________
consensus GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
 
. : . : . : . : . : . :
JMFN019B04+ ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
rJMSF007M24- ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
JMCP007A05+ ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
                      ____________________________________________________________
consensus ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
 
. : . : . : . : . : . :
JMFN019B04+ TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
rJMSF007M24- TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
JMCP007A05+ TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
                      ____________________________________________________________
consensus TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
 
. : . : . : . : . : . :
JMFN019B04+ GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAAAGTTAGGGCGGAAAGTGATCC
rJMSF007M24- GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAAAGTTAGGGCGGAAAGTGATCC
JMCP007A05+ GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAGAGTTAGGGCGGAAtGTGATCC
                      ____________________________________________________________
consensus GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAAAGTTAGGGCGGAAAGTGATCC
 
. : . : . : . : . : . :
JMFN019B04+ TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
rJMSF007M24- TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
JMSF007M24+ AGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
JMCP007A05+ TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
                      ____________________________________________________________
consensus TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
 
. : . : . : . : . : . :
JMFN019B04+ GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
rJMSF007M24- GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
JMSF007M24+ GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
JMCP007A05+ GGAATCGTAGTAGGTGTGGGTcAATTTGGTCTTGATCCACTTGAAGCTGTTCCTgttGGA
                      ____________________________________________________________
consensus GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
 
. : . : . : . : . : . :
JMFN019B04+ TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
rJMSF007M24- TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
JMSF007M24+ TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
JMCP007A05+ TGATTTGAACTTACCCTCgtaGGCGTACATGTTATAACCCGCCACCCagaTCCaCCTCTT
                      ____________________________________________________________
consensus TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
 
. : . : . : . : . : . :
JMFN019B04+ CACCTCCGGGTTGCAGTCTCCTGCAGGGC
rJMSF007M24- CACCTCCGGGTTGCAGTCTCCTGCAGGGCCATTGAAGCTGTAGGATTTGGTGCGGCCCTC
JMSF007M24+ CACCTCCGGGTTGCAGTCTCCTGCAGGGCCATTGAAGCTGTAGGATTTGGTGCGGCCCTC
JMCP007A05+ CAgCTCCGGGTTGCAGagTCCTGgtcGGCTATTGAAGCTGTAGGATTTGGTGCGGCCCTC
                      ____________________________________________________________
consensus CACCTCCGGGTTGCAGTCTCCTGCAGGGCCATTGAAGCTGTAGGATTTGGTGCGGCCCTC
 
. : . : . : . : . : . :
rJMSF007M24- GAAGTCNAACCGGGCCTCCGTGTANGCTGATGATGAGTGGTAAGGGAAAGATTTGCTCTT
JMSF007M24+ GAAGTCGAACCGGGCCTCCGTGTAGGCTGATGATGAGTGGTAAGGGAAAGATTTGCTCTT
JMCP007A05+ cAAGTCGAACCGGGCCTCCGTGTAGGCTGATGATGAGTGGattGGGAAAGATTTGgagTT
                      ____________________________________________________________
consensus GAAGTCGAACCGGGCCTCCGTGTAGGCTGATGATGAGTGGTAAGGGAAAGATTTGCTCTT
 
. : . : . : . : . : . :
rJMSF007M24- CTCCATAATAATGAANAGTTGAAGATGAANATGAANATGATAAAGAAGGC
JMSF007M24+ CTCCATAATAATGAAGAGTTGAAGATGAAGATGAAGATGATAAAGAAGGC
JMCP007A05+ CTCCATAATAtTGAAGAcTTGAAGATGAAGATGAAGATGtatAAGAAGGCCGGCCGGAgt
                      ____________________________________________________________
consensus CTCCATAATAATGAAGAGTTGAAGATGAAGATGAAGATGATAAAGAAGGCCGGCCGGACA