clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN017D20 | Sequence | 499 | 003009 (5) | ref|XP_002262619.1| | 1e-31 | PREDICTED: ABC transporter G family member 11 [Vitis vinifera] emb|CBI26391.3| u | |||||
JMSF003N17 | Sequence | 288 | 001981 (9) | 666 | 003009 (5) | ref|XP_008245603.1| | 3e-95 | PREDICTED: ABC transporter G family member 11 [Prunus mume] | |||
JMSF030M11 | Sequence | 681 | 001981 (9) | ref|XP_009602146.1| | 7e-40 | PREDICTED: ABC transporter G family member 11 [Nicotiana tomentosiformis] | 769 | 003009 (5) | ref|XP_008245603.1| | 6e-97 | PREDICTED: ABC transporter G family member 11 [Prunus mume] |
JMSF036P18 | Sequence | 679 | 001981 (9) | ref|XP_009781344.1| | 1e-48 | PREDICTED: ABC transporter G family member 11 [Nicotiana sylvestris] | 715 | 003009 (5) | ref|XP_008245603.1| | 9e-108 | PREDICTED: ABC transporter G family member 11 [Prunus mume] |
JMSF049H10 | Sequence | 358 | 001981 (9) | 711 | 003009 (5) | ref|XP_008245603.1| | 8e-83 | PREDICTED: ABC transporter G family member 11 [Prunus mume] |
This contig is upended
. : . : . : . : . : . :
rJMSF036P18+ ACCCAGGCTTCATGCATTATCTATTCTTCGTGC
____________________________________________________________
consensus ACCCAGGCTTCATGCATTATCTATTCTTCGTGC
. : . : . : . : . : . :
rJMSF003N17+ CGTCACCGTGGTTGAGAGCCTCATGATGGCCATAGCCAGTGTCG
rJMSF036P18+ TGTGCTTATACGCAAGCGTCACCGTGGTTGAGAGCCTCATGATGGCCATAGCCAGTGTCG
rJMSF030M11+ ATACGCAAGCGTCACCGTGGTTGAGAGCCTCATGATGGCCATAGCCAGTGTCG
____________________________________________________________
consensus TGTGCTTATACGCAAGCGTCACCGTGGTTGAGAGCCTCATGATGGCCATAGCCAGTGTCG
. : . : . : . : . : . :
rJMSF003N17+ TTCCCAATTTCCTGATGGGCATCATCACAGGGGCAGGAATTCAGGGTATATTTATGCTAG
rJMSF036P18+ TTCCCAATTTCCTGATGGGCATCATCACAGGGGCAGGAATTCAGGGTATATTTATGCTAG
rJMSF030M11+ TTCCCAATTTCCTGATGGGCATCATCACAGGGGCAGGAATTCAGGGTATATTTATGCTAG
rJMSF049H10+ TTCCTGATGGGCATCATCACAGGGGCAGGAATTCAGGGTATATTTATGCTAG
____________________________________________________________
consensus TTCCCAATTTCCTGATGGGCATCATCACAGGGGCAGGAATTCAGGGTATATTTATGCTAG
. : . : . : . : . : . :
rJMSF003N17+ TCTCCGGATACTTCAGACTCCCTAATGACATCCCAAAGCCTTTCTGGCGTTACCCAATGT
rJMSF036P18+ TCTCCGGATACTTCAGACTCCCTAATGACATCCCAAAGCCTTTCTGGCGTTACCCAATGT
rJMSF030M11+ TCTCCGGATACTTCAGACTCCCTAATGACATCCCAAAGCCTTTCTGGCGTTACCCAATGT
rJMSF049H10+ TCTCNGGATACTTCAGACTCCCTAATGACATCCCAAAGCCTTTCTGGCGTTACCCAATGT
____________________________________________________________
consensus TCTCCGGATACTTCAGACTCCCTAATGACATCCCAAAGCCTTTCTGGCGTTACCCAATGT
. : . : . : . : . : . :
rJMSF003N17+ CCTACATCAGCTTCCACTTCTGGGCTTTACAGGGACAGTACCAGAATGATCTGAAGGGAT
rJMSF036P18+ CCTACATCAGCTTCCACTTCTGGGCTTTACAGGGACAGTACCAGAATGATCTGAAGGGAT
rJMSF030M11+ CCTACATCAGCTTCCACTTCTGGGCTTTACAGGGACAGTACCAGAATGATCTGAAGGGAT
rJMSF049H10+ CCTACATCAGCTTCCACTTCTGGGCTTTACAGGGACAGTACCAGAATGATCTGAAGGGAT
____________________________________________________________
consensus CCTACATCAGCTTCCACTTCTGGGCTTTACAGGGACAGTACCAGAATGATCTGAAGGGAT
. : . : . : . : . : . :
rJMSF003N17+ TAGTGTTCGACAACCAGTCACCAGATCTGCCCAAAATCCCTGGCGAGTTCATCCTGGAAA
rJMSF036P18+ TAGTGTTCGACAACCAGTCACCAGATCTGCCCAAAATCCCTGGCGAGTTCATCCTGGAAA
rJMSF030M11+ TAGTGTTCGACAACCAGTCACCAGATCTGCCCAAAATCCCTGGCGAGTTCATCCTGGAAA
JMFN017D20- CCTGGCGAGTTCATCCTGGAAA
rJMSF049H10+ TAGTGTTCGACAACCAGTCACCAGATCTGCCCAAAATCCCTGGCGAGTTCATCCTGGAAA
____________________________________________________________
consensus TAGTGTTCGACAACCAGTCACCAGATCTGCCCAAAATCCCTGGCGAGTTCATCCTGGAAA
. : . : . : . : . : . :
rJMSF003N17+ ACATATTCCAGATCGACGTGAACAGATCAAAATGGGTGGACCTCAGCGTTCTGTTCTGCA
rJMSF036P18+ ACATATTCCAGATCGACGTGAACAGATCAAAATGGGTGGACCTCAGCGTTCTGTTCTGCA
rJMSF030M11+ ACATATTCCAGATCGACGTGAACAGATCAAAATGGGTGGACCTCAGCGTTCTGTTCTGCA
JMFN017D20- ACATATTCCAGATCGACGTGAACAGATCAAAATGGGTGGACCTCAGCGTTCTGTTCTGCA
rJMSF049H10+ ACATATTCCAGATCGACGTGAACAGATCAAAATGGGTGGACCTCAGCGTTCTGTTCTGCA
____________________________________________________________
consensus ACATATTCCAGATCGACGTGAACAGATCAAAATGGGTGGACCTCAGCGTTCTGTTCTGCA
. : . : . : . : . : . :
rJMSF003N17+ TGATCATCATCTACCGCCTCATATTCTTCATTGTAATCAAGATAAACGAGGATGTGACGC
rJMSF036P18+ TGATCATCATCTACCGCCTCATATTCTTCATTGTAATCAAGATAAACGAGGATGTGACGC
rJMSF030M11+ TGATCATCATCTACCGCCTCATATTCTTCATTGTAATCAAGATAAACGAGGATGTGACGC
JMFN017D20- TGATCATCATCTACCGCCTCATATTCTTCATTGTAATCAAGATAAACGAGGATGTGACGC
rJMSF049H10+ TGATCATCATCTACCGCCTCATATTCTTCATTGTAATCAAGATAAACGAGGATGTGACGC
____________________________________________________________
consensus TGATCATCATCTACCGCCTCATATTCTTCATTGTAATCAAGATAAACGAGGATGTGACGC
. : . : . : . : . : . :
rJMSF003N17+ CGTGGATCCGAGGATACATAGCCAGGAGGAGAATGCAGCAAAAGAATGGGAATCAAACAA
rJMSF036P18+ CGTGGATCCGAGGATACATAGCCAGGAGGAGAATGCAGCAAAAGAATGGGAATCAAACAA
rJMSF030M11+ CGTGGATCCGAGGATACATAGCCAGGAGGAGAATGCAGCAAAAGAATGGGAATCAAACAA
JMFN017D20- CGTGGATCCGAGGATACATAGCCAGGAGGAGAATGCAGCAAAAGAATGGGAATCAAACAA
rJMSF049H10+ CGTGGATCCGAGGATACATAGCCAGGAGGAGAATGCAGCAAAAGAATGGGAATCAAACAA
____________________________________________________________
consensus CGTGGATCCGAGGATACATAGCCAGGAGGAGAATGCAGCAAAAGAATGGGAATCAAACAA
. : . : . : . : . : . :
rJMSF003N17+ CTACGGTTGCGCCGTTTGGTCTCACCCAGTCCCCTTCATTGAGGTCCTACGCTACCGGAC
rJMSF036P18+ CTACGGTTGCGCCGTTTGGTCTCACCCAGTCCCCTTCATTGAGGTCCTACGCTACCGGAC
rJMSF030M11+ CTACGGTTGCGCCGTTTGGTCTCACCCAGTCCCCTTCATTGAGGTCCTACGCTACCGGAC
JMFN017D20- CTACGGTTGCGCCGTTTGGTCTCACCCAGTCCCCTTCATTGAGGTCCTACGCTACCGGAC
rJMSF049H10+ CTACGGTTGCGCCGTTTGGTCTCACCCAGTCCCCTTCATTGAGGTCCTACGCTACCGGAC
____________________________________________________________
consensus CTACGGTTGCGCCGTTTGGTCTCACCCAGTCCCCTTCATTGAGGTCCTACGCTACCGGAC
. : . : . : . : . : . :
rJMSF003N17+ CTGCCAAGAAGTAGATCAAAACAAGAATCATCAATCATAGGTTACAACCTGTCAAGCCTT
rJMSF036P18+ CTGCCAAGAAGTAGATCAAAACAAGAATCATCAATCATAGGTTACAACCTGTCAAGCCTT
rJMSF030M11+ CTGCCAAGAAGTAGATCAAAACAAGAATCATCAATCATAGGTTACAACCTGTCAAGCCTT
JMFN017D20- CTGCCAAGAAGTAGATCAAAACAAGAATCATCAATCATAGGTTACAACCTGTCAAGCCTT
rJMSF049H10+ CTGCCAAGAAGTAGATCAAAACAAGAATCATCAATCATAGGTTACAACCTGTCAAGCCTT
____________________________________________________________
consensus CTGCCAAGAAGTAGATCAAAACAAGAATCATCAATCATAGGTTACAACCTGTCAAGCCTT
. : . : . : . : . : . :
rJMSF003N17+ TGCATACTTGTAATATGTAACAAATTAAATACGAGAGAGAGATGGTGTTTACTCTACCGG
rJMSF036P18+ TGCATACTTGTAATATGTAACAAATTAAATACGAGAGAGAGATGGTGTTTACTCTA-CGG
rJMSF030M11+ TGCATACTTGTAATATGTAACAAATTAAATACGAGAGAGAGATGGTGTTTACTCTA-CGG
JMFN017D20- TGCATACTTGTAATATGTAACAAATTAAATACGAGAGAGAGATGGTGTTTACTCTA-CGG
rJMSF049H10+ TGCATACTTGTAATATGTAACAAATTAAATACGAGAGAGAGATGGTGTTTACTCTA-CGG
____________________________________________________________
consensus TGCATACTTGTAATATGTAACAAATTAAATACGAGAGAGAGATGGTGTTTACTCTA-CGG
. : . : . : . : . : . :
rJMSF003N17+ TAATTATTATAAGTTCTTGCTC
rJMSF036P18+ TAATTATTATAAGTTCTTGCTC
rJMSF030M11+ TAATTATTATAAGTTCTTGCTCTAAATGCATGGAGTTGGCTCTTTCTTAGGCCAATTCAT
JMFN017D20- TAATTATTATAAGTTCTTGCTCTAAATGCATGGAGTTGGCTCTTTCTTAGGCCAATTCAT
rJMSF049H10+ TAATTATTATAAGTTCTTGCTCTAAATGCATGGAGTTGGCTCTTTCTTAGGCCAATTCAT
____________________________________________________________
consensus TAATTATTATAAGTTCTTGCTCTAAATGCATGGAGTTGGCTCTTTCTTAGGCCAATTCAT
. : . : . : . : . : . :
rJMSF030M11+ TCATTCATTACGTACTCCTTATCAAATTGGTGAAACAATTATTTCTTACTTT
JMFN017D20- TCATTCATTACGTACTCCTTATCAAATTGGTGAAACAATTATTTCTTACTTT
rJMSF049H10+ TCATTCATTACGTACTCCTTATCAAATTGGTGAAACAATTATTTCTTACTTTGAGTACTG
____________________________________________________________
consensus TCATTCATTACGTACTCCTTATCAAATTGGTGAAACAATTATTTCTTACTTTGAGTACTG