Contig 003028:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP007A05Sequence627003028 (4)emb|CDP12860.1|2e-33unnamed protein product [Coffea canephora]
JMFN019B04Sequence580003028 (4)emb|CDP12860.1|1e-22unnamed protein product [Coffea canephora]
JMSF007M24Sequence345003028 (4)emb|CDP12860.1|9e-36unnamed protein product [Coffea canephora]632003028 (4)emb|CDP12860.1|2e-33unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFN019B04+                                              ACATCATCATCAATATATATAATAT
                      ____________________________________________________________
consensus                                                ACATCATCATCAATATATATAATAT
 
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JMFN019B04+           AATTCCAATCAAAGTAGAGTATAAATAGCAGGATTACATATCACAAATATAATATATATT
rJMSF007M24-                              ATAAATAGCAGGATTACATATCACAAATATAATATATATT
JMCP007A05+                                            TTACATATCACAAATATAATATATATT
                      ____________________________________________________________
consensus             AATTCCAATCAAAGTAGAGTATAAATAGCAGGATTACATATCACAAATATAATATATATT
 
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JMFN019B04+           GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
rJMSF007M24-          GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
JMCP007A05+           GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
                      ____________________________________________________________
consensus             GCAAAAATATAATTAAAGCTGATACATTATCATACATCTATATATATATAGATGGATGAG
 
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JMFN019B04+           ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
rJMSF007M24-          ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
JMCP007A05+           ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
                      ____________________________________________________________
consensus             ATCGATACCATAAAGATAAATTAAGCTTGGGAAAAGAAAAAGAAACCCCGGCCTGCAATA
 
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JMFN019B04+           TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
rJMSF007M24-          TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
JMCP007A05+           TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
                      ____________________________________________________________
consensus             TAATTGGATGAAGAGTGCAGTCACTGCACGTACGTACGACAAGAAGCTAGATAAGAGGAC
 
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JMFN019B04+           GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAAAGTTAGGGCGGAAAGTGATCC
rJMSF007M24-          GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAAAGTTAGGGCGGAAAGTGATCC
JMCP007A05+           GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAGAGTTAGGGCGGAAtGTGATCC
                      ____________________________________________________________
consensus             GGGATGGGATCGGATTGGATCGGAATTCGAAGTAAGCAAAGTTAGGGCGGAAAGTGATCC
 
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JMFN019B04+           TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
rJMSF007M24-          TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
JMSF007M24+                  AGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
JMCP007A05+           TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
                      ____________________________________________________________
consensus             TATATGTAGGTGTAGTATATATGTATGTGTGGATAGAAGATTATTGAGTTAAGTTTGGGA
 
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JMFN019B04+           GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
rJMSF007M24-          GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
JMSF007M24+           GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
JMCP007A05+           GGAATCGTAGTAGGTGTGGGTcAATTTGGTCTTGATCCACTTGAAGCTGTTCCTgttGGA
                      ____________________________________________________________
consensus             GGAATCGTAGTAGGTGTGGGTGAATTTGGTCTTGATCCACTTGAAGCTGTTCCTCAAGGA
 
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JMFN019B04+           TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
rJMSF007M24-          TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
JMSF007M24+           TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
JMCP007A05+           TGATTTGAACTTACCCTCgtaGGCGTACATGTTATAACCCGCCACCCagaTCCaCCTCTT
                      ____________________________________________________________
consensus             TGATTTGAACTTACCCTCCATGGCGTACATGTTATAACCCGCCACCCTCTTCCTCCTCTT
 
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JMFN019B04+           CACCTCCGGGTTGCAGTCTCCTGCAGGGC                               
rJMSF007M24-          CACCTCCGGGTTGCAGTCTCCTGCAGGGCCATTGAAGCTGTAGGATTTGGTGCGGCCCTC
JMSF007M24+           CACCTCCGGGTTGCAGTCTCCTGCAGGGCCATTGAAGCTGTAGGATTTGGTGCGGCCCTC
JMCP007A05+           CAgCTCCGGGTTGCAGagTCCTGgtcGGCTATTGAAGCTGTAGGATTTGGTGCGGCCCTC
                      ____________________________________________________________
consensus             CACCTCCGGGTTGCAGTCTCCTGCAGGGCCATTGAAGCTGTAGGATTTGGTGCGGCCCTC
 
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rJMSF007M24-          GAAGTCNAACCGGGCCTCCGTGTANGCTGATGATGAGTGGTAAGGGAAAGATTTGCTCTT
JMSF007M24+           GAAGTCGAACCGGGCCTCCGTGTAGGCTGATGATGAGTGGTAAGGGAAAGATTTGCTCTT
JMCP007A05+           cAAGTCGAACCGGGCCTCCGTGTAGGCTGATGATGAGTGGattGGGAAAGATTTGgagTT
                      ____________________________________________________________
consensus             GAAGTCGAACCGGGCCTCCGTGTAGGCTGATGATGAGTGGTAAGGGAAAGATTTGCTCTT
 
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rJMSF007M24-          CTCCATAATAATGAANAGTTGAAGATGAANATGAANATGATAAAGAAGGC          
JMSF007M24+           CTCCATAATAATGAAGAGTTGAAGATGAAGATGAAGATGATAAAGAAGGC          
JMCP007A05+           CTCCATAATAtTGAAGAcTTGAAGATGAAGATGAAGATGtatAAGAAGGCCGGCCGGAgt
                      ____________________________________________________________
consensus             CTCCATAATAATGAAGAGTTGAAGATGAAGATGAAGATGATAAAGAAGGCCGGCCGGACA