Contig 003027:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP006A03Sequence244003027 (4)ref|XP_009619449.1|1e-04PREDICTED: subtilisin-like protease isoform X1 [Nicotiana tomentosiformis]
JMCP010C07Sequence179003027 (4)ref|XP_009600483.1|3e-04PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT5.3 [Nicotiana tome
JMCP010C09Sequence157003027 (4)
JMCP016E04Sequence182003027 (4)ref|XP_009600483.1|3e-04PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease SBT5.3 [Nicotiana tome

Alignment

This contig is upended


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JMCP006A03+                                                                   CTTT
                      ____________________________________________________________
consensus                                                                     CTTT
 
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rJMCP010C07+                                               CATCAAAACATGTTTGATTaTCA
rJMCP016E04+                                               CATCAAAACATGTTTGATTTTCA
rJMCP010C09+                                               CATCAAAACATGTTTGATTTTCA
JMCP006A03+           TTTTTTAAATGCAACCATAAAAAAAAACTTTATTCAACATCAAAACATGTTTGATTTTCA
                      ____________________________________________________________
consensus             TTTTTTAAATGCAACCATAAAAAAAAACTTTATTCAACATCAAAACATGTTTGATTTTCA
 
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rJMCP010C07+          TAgacGTCTGCCTCAAGTTAGTCACATGTCTAACAATTTGTCGCTTTAACTGATTGACTC
rJMCP016E04+          TACTGGTCTGCCTCAAGTTAGTCACATGTCTAACAATTTGTCGCTTTAACTGATTGACTC
rJMCP010C09+          TACTGGTCTGCCTCAAGTTAGTCACATGTCTAACAATTTGTCGCTTTAACTGATTGACTC
JMCP006A03+           TACTGGTCTGCCTCAAGTTAGTCACATGTCTAACAATTTGTCGCTTTAACTGATTGACTC
                      ____________________________________________________________
consensus             TACTGGTCTGCCTCAAGTTAGTCACATGTCTAACAATTTGTCGCTTTAACTGATTGACTC
 
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rJMCP010C07+          CCTTACTCAACATTTACAACGATTGGACTTCTAACTTTATATTTTCCGCTAGTCCATGTA
rJMCP016E04+          CCTTACTCAACATTTACAACGATTGGACTTCTAACTTTATATTTTCCGCTAGTCCATGTA
rJMCP010C09+          CCTTACTCAACATTTACAACGATTGGACTTCTAACTTTATATTTTCCGCTAGTCCATGTA
JMCP006A03+           CCTTACTCAACATTTACAACGATTGGACTTCTAACTTTATATTTTCCGCTAGTCCATGTA
                      ____________________________________________________________
consensus             CCTTACTCAACATTTACAACGATTGGACTTCTAACTTTATATTTTCCGCTAGTCCATGTA
 
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rJMCP010C07+          ATTGACCCAAATATGTTTGTCTCAAGGGATGATGAA                        
rJMCP016E04+          ATTGACCCAAATATGTTTGTCTCAAGGGATGATGAA                        
rJMCP010C09+          ATTGACCCAAA                                                 
JMCP006A03+           ATTGACCCAAATATGTTTGTCTCAAGGGATGATGAAGCCGTAAAGGTCACTCTGCGTTGA
                      ____________________________________________________________
consensus             ATTGACCCAAATATGTTTGTCTCAAGGGATGATGAAGCCGTAAAGGTCACTCTGCGTTGA