Contig 003023:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
JMCP002H10+                       TAAAAATTTTATGTTTTTAGGTATAAAATTTTATACATTTGAAACATA
                      ____________________________________________________________
consensus                         TAAAAATTTTATGTTTTTAGGTATAAAATTTTATACATTTGAAACATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          ATTTTTTTTAAtctgaattgtagtagcTTTTcccCTAGGACGCAGTcgtgggacGacgtg
JMCP002H10+           ATTTTTTTTAAAGACTTAACAagtagcTTTTGGcgaAGGACGCAGTGCACCCTGGTGgtg
                      ____________________________________________________________
consensus             ATTTTTTTTAAAGACTTAACATCATCGTTTTGGGCTAGGACGCAGTGCACCCTGGTGCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          GATATAATTTGCCCCTGGCGAACAAAGTTGAGGAAAAAAAAAAGGCTACTTGGGCCTGAG
JMCP002H10+           GATATAATTTGCCCCTGGCGAACAAAGTTGAGGAAAAAAAAAAGGCTACTTGGGCCTGAG
                      ____________________________________________________________
consensus             GATATAATTTGCCCCTGGCGAACAAAGTTGAGGAAAAAAAAAAGGCTACTTGGGCCTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          TGTGACGAGCCAAGTCCGCAACAATGCCCAATAGGCAGTGTTAAGACCCAAAACAATGAC
JMCP002H10+           TGTGACGAGCCAAGTCCGCAACAATGCCCAATAGGCAGTGTTAAGACCCAAAACAATGAC
                      ____________________________________________________________
consensus             TGTGACGAGCCAAGTCCGCAACAATGCCCAATAGGCAGTGTTAAGACCCAAAACAATGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          GTTGGTCCAAAGTAAAGGTTCATCTCAAATCACCAAAGTTTGAAGCTTGACAGCACGTGC
JMCP002H10+           GTTGGTCCAAAGTAAAGGTTCATCTCAAATCACCAAAGTTTGAAGCTTGACAGCACGTGC
                      ____________________________________________________________
consensus             GTTGGTCCAAAGTAAAGGTTCATCTCAAATCACCAAAGTTTGAAGCTTGACAGCACGTGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          GAGAAGACAAGTCCTACAGGCTACAGCGCTACAAAGCTTTTCCAGCATATATACACAACT
JMCP002H10+           GAGAAGACAAGTCCTACAGGCTACAGCGCTACAAAGCTTTTCCAGCATATATACACAACT
                      ____________________________________________________________
consensus             GAGAAGACAAGTCCTACAGGCTACAGCGCTACAAAGCTTTTCCAGCATATATACACAACT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          GCATGTACAAATATTCCCCGGCCCCCAAAAAATAAAAACTCATCTTCGATCTTTGTATTG
JMCP002H10+           GCATGTACAAATATTCCCCGGCCCCCAAAAAATAAAAACTCAagaagcATCTCTGTATTG
                      ____________________________________________________________
consensus             GCATGTACAAATATTCCCCGGCCCCCAAAAAATAAAAACTCATCTTCGATCTTTGTATTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          GgCTGCTATGTCGTCTTCTCTAACTTTTATGGCTTTATATAGTAAATTATTATAATGTGT
JMCP002H10+           GCCTGCTATGTCGTCTTCaCTAACTTTTATGGCTTTATATAGTAAATTATTATAATGTGT
                      ____________________________________________________________
consensus             GCCTGCTATGTCGTCTTCTCTAACTTTTATGGCTTTATATAGTAAATTATTATAATGTGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          ATATCTTTCACAGTTTCACACTTTCACCTCTGGATCTGAAATAAAAAAACGTGCAAACTG
JMCP002H10+           ATATCTTTCACAGTTTCACACTTTCACCTCTGGATCTGAAATAAAAAAACGTGCAAACTG
                      ____________________________________________________________
consensus             ATATCTTTCACAGTTTCACACTTTCACCTCTGGATCTGAAATAAAAAAACGTGCAAACTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMCP002B07+          TGACCGACCGACAAGTCCTTTGTTTCCTTCCAACGTTGTTAACATAATTATTGGTCACTG
JMCP002H10+           TGACCGACCGACAAGTCCTTTGTTTCCTTCCAACGTTGTTAACATAATTATTGGTCACTG
                      ____________________________________________________________
consensus             TGACCGACCGACAAGTCCTTTGTTTCCTTCCAACGTTGTTAACATAATTATTGGTCACTG