| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF001D03 | Sequence | 593 | 003019 (9) | gb|ADV57637.1| | 6e-40 | copper binding protein 2 [Gossypium hirsutum] | 747 | 003019 (9) | gb|ADV57637.1| | 2e-39 | copper binding protein 2 [Gossypium hirsutum] |
| JMFF002G20 | Sequence | 656 | 003019 (9) | gb|ADV57637.1| | 6e-40 | copper binding protein 2 [Gossypium hirsutum] | |||||
| JMFF019J05 | Sequence | 597 | 003019 (9) | gb|ADV57637.1| | 6e-40 | copper binding protein 2 [Gossypium hirsutum] | 119 | 016957 | |||
| JMFF050P14 | Sequence | 532 | 003019 (9) | ref|XP_009617386.1| | 2e-38 | PREDICTED: mavicyanin-like isoform X1 [Nicotiana tomentosiformis] | 365 | 003019 (9) | |||
| JMFN028L20 | Sequence | 586 | 003019 (9) | gb|KHG23308.1| | 2e-39 | hypothetical protein F383_28880 [Gossypium arboreum] | |||||
| JMSF052G15 | Sequence | 723 | 003019 (9) | gb|ADV57637.1| | 2e-39 | copper binding protein 2 [Gossypium hirsutum] | 753 | 003019 (9) | gb|ADV57637.1| | 2e-39 | copper binding protein 2 [Gossypium hirsutum] |
This contig is upended
. : . : . : . : . : . :
rJMFF050P14- ATGATGGGAATATTCCATTTTAAAAAGATGACCCAAATTAAAAAGGGAAC
rJMFF001D03- AGAATGATGGTAATATTCAATTTTAAAAAGATGACACAAATTAAAAAGGGAAG
rJMSF052G15- AAAAGATGACACAAATTAAAAAGGGAAG
____________________________________________________________
consensus AGAATGATGGTAATATTCCATTTTAAAAAGATGACACAAATTAAAAAGGGAAG
. : . : . : . : . : . :
rJMFF050P14- TATAACGGCTAAAATGAAACAGAAAGAATATTTTGATTTATGCATACAACACTAAATATG
rJMFF001D03- TAAAACGGATAAAATGAGACAGAGAGAATATTATGATTTATGCATACAACACTAAATATG
JMSF052G15+ AACGGATAAAATGAGACAGAGAGAATATTATGATTTATGCATACAACACTAAATATG
rJMFF002G20- ATG
rJMSF052G15- TAAAACGGATAAAATGAGACAGAGAGAATATTATGATTTATGCATACAACACTAAATATG
____________________________________________________________
consensus TAAAACGGATAAAATGAGACAGAGAGAATATTATGATTTATGCATACAACACTAAATATG
. : . : . : . : . : . :
rJMFF050P14- AATGATTGATTAAAGAAACCTAGGTAAAGGTAAAAGAGGAAATAACAAAACGGTGGTGAG
rJMFF001D03- AATGATTGATTAGAGAAACATAGGTAAAGGTAAAAGAGGAAATAGCAAAACGGTGGTGAG
JMSF052G15+ AATGATTGATTAGAGAAACATAGGTAAAGGTAAAAGAGGAAATAGCAAAACGGTGGTGAG
rJMFF002G20- AATGATTGATTAGAGAAACATAGGTAAAGGTAAAAGAGGAAATAGCAAAACGGTGGTGAG
JMFN028L20+ GAAATAGCAAAACGGTGGTGAG
rJMSF052G15- AATGATTGATTAGAGAAACATAGGTAAAGGTAAAAGAGGAAATAGCAAAACGGTGGTGAG
____________________________________________________________
consensus AATGATTGATTAGAGAAACATAGGTAAAGGTAAAAGAGGAAATAGCAAAACGGTGGTGAG
. : . : . : . : . : . :
rJMFF050P14- TCCACTACCGAGGCGTGGGGAACCAAAAAGTGCAATGGGCCCATCTGGGGGAATGACCAA
rJMFF001D03- TCCAGTAGCGAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCTGCGGGGAGGACCAA
JMSF052G15+ TCCAGTAGCGAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCTGCGGGGAGGACCAA
rJMFF002G20- TCCAGTAGCGAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCTGCGGGGAGGACCAA
JMFF019J05+ TCCAGTAGCGAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCTGCGGGGAGGACCAA
JMFF001D03+ TCCAGTAGCGAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCTGCGGGGAGGACCAA
JMFN028L20+ TCCAGTAGCAAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCT-CGGGGAGGACCAA
rJMSF052G15- TCCAGTAGCGAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCTGCGGGGAGGACCAA
____________________________________________________________
consensus TCCAGTAGCGAGGCGTGTGGAAGCAGAAGGTGCAGTGGGCGCATCTGCGGGGAGGACCAA
. : . : . : . : . : . :
rJMFF050P14- TGGCCAAATCCCATTTGCTTTGGGTGAAGATTGGACCGTGAGGGGTAATTTGAGGCCATT
rJMFF001D03- TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
JMSF052G15+ TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
rJMFF002G20- TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
JMFF019J05+ TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
JMFF001D03+ TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
JMFN028L20+ TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
JMFF050P14+ GGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
rJMSF052G15- TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
____________________________________________________________
consensus TGGCCAAATCGCATTTGTTTTGGGTGAAGATTGGACAGTGAGGGGTAATTTGAGGCCATT
. : . : . : . : . : . :
rJMFF050P14- TTT
rJMFF001D03- TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
JMSF052G15+ TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
rJMFF002G20- TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
JMFF019J05+ TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
JMFF001D03+ TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
JMFN028L20+ TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
JMFF050P14+ TTGCGAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
rJMSF052G15- TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
____________________________________________________________
consensus TTTGCAGCTGTGTAGGTTTCCACTCACGAAGTACCGAACTCCCTCTCCGTCGAGGGGGAT
. : . : . : . : . : . :
rJMFF001D03- TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
JMSF052G15+ TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
rJMFF002G20- TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
JMFF019J05+ TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
JMFF001D03+ TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
JMFN028L20+ TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
JMFF050P14+ TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
rJMSF052G15- TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
____________________________________________________________
consensus TTTGTCTATGCCGTTAGTGTAGATTCTGATGGGGTTGGAGAGATCGCAGGACATGTATTC
. : . : . : . : . : . :
rJMFF001D03- TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
JMSF052G15+ TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
rJMFF002G20- TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
JMFF019J05+ TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
JMFF001D03+ TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
JMFN028L20+ TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
JMFF050P14+ TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
rJMSF052G15- TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
____________________________________________________________
consensus TTCCCTACTTCCTAGCTCCGCGATACTCTCTTGTGCGGCCGAGTATGTGAACCAGATAGT
. : . : . : . : . : . :
rJMFF001D03- GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
JMSF052G15+ GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
rJMFF002G20- GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
JMFF019J05+ GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
JMFF001D03+ GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
JMFN028L20+ GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
JMFF050P14+ GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
rJMSF052G15- GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
____________________________________________________________
consensus GTCACCAACATTGAAGATTCTGGCGGCGGACCAGGAAGCAATATCATTCGACACTTCCCA
. : . : . : . : . : . :
rJMFF001D03- TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
JMSF052G15+ TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
rJMFF002G20- TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACTGCCGCCGCCGCCAC
JMFF019J05+ TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
JMFF001D03+ TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
JMFN028L20+ TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
JMFF050P14+ TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
rJMSF052G15- TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
____________________________________________________________
consensus TCCTTTGTCCCCTCCCACCACATGATGTTCTTGTCCTCCCACAACCGCCGCCGCCGCCAC
. : . : . : . : . : . :
rJMFF001D03- AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
JMSF052G15+ AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
rJMFF002G20- AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
JMFF019J05+ AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
JMFF001D03+ AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
JMFN028L20+ AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
JMFF050P14+ AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
rJMSF052G15- AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
____________________________________________________________
consensus AAGAACCACCGCCGTCACAACACTCCACTGCCGCCGCGTCCTCATCTCGTCGATCTCTGC
. : . : . : . : . : . :
rJMFF001D03- TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGCGGAGCTAGCATGCAACTA
JMSF052G15+ TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
rJMFF002G20- TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
JMFF019J05+ TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
JMFF001D03+ TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
JMFN028L20+ TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
JMFF050P14+ TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
rJMSF052G15- TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
____________________________________________________________
consensus TATCTGTTTCACAGTATGTATGTTCAGTGATTAATACTCAGC-GAGCTAGCATGCAACTA
. : . : . : . : . : . :
rJMFF001D03- ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGG
JMSF052G15+ ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGGGTGGGGATAGAGTGGGCGTTA
rJMFF002G20- ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGGGTGGGGATAGAGTGGGCGTT
JMFF019J05+ ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGGGTGGGGATAGAGTGGGCGTTA
JMFF001D03+ ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGGGTGGGGATAGAGTGGGCGTT
JMFN028L20+ ATTAAAGGCAAACTTTTTCCTTTTTC
JMFF050P14+ ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGGGTGGGGATAGAGTGGGCGTTA
rJMSF052G15- ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGGGTGGGGATAGAGTGGGCGTTAGACC
____________________________________________________________
consensus ATT-AAGGCAAACTTTTTCCTTTTTCTTGTTTGGGGTGGGGATAGAGTGGGCGTTAGACC