Contig 003024:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP002B02Sequence116003024 (6)
JMCP003B12Sequence116003024 (6)
JMCP019F12Sequence104003024 (6)
JMFF020L16Sequence507003266 (5)ref|XP_006343392.1|3e-15PREDICTED: BUD13 homolog [Solanum tuberosum]742003024 (6)ref|XP_009613363.1|3e-66PREDICTED: BUD13 homolog isoform X2 [Nicotiana tomentosiformis]
JMFF035H18Sequence601003266 (5)ref|XP_009760789.1|2e-19PREDICTED: BUD13 homolog [Nicotiana sylvestris]691003024 (6)ref|XP_006343392.1|1e-45PREDICTED: BUD13 homolog [Solanum tuberosum]
JMFF043M05Sequence613003266 (5)ref|XP_011093999.1|1e-29PREDICTED: BUD13 homolog [Sesamum indicum]610003024 (6)ref|XP_009613363.1|4e-45PREDICTED: BUD13 homolog isoform X2 [Nicotiana tomentosiformis]

Alignment

This contig is upended


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rJMFF020L16+                                   TGGCACAAAAGCGTGAGATGGAGGCTAGGCTTGAA
                      ____________________________________________________________
consensus                                      TGGCACAAAAGCGTGAGATGGAGGCTAGGCTTGAA
 
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rJMFF020L16+          GAATTGGAAAGTGAGAAGGAGAAACCATTTGCACGGAGCAGAGATGACCCCGAACTGGAC
                      ____________________________________________________________
consensus             GAATTGGAAAGTGAGAAGGAGAAACCATTTGCACGGAGCAGAGATGACCCCGAACTGGAC
 
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rJMFF043M05+                                                              AGAAAAAG
rJMFF035H18+                                                              AGAAAAAG
rJMFF020L16+          AATATGCTGAAGGAGAGGTTGAGATGGGGTGACCCCATGGCACATTTAGTCAAGAAAAAG
                      ____________________________________________________________
consensus             AATATGCTGAAGGAGAGGTTGAGATGGGGTGACCCCATGGCACATTTAGTCAAGAAAAAG
 
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rJMFF043M05+          AGAGTGGAGCAGGTTTTGCCTGACCTCGGTGCAGATGACAAAATGAAAGAATCAGGTTTT
rJMFF035H18+          AGAGCGGAGCAGGTTTTGCCTGACATCGGTGCAGATGACAAAATGAAAGAATCTGGTTTC
rJMFF020L16+          AGAGTGGAGCAGGTTTTGCCTGACCTCGGTGCAGATGACAAAATGAAAGAATCAGGTTTT
                      ____________________________________________________________
consensus             AGAGTGGAGCAGGTTTTGCCTGACCTCGGTGCAGATGACAAAATGAAAGAATCAGGTTTT
 
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rJMFF043M05+          ATAATTCCCCAAGAAATTCCCCCTCACAGCTGGATACGCAGAGGCTTGGATGCAGCACCG
rJMFF035H18+          ATAATTCCCCAAGAAATACCCCCTCACAGCTGGATACGTAGAGGCTTGGATGCAGCACCC
rJMFF020L16+          ATAATTCCCCAAGAAATTCCCCCTCACAGCTGGATACGCAGAGGCTTGGATGCAGCACCG
                      ____________________________________________________________
consensus             ATAATTCCCCAAGAAATTCCCCCTCACAGCTGGATACGCAGAGGCTTGGATGCAGCACCG
 
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rJMFF043M05+          AATCGATATGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
rJMFF035H18+          AATCGCTGTGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
rJMFF020L16+          AATCGATATGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
                      ____________________________________________________________
consensus             AATCGATATGGTATCAAACCAGGACGGCACTGGGATGGGGTTGACCGCAGTAATGGTTAT
 
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rJMFF043M05+          GAGAAACAAATGTTTAAACGTGCGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
rJMFF035H18+          GAGAAACAAATGTTTAACCGTATGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
rJMFF020L16+          GAGAAACAAATGTTTAAACGTGCGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
                      ____________________________________________________________
consensus             GAGAAACAAATGTTTAAACGTGCGAATGAGAAGCAGGCGACCGAAAGAGAGGCATATCTT
 
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rJMFF043M05+          TGGTCTGTTGCTGACATGTGACCGA--AAGAGAGGCATATCTACCGTAATTTTTCAGGGG
rJMFF035H18+          TGGTCTGTTGCTGACATGTGAGGCATCACTGTTACGCAATGTACAGTCATTTTTCA--GG
rJMFF020L16+          TGGTCTGTTGCTGACATGTGACCGA--AAGAGAGGCATATCTACCGTAATTTTTCAGGGG
                      ____________________________________________________________
consensus             TGGTCTGTTGCTGACATGTGACCGA--AAGAGAGGCATATCTACCGTAATTTTTCAGGGG
 
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rJMFF043M05+          GCAACGGATTGCACAACTGATTTACTGACTTAGTTCTACCTGTGTATTAACAGTGTATTA
rJMFF035H18+          GCAACGGATTGCACAACTGATTTACTCATTTAGTTCTACCTGTGTATTAACAGTGTATGA
rJMFF020L16+          GCAACGGATTGCACAACTGATTTACTGACTTAGTTCTACCTGTGTATTAACAGTGTATTA
                      ____________________________________________________________
consensus             GCAACGGATTGCACAACTGATTTACTGACTTAGTTCTACCTGTGTATTAACAGTGTATTA
 
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rJMFF043M05+          TGGTTATATACTTATTATTATTGAACATTTGGCTTAAACAAAGGTGTACATATTCAAAGT
rJMFF035H18+          TGGTTATATAC---TTATTATTGAACATTTGGCTTAAACAAAGGTGTTCATATTCAAAGT
rJMFF020L16+          TGGTTATATACTTATTATTATTGAACATTTGGCTTAAACAAAGGTGTACATATTCAAAGT
                      ____________________________________________________________
consensus             TGGTTATATACTTATTATTATTGAACATTTGGCTTAAACAAAGGTGTACATATTCAAAGT
 
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rJMFF043M05+          GGGGTTGGGAATGGGG                                            
rJMFF035H18+          GGGGTTGGGAATGGGG                                            
rJMFF020L16+          GGGGTTGGGAATGGGGATGTGTTAAAGCTTTGGTATCTTTCCGCCGACGCCATTATCGGC
                      ____________________________________________________________
consensus             GGGGTTGGGAATGGGGATGTGTTAAAGCTTTGGTATCTTTCCGCCGACGCCATTATCGGC
 
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rJMCP019F12-              ACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
rJMFF020L16+          AGGGACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
JMCP002B02-               ACGGCCCTGCTCGGCCCCtctGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
JMCP003B12-               ACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
                      ____________________________________________________________
consensus             AGGGACGGCCCTGCTCGGCCCCAGAGATCCTCCTTTCCTCTGTTTTCTTTTCACTTTTTT
 
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rJMCP019F12-          AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGC             
rJMFF020L16+          AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAA           
JMCP002B02-           AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAATGATTGTTT  
JMCP003B12-           AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAATGATTGTTTTG
                      ____________________________________________________________
consensus             AGTATGTTATATGGAAGTTTATTTTTATAAATTATAATCCATACCGCAATGATTGTTTTG