Contig 003016:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF022I06Sequence481003016 (3)ref|XP_009787473.1|4e-50PREDICTED: F-box protein SKIP16 [Nicotiana sylvestris]720012420 (5)ref|XP_011091637.1|7e-74PREDICTED: F-box protein SKIP16 [Sesamum indicum]
JMFF043I12Sequence633003016 (3)ref|XP_009787473.1|8e-74PREDICTED: F-box protein SKIP16 [Nicotiana sylvestris]649012420 (5)ref|XP_011091637.1|2e-47PREDICTED: F-box protein SKIP16 [Sesamum indicum]
JMSF052B18Sequence549003016 (3)emb|CDP03478.1|3e-24unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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JMFF043I12+                                    TCAAGCCCAACAAGTTCATAGGTTCATTNTCAGTG
                      ____________________________________________________________
consensus                                      TCAAGCCCAACAAGTTCATAGGTTCATTNTCAGTG
 
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JMFF043I12+           AGCTTCCCAGTGAACTCATCATCACTCAGTTCTTGACCATCACAAAACCGGTATAGAACC
                      ____________________________________________________________
consensus             AGCTTCCCAGTGAACTCATCATCACTCAGTTCTTGACCATCACAAAACCGGTATAGAACC
 
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JMFF043I12+           CTAGTGGGAAGAGGCAATTTTACTTTTAAACACTCCTCCAAGTAATTTATTTGATCCTCG
                      ____________________________________________________________
consensus             CTAGTGGGAAGAGGCAATTTTACTTTTAAACACTCCTCCAAGTAATTTATTTGATCCTCG
 
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JMFF043I12+           GAAGCACCTTTGCGTAAGGTAGGCAAAACCCCAGGGAAGTTAATCTCCATCCAGCTTCTA
                      ____________________________________________________________
consensus             GAAGCACCTTTGCGTAAGGTAGGCAAAACCCCAGGGAAGTTAATCTCCATCCAGCTTCTA
 
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JMFF043I12+           ATTCTGCTCCAACATCTTTTGGCTCTTATAACCAAGGTCCATGGATACATATTGAATGCT
                      ____________________________________________________________
consensus             ATTCTGCTCCAACATCTTTTGGCTCTTATAACCAAGGTCCATGGATACATATTGAATGCT
 
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JMFF043I12+           TCCCTCCATGTTTGATAAGATACCCTGAAAGAGGGAGTGGGGTTTCCCCAAGGGTCCTGA
JMFF022I06+                               TACCCTGAAAGAGGGAGTGGGGTTTCCCCAAGGGTCCTGA
rJMSF052B18-                              TACCCTGAAAGAGGGAGTGGGGTTTCCCCAAGGGTCCTGA
                      ____________________________________________________________
consensus             TCCCTCCATGTTTGATAAGATACCCTGAAAGAGGGAGTGGGGTTTCCCCAAGGGTCCTGA
 
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JMFF043I12+           GGAGAAGACAAGCCGAGTTCATCGGCGCAGAATTTGGACCAGAGGGAATCGTCGTCGGAT
JMFF022I06+           GGAGAAGACAAGCCGAGTTCATCGGCGCAGAATTTGGACCAGAGGGAATCGTCGTCGGAT
rJMSF052B18-          GGAGAAGACAAGCCGAGTTCATCGGCGCAGAATTTGGACCAGAGGGAATCGTCGTCGGAT
                      ____________________________________________________________
consensus             GGAGAAGACAAGCCGAGTTCATCGGCGCAGAATTTGGACCAGAGGGAATCGTCGTCGGAT
 
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JMFF043I12+           ACCCAATCCCTAAATCTCCGGCTGATGCAGGCCGTAGCGGCTACGTCTTCCGGCATGAGT
JMFF022I06+           ACCCAATCCCTAAATCTCCGGCTGATGCAGGCCGTAGCGGCTACGTCTTCCGGCATGAGT
rJMSF052B18-          ACCCAATCCCTAAATCTCCGGCTGATGCAGGCCGTAGCGGCTACGTCTTCCGGCATGAGT
                      ____________________________________________________________
consensus             ACCCAATCCCTAAATCTCCGGCTGATGCAGGCCGTAGCGGCTACGTCTTCCGGCATGAGT
 
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JMFF043I12+           TTCGATAGAATGATGTGAATCGCAAGCCCACCCACGCTCTCCAATCCCATCATTTCTTCT
JMFF022I06+           TTCGATAGAATGATGTGAATCGCAAGCCCACCCACGCTCTCCAATCCCATCATTTCTTCT
rJMSF052B18-          TTCGATAGAATGATGTGAATCGCAAGCCCACCCACGCTCTCCAATCCCATCATTTCTTCT
                      ____________________________________________________________
consensus             TTCGATAGAATGATGTGAATCGCAAGCCCACCCACGCTCTCCAATCCCATCATTTCTTCT
 
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JMFF043I12+           TCTTCTTCTTCTTCCTCTATCGCCGACGGAAAACAGGAAGAGTGATGATCAGGTAAGTGA
JMFF022I06+           TCTTCTTCTTCTTCCTCTATCGCCGACGGAAAACAGGAAGAGTGATGATCAGGTAAGTGA
rJMSF052B18-          TCTTCTTCTTCTTCCTCTATCGCCGACGGAAAACAGGAAGAGTGATGATCAGGTAAGTGA
                      ____________________________________________________________
consensus             TCTTCTTCTTCTTCCTCTATCGCCGACGGAAAACAGGAAGAGTGATGATCAGGTAAGTGA
 
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JMFF043I12+           AGACGACTGTTGAAGAGAGCGTCTGAAAAAGGATCGTTATTAAGAAATTCAGCTAATC  
JMFF022I06+           AGACGACTGTTGAAGAGAGCGTCTGAAAAAGGATCGTTATTAAGAAATTCAGCTAATC  
rJMSF052B18-          AGACGACTGTTGAAGAGAGCGTCTGAAAAAGGATCGTTATTAAGAAATTCAGCTAATCCA
                      ____________________________________________________________
consensus             AGACGACTGTTGAAGAGAGCGTCTGAAAAAGGATCGTTATTAAGAAATTCAGCTAATCCA