Contig 003012:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024D18Sequence603003681 (4)ref|XP_006339025.1|6e-11PREDICTED: protein kinase APK1A, chloroplastic-like [Solanum tuberosum]720003012 (3)emb|CDP06608.1|1e-93unnamed protein product [Coffea canephora]
JMSF037K24Sequence171003681 (4)589003012 (3)ref|XP_011094865.1|2e-60PREDICTED: protein kinase APK1A, chloroplastic [Sesamum indicum]
JMSF050P08Sequence269003681 (4)476003012 (3)emb|CDP06608.1|8e-29unnamed protein product [Coffea canephora]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024D18+ TG
                      ____________________________________________________________
consensus TG
 
. : . : . : . : . : . :
rJMSF024D18+ ATTTTGGATTGGCTAGAGATGGGCCAACAGGGGATAAGAGCCATGTCTCGACAAGGGTTA
                      ____________________________________________________________
consensus ATTTTGGATTGGCTAGAGATGGGCCAACAGGGGATAAGAGCCATGTCTCGACAAGGGTTA
 
. : . : . : . : . : . :
rJMSF037K24+ TATCAACAGGTCATCTTACTGCAAAGA
rJMSF024D18+ TGGGGACTTATGGATATGCTGCTCCCGAGTATCTATCAACAGGTCATCTTACTGCAAAGA
                      ____________________________________________________________
consensus TGGGGACTTATGGATATGCTGCTCCCGAGTATCTATCAACAGGTCATCTTACTGCAAAGA
 
. : . : . : . : . : . :
rJMSF037K24+ GTGANGTATACAGCTTCGGAGTCGTTCTCTTAGAAATTTTATCCGGTAAAAAAGCAATAG
rJMSF024D18+ GTGACGTATACAGCTTCGGAGTCGTTCTCTTAGAAATTTTATCCGGTAAAAAAGCAATAG
                      ____________________________________________________________
consensus GTGACGTATACAGCTTCGGAGTCGTTCTCTTAGAAATTTTATCCGGTAAAAAAGCAATAG
 
. : . : . : . : . : . :
rJMSF037K24+ NCAAGAATCGGCCTTCTGGGGAACACAGTCTTGTGGAGTGGGCAAAACNTTATCTTACCA
rJMSF024D18+ ACAAGAATCGGCCTTCTGGGGAACACAGTCTTGTGGAGTGGGCAAAACCTTATCTTACCA
                      ____________________________________________________________
consensus ACAAGAATCGGCCTTCTGGGGAACACAGTCTTGTGGAGTGGGCAAAACCTTATCTTACCA
 
. : . : . : . : . : . :
rJMSF037K24+ ACAAACGCAGAATTTTCCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
rJMSF024D18+ ACAAACGCAGAATTTTCCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
rJMSF050P08+ ACGCAGAATTTTTCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
                      ____________________________________________________________
consensus ACAAACGCAGAATTTTCCGCGTCCTGGATCCCCGCCTCGAAGGCCAGTACTCACTGACCA
 
. : . : . : . : . : . :
rJMSF037K24+ AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCNTATGCATGGAACNGAAGTTGAGGC
rJMSF024D18+ AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCCTATGCATGGAACCGAAGTTGAGGC
rJMSF050P08+ AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCNTATGCATGGAACCGAAGTTGAGGC
                      ____________________________________________________________
consensus AAGCTATGAAGGCAGCTAACCTCGCACTCCAGTGCCTATGCATGGAACCGAAGTTGAGGC
 
. : . : . : . : . : . :
rJMSF037K24+ CAAACATGGANGACGTGGTCAAAACCTTAGAGCAACTACAGGAGGCAAAGGACTCAACGA
rJMSF024D18+ CAAACATGGATGACGTGGTCAAAACCTTAGAGCAACTACAGGAGGCAAAGGACTCAACGA
rJMSF050P08+ CAAACATGGATGACGTGGTCAAAACTTTAGAGCAANTACAGGAGGCAANGGANTCAANGA
                      ____________________________________________________________
consensus CAAACATGGATGACGTGGTCAAAACCTTAGAGCAACTACAGGAGGCAAAGGACTCAACGA
 
. : . : . : . : . : . :
rJMSF037K24+ CGGGTGATAAAAAAGAAAGGGACCTCACTCGAGACAGCCNCCCAAAGGGCCCGTGTAAGT
rJMSF024D18+ CGGGTGATAAAAAAGAAAGGAACCTCACTCGAGACAGCCGCCCAAAGGGCCCGTCTAAGT
rJMSF050P08+ CGGGTGATAAAAAAGAAAGGAACCTCACTCGAGACAGCCGCCCAAAGGGCCCGTCTAAGT
                      ____________________________________________________________
consensus CGGGTGATAAAAAAGAAAGGAACCTCACTCGAGACAGCCGCCCAAAGGGCCCGTCTAAGT
 
. : . : . : . : . : . :
rJMSF037K24+ CCTGCCGNGGCATTGCATCAGAGACGGCCNGAATGACCACGTACCCCCGACCCTCGTCCT
rJMSF024D18+ CCTGCCGCGGCACTGCATCAGAGACGGCCCGAATGACCACGTACCCCCGACCCTCGTCCT
rJMSF050P08+ CCTGCCGCGGCACTGCATCAGAGNCGGCCCGAATGACCACGTACCCCCGACCCTCGTCCT
                      ____________________________________________________________
consensus CCTGCCGCGGCACTGCATCAGAGACGGCCCGAATGACCACGTACCCCCGACCCTCGTCCT
 
. : . : . : . : . : . :
rJMSF037K24+ NTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
rJMSF024D18+ CTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
rJMSF050P08+ CTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
                      ____________________________________________________________
consensus CTCCTCTCTACGCATAACAGAAAAGAAGCGAGTGCCCGCTCGGGTTGCTAGGTTGCCGGC
 
. : . : . : . : . : . :
rJMSF037K24+ AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATNTACAGCAGTTAACCTTCCAATT
rJMSF024D18+ AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATGTACAGCAGTTAACCTTCCAATT
rJMSF050P08+ AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATGTACAGCAGTTAACCTTCCAATT
                      ____________________________________________________________
consensus AGTTCGTGACAATGCCTATTCGCTTAAAGAGATGTATGTACAGCAGTTAACCTTCCAATT
 
. : . : . : . : . : . :
rJMSF037K24+ TATGCATGTC
rJMSF024D18+ TATGCATGT-CATTGTGTTGCTAGTTTGTTACACGGCTAAGGTTAGTCACCAAGGCGGG
rJMSF050P08+ TATNCATGTCCATTGTGTTGCTAGTTTGTTACACGGCTAAGGTTAGTCAGCAAGGCGGGT
                      ____________________________________________________________
consensus TATGCATGTCCATTGTGTTGCTAGTTTGTTACACGGCTAAGGTTAGTCAGCAAGGCGGGT