Contig 003021:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF019H02Sequence254013331 (2)716003021 (2)ref|XP_007145646.1|3e-94hypothetical protein PHAVU_007G256500g [Phaseolus vulgaris] gb|ESW17640.1| hypot
JMSF052M06Sequence646013331 (2)ref|XP_006355151.1|3e-55PREDICTED: vacuolar amino acid transporter 1-like [Solanum tuberosum]925003021 (2)ref|XP_009793352.1|1e-103PREDICTED: vacuolar amino acid transporter 1 isoform X6 [Nicotiana sylvestris]

Alignment

This contig is upended


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rJMSF052M06+                                             TTCAGCATGTGGAGTTGTTGCAACT
                      ____________________________________________________________
consensus                                                TTCAGCATGTGGAGTTGTTGCAACT
 
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rJMSF052M06+          ATAGTCATTGTGGNTTTCTGTAGCTTTACTCACTATAGTAGATGGAGTTGGATCACCCCA
                      ____________________________________________________________
consensus             ATAGTCATTGTGGNTTTCTGTAGCTTTACTCACTATAGTAGATGGAGTTGGATCACCCCA
 
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rJMSF019H02+                                            TTTTCCATTGGTGTATATGGATTTTG
rJMSF052M06+          GACAGGTCAATTGGTAAATTGGAGTGGTATTCCTTTTTCCATTGGTGTATATGGATTTTG
                      ____________________________________________________________
consensus             GACAGGTCAATTGGTAAATTGGAGTGGTATTCCTTTTTCCATTGGTGTATATGGATTTTG
 
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rJMSF019H02+          TTATGCTGGCCACTCTGTCTTTCCCAATATTTACCAATCAATGGCTGATAAAAAGAAATT
rJMSF052M06+          TTATGCTGGCCACTCTGTCTTTCCCAATATTTACCAATCAATGGCTGATAAAAAGAAATT
                      ____________________________________________________________
consensus             TTATGCTGGCCACTCTGTCTTTCCCAATATTTACCAATCAATGGCTGATAAAAAGAAATT
 
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rJMSF019H02+          TACAAAGGCAATGACTATATGCTTTATTTTGTGTGTTGCAATGTATGGGAGTGTTGCAGT
rJMSF052M06+          TACAAAGGCAATGACTATATGCTTTATTTTGTGTGTTGCAATGTATGGGAGTGTTGCAGT
                      ____________________________________________________________
consensus             TACAAAGGCAATGACTATATGCTTTATTTTGTGTGTTGCAATGTATGGGAGTGTTGCAGT
 
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rJMSF019H02+          TATGGGATATCTCCTGTTTGGTGATAATACATTGTCTCAGATCACTCTAAACATGCCACG
rJMSF052M06+          TATGGGATATCTCCTGTTTGGTGATAATACATTGTCTCAGATCACTCTAAACATGCCACG
                      ____________________________________________________________
consensus             TATGGGATATCTCCTGTTTGGTGATAATACATTGTCTCAGATCACTCTAAACATGCCACG
 
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rJMSF019H02+          TGATTCTATTGCTTCAAAAATTGCAGTGTGGACAACAGTTATCAACCCTTTCACAAAATA
rJMSF052M06+          TGATTCTATTGCTTCAAAAATTGCAGTGTGGACAACAGTTATCAACCCTTTCACAAAATA
                      ____________________________________________________________
consensus             TGATTCTATTGCTTCAAAAATTGCAGTGTGGACAACAGTTATCAACCCTTTCACAAAATA
 
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rJMSF019H02+          TGCCCTGATGATAAATCCACTGGCTAGAGCCGTGGAGGAGTTGCTGCCTGAGAGAATCTC
rJMSF052M06+          TGCCCTGATGATAAATCCACTGGCTAGAGCCGTGGAGGAGTTGCTGCCTGAGAGAATCTC
                      ____________________________________________________________
consensus             TGCCCTGATGATAAATCCACTGGCTAGAGCCGTGGAGGAGTTGCTGCCTGAGAGAATCTC
 
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rJMSF019H02+          CAGTAGTTTCTGGTGTTTTGTTCTGCTAAGGACAGCACTTGTAGCTTCAACCGTTTGTGT
rJMSF052M06+          CAGTAGTTTCTGGTGTTTTGTTCTGCTAAGGACAGCACTTGTAGCTTCAACCGTTTGTGT
                      ____________________________________________________________
consensus             CAGTAGTTTCTGGTGTTTTGTTCTGCTAAGGACAGCACTTGTAGCTTCAACCGTTTGTGT
 
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rJMSF019H02+          CGCATTCCTTCTTCCTTTCTTCGGCCTTGTGATGGCTTTAATCGGGTCTCTCCTCAGTAT
rJMSF052M06+          CGCATTCCTTCTTCCTTTCTTCGGCCTTGTGATGGCTTTAATCGGGTCTCTCCTCAGTAT
                      ____________________________________________________________
consensus             CGCATTCCTTCTTCCTTTCTTCGGCCTTGTGATGGCTTTAATCGGGTCTCTCCTCAGTAT
 
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rJMSF019H02+          ACTACTGGCGGTTATTATGCCAACATTGTGTTTTCTGAAGATCCTGGATAAGAAAGTGAC
rJMSF052M06+          ACTACTGGCGGTTATTATGCCAACATTGTGTTTTCTGAAGATCCTGGATAAGAAAGTGAC
                      ____________________________________________________________
consensus             ACTACTGGCGGTTATTATGCCAACATTGTGTTTTCTGAAGATCCTGGATAAGAAAGTGAC
 
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rJMSF019H02+          AACCGTACAGAGGGCTGCTAGCATCACTGTTGTGGTTTTGGGTATCATAAGTGCAGCTCT
rJMSF052M06+          AACCGTACAGAGGGCTGCTAGCATCACTGTTGTGGTTTTGGGTATCATAAGTGCAGCTCT
                      ____________________________________________________________
consensus             AACCGTACAGAGGGCTGCTAGCATCACTGTTGTGGTTTTGGGTATCATAAGTGCAGCTCT
 
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rJMSF019H02+          GGGGACATACTCTTCAGTATCGAAAATCGCAAAGCAATACTGAAAGCCAGGACAAAGAAC
rJMSF052M06+          GGGGACATACTCTTCAGTATCGAAAATCGCAAAGCAATACTGAAAGCCAGGACAAAGAAC
                      ____________________________________________________________
consensus             GGGGACATACTCTTCAGTATCGAAAATCGCAAAGCAATACTGAAAGCCAGGACAAAGAAC
 
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rJMSF019H02+          AATTTCTTCTGCTCTCTTCAGTGTTTTAGCTGATATTGACGTTTTCTGTTTTTCCTAGAA
rJMSF052M06+          AATTTCTTCTGCTCTCTTCAGTGTTTTAGCTGATATTGACGTTTTCTGTTTTTCCTAGAA
                      ____________________________________________________________
consensus             AATTTCTTCTGCTCTCTTCAGTGTTTTAGCTGATATTGACGTTTTCTGTTTTTCCTAGAA
 
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rJMSF019H02+          TAACTGTCATCGAC                                              
rJMSF052M06+          TAACTGTCATCGACTGTCTTAGCGTACGTGAACGGTATGAAGGACAAAATTATTCTTGCT
                      ____________________________________________________________
consensus             TAACTGTCATCGACTGTCTTAGCGTACGTGAACGGTATGAAGGACAAAATTATTCTTGCT
 
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rJMSF052M06+          TTTGCTTGAGCAGATGGTTACTACTTTCTATTGTTGTTGTAGTAGTAGTAGTGCTACTAC
                      ____________________________________________________________
consensus             TTTGCTTGAGCAGATGGTTACTACTTTCTATTGTTGTTGTAGTAGTAGTAGTGCTACTAC