Contig 003020:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017C03Sequence320022087ref|XP_009591418.1|113PREDICTED: uncharacterized protein LOC104088449 [Nicotiana tomentosiformis]724003020 (2)ref|XP_006381575.1|2e-50hypothetical protein POPTR_0006s14020g [Populus trichocarpa] gb|ERP59372.1| hypo
JMSF052L12Sequence561003020 (2)ref|XP_009625179.1|2e-33PREDICTED: RRP12-like protein [Nicotiana tomentosiformis]

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+                                              TTTGATCAATTAGACGATGAGCCA
                      ____________________________________________________________
consensus                                                 TTTGATCAATTAGACGATGAGCCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          CTCGACTTACTTGACCAACAGAAGACGAGGTTAGCTCTTAGATCCTCTGGAAATAACAAG
                      ____________________________________________________________
consensus             CTCGACTTACTTGACCAACAGAAGACGAGGTTAGCTCTTAGATCCTCTGGAAATAACAAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          CGCAAGGCAGAATCTGACGATGAGATGGAGATAGATGCCGAGGGGCATCTTATCATTCGT
                      ____________________________________________________________
consensus             CGCAAGGCAGAATCTGACGATGAGATGGAGATAGATGCCGAGGGGCATCTTATCATTCGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          GAGGAAGACGGGAAGCCAAAAAGAAAGAAGTCACTCGACAGCGAGGCAGATGTAAGAAGT
rJMSF052L12+                                                 AGCGAGGCAGATGTAAGAAGT
                      ____________________________________________________________
consensus             GAGGAAGACGGGAAGCCAAAAAGAAAGAAGTCACTCGACAGCGAGGCAGATGTAAGAAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          GAAACTGGCAGTCGCTCGTCAATGAACTCAAGAAAAACCCAAACCCAAACCCAGAAACGC
rJMSF052L12+          GAAACTGGCAGTCNCTCGTCAATGANCTCAAGAAAAANCCAANCCCNNACCCAGAAACGC
                      ____________________________________________________________
consensus             GAAACTGGCAGTCGCTCGTCAATGAACTCAAGAAAAACCCAAACCCAAACCCAGAAACGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          AGGAAAACATCAGATGCTGGATGGGCTTACACAGGAAACGAATACTCAAGCAAGAAAGCA
rJMSF052L12+          AGGAAAACATCAGATGCTGGATGGGCTTACACANGAANCGAATACTCAAGCAAGAAAGCA
                      ____________________________________________________________
consensus             AGGAAAACATCAGATGCTGGATGGGCTTACACAGGAAACGAATACTCAAGCAAGAAAGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          AGTGGCGACGTGAAGCGCAAGGGCAAACTCGAGCCATATGCCTACTGGCCCCTTGACCGC
rJMSF052L12+          AGTGGCGACGTGAAGCGCAAGGGCAAACTCGAGCCATATGCCTANTGGCCCCTTGGCCGC
                      ____________________________________________________________
consensus             AGTGGCGACGTGAAGCGCAAGGGCAAACTCGAGCCATATGCCTACTGGCCCCTTGGCCGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          AAGATGATGAGCCGCAGGCCGGAACAACGCGCTGCTGCAAGAAAAGGCATGTCGAGTGTG
rJMSF052L12+          AAGATGATGANCNGCAGGCCGGAACAACGCGCTGCTGCAAGAAAAGGCATGTCGAGTGTG
                      ____________________________________________________________
consensus             AAGATGATGAGCCGCAGGCCGGAACAACGCGCTGCTGCAAGAAAAGGCATGTCGAGTGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          GTGAAGATGACGAAGAAGTTGGAGGGGAAGAGTGTTGCTAACGCCCTTAAAATGAAAGGA
rJMSF052L12+          GTGAAGATGACGAAGAAGTTGGAGGGGAAGAGTGTTGCTANCNCCCTTAAAATGAAAGGA
                      ____________________________________________________________
consensus             GTGAAGATGACGAAGAAGTTGGAGGGGAAGAGTGTTGCTAACGCCCTTAAAATGAAAGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          GCAAAAGGGAGCAAGAAGAGGGGCACAAGCAAAAGTTAGATGAAGTAGATGCTGGTCCAA
rJMSF052L12+          GCAAAAGGGAGCAAGAAGAGGGGCNCAAGCAANAGTTAGATGAAGTAGATGNTGGTCCAA
                      ____________________________________________________________
consensus             GCAAAAGGGAGCAAGAAGAGGGGCACAAGCAAAAGTTAGATGAAGTAGATGCTGGTCCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          GTATGAAGTTGAAGTTGGGCTGTTAGTTGCTAATTATACTTTGCCTCCATCAAGGTCATT
rJMSF052L12+          GTATGAAGTTGAAGTTNGGCTGTTTGTTGCTAATTATACTTTGCCTCCATCAAGGTCANT
                      ____________________________________________________________
consensus             GTATGAAGTTGAAGTTGGGCTGTTTGTTGCTAATTATACTTTGCCTCCATCAAGGTCATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          ACTTGCCA-ACAATTTTGTTTGCTTACATTTATCCTCAACTCCTTGTAAGTTTGGTTTTA
rJMSF052L12+          ACTTGCCATACAATTTTGTTTGCTTACATTTATCCTCNACTCCTTGTAAGTTTGGTTTTA
                      ____________________________________________________________
consensus             ACTTGCCATACAATTTTGTTTGCTTACATTTATCCTCAACTCCTTGTAAGTTTGGTTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF017C03+          TTTCATCAAATGCGATTGCATGAAATTGGTAGTGTGTATAC                   
rJMSF052L12+          TTTCATCAAATNCGATNGCATGAAATTGGNAGTGTGTATACTTGGTAGTTNCAATAGTTT
                      ____________________________________________________________
consensus             TTTCATCAAATGCGATTGCATGAAATTGGTAGTGTGTATACTTGGTAGTTNCAATAGTTT