Contig 003004:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+                                                                ANTTTA
                      ____________________________________________________________
consensus                                                                   ANTTTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          GTTGGCTATTGTGTGGATAAAGGTGAACGGATGTTGATCTATGAATTCATGAGCAATGGA
                      ____________________________________________________________
consensus             GTTGGCTATTGTGTGGATAAAGGTGAACGGATGTTGATCTATGAATTCATGAGCAATGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          AGTTTAGCGAACCTTTTATATAGCACAGAACGAACTTTGAGTTGGGAAGGAAGACTGCAA
                      ____________________________________________________________
consensus             AGTTTAGCGAACCTTTTATATAGCACAGAACGAACTTTGAGTTGGGAAGGAAGACTGCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          ATTGCTCTTGATATTTCACATGGCATCGAGTATCTTCATGATGGGGCAGTGCCACCAGTG
                      ____________________________________________________________
consensus             ATTGCTCTTGATATTTCACATGGCATCGAGTATCTTCATGATGGGGCAGTGCCACCAGTG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          ATACATCGAGATTTGAAGTCTGCTAATGTATTGCTCGATCATGCTATGAGAGCTAAGGTT
                      ____________________________________________________________
consensus             ATACATCGAGATTTGAAGTCTGCTAATGTATTGCTCGATCATGCTATGAGAGCTAAGGTT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          GCTGATTTTGGGCTTTCAAGGGAAGAAGTCAAGGATGGCAGCAATTCAGGTCTTAAAGGC
                      ____________________________________________________________
consensus             GCTGATTTTGGGCTTTCAAGGGAAGAAGTCAAGGATGGCAGCAATTCAGGTCTTAAAGGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          ACATTTGGCTACATAGATCCTGCATATATATCCACAAACAAATTTACCACGAAGAGCGAC
                      ____________________________________________________________
consensus             ACATTTGGCTACATAGATCCTGCATATATATCCACAAACAAATTTACCACGAAGAGCGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          ATTTATAGCTTTGGCGTTATCCTCTTCGAGCTCATCACAGCTATCCATCCACACCAGAAC
rJMSF048M17+                                      AGCTCATCACAGCTATCCATCCACACCAGAAC
rJMSF049A23+                                      AGCTCATCACAGCTATCCATCCACACCAGAAC
                      ____________________________________________________________
consensus             ATTTATAGCTTTGGCGTTATCCTCTTCGAGCTCATCACAGCTATCCATCCACACCAGAAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          TTGATGGAATACGTGAATCTCGCTGCTATGAGTCCAGACGGCGTCGATGAGATTCTTGAC
rJMSF048M17+          TTGATGGAATACGTGAATCTCGCTGCTATGAGTCCAGACGGCGTCGATGAGATTCTTGAC
rJMSF049A23+          TTGATGGAATACGTGAATCTCGCTGCTATGAGTCCAGACGGCGTCGATGAGATTCTTGAC
                      ____________________________________________________________
consensus             TTGATGGAATACGTGAATCTCGCTGCTATGAGTCCAGACGGCGTCGATGAGATTCTTGAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          AAGCAACTCGTCGGGACATGCAATGTGGAAGAAGTAAGGAACCTCGCTGCAATTGCCCAC
rJMSF048M17+          AAGCAACTCGTCGGGACATGCAATGTGGAAGAAGTAAGGAACCTCGCTGCAATTGCCCAC
rJMSF049A23+          AAGCAACTCGTCGGGACATGCAATGTGGAAGAAGTAAGGAACCTCGCTGCAATTGCCCAC
                      ____________________________________________________________
consensus             AAGCAACTCGTCGGGACATGCAATGTGGAAGAAGTAAGGAACCTCGCTGCAATTGCCCAC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          AAGTGCTTGCACAAAACTCCGAGAAAACGACCCCCCATAGGAGACGTTTCCCACGCTATA
rJMSF048M17+          AAGTGCTTGCACAAAACTCCGAGAAAACGACCCCCCATAGGAGACGTTTCCCACGCTATA
rJMSF049A23+          AAGTGCTTGCACAAAACTCCGAGAAAACGACCCCCCATAGGAGACGTTTCCCACGCTATA
                      ____________________________________________________________
consensus             AAGTGCTTGCACAAAACTCCGAGAAAACGACCCCCCATAGGAGACGTTTCCCACGCTATA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          CTAAAGATCAAACAGAGACACACCGTGAAGAAAGATACCTCGTCTTTCGCCCAAGATGAT
rJMSF048M17+          CTAAAGATCAAACAGAGACACACCGTGAAGAAAGATACCTCGTCTTTCGCCCAAGATGAT
rJMSF049A23+          CTAAAGATCAAACAGAGACACACCGTGAAGAAAGATACCTCGTCTTTCGCCCAAGATGAT
                      ____________________________________________________________
consensus             CTAAAGATCAAACAGAGACACACCGTGAAGAAAGATACCTCGTCTTTCGCCCAAGATGAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          TTTTCAAGAATGTCGAGTATTATTGAGGTTCAGGAATGAGGAAGCTGAACTATGAAAACA
rJMSF048M17+          TTTTCAAGAATGTCGAGTATTATTGAGATTCAGGAATGAGGAAGCTGAACTATGAAAACA
rJMSF049A23+          TTTTCAAGAATGTCGAGTATTATTGAGATTCAGGAATGAGGAAGCTGAACTATGAAAACA
                      ____________________________________________________________
consensus             TTTTCAAGAATGTCGAGTATTATTGAGATTCAGGAATGAGGAAGCTGAACTATGAAAACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          TGGCCAGCGTAAACGTTAGTCCAGATCGATGACTGTTAGCATTATTCAACCATATCCTTC
rJMSF048M17+          TGGCCAGCGTAAACGTTAGTCCAGATCGATGACTGTTAGCATTATTCAACCATATCCTTC
rJMSF049A23+          TGGCCAGCGTAAACGTTAGTCCAGATCGATGACTGTTAGCATTATTCAACCATATCCTTC
                      ____________________________________________________________
consensus             TGGCCAGCGTAAACGTTAGTCCAGATCGATGACTGTTAGCATTATTCAACCATATCCTTC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          CCTTTTTGCAAGCTTGAGTGCAGAGATATGGTTGTGTTCATCTTCTTCAGGCTCATTGGA
rJMSF048M17+          CCTTTTTGCAAGCTTGAGTGCAGAGATATGGTTGTGTTCATCTTCTTTAGGCTCATTGGA
rJMSF049A23+          CCTTTTTGCAAGCTTGAGTGCAGAGATATGGTTGTGTTCATCTTCTTTAGGCTCATTGGA
                      ____________________________________________________________
consensus             CCTTTTTGCAAGCTTGAGTGCAGAGATATGGTTGTGTTCATCTTCTTTAGGCTCATTGGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          GTTTGCATTTCTTGAGAGGTTTACACAATAGATAGAGTATTGAGTTTTCAGTGAAGTAGT
rJMSF048M17+          GTTTGCATTTCTTGAGAGGTTTACACAATAGATAGAGTATTGAGTTTTCAGTGAAGTAGT
rJMSF049A23+          GTTTGCATTTCTTGAGAGGTTTACACAATAGATAGAGTATTGAGTTTTCAGTGAAGTAGT
                      ____________________________________________________________
consensus             GTTTGCATTTCTTGAGAGGTTTACACAATAGATAGAGTATTGAGTTTTCAGTGAAGTAGT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF052K15+          GACTTCAGTGTCATAAAGC                                         
rJMSF048M17+          GACTTCAGTGTCATAAAGCAGTAGGAAATCCAAGAAATAGATATATAATTTAAAGTTGAG
rJMSF049A23+          GACTTCAGTGTCATAAAGCAGTAGGAAATCCAAGAAATAGATATATAATTTAAAGTTGAG
                      ____________________________________________________________
consensus             GACTTCAGTGTCATAAAGCAGTAGGAAATCCAAGAAATAGATATATAATTTAAAGTTGAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048M17+          AATGTCAATTATCTTATTTTTTACCAATATATTAACTGTTCGCTTACCGATTGTTTTATT
rJMSF049A23+          AATGTCAATTATCTTATTTTTTACCAATATATTAACTGTTCGCTTACCGATTGTTTTATT
                      ____________________________________________________________
consensus             AATGTCAATTATCTTATTTTTTACCAATATATTAACTGTTCGCTTACCGATTGTTTTATT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF048M17+          AAACTTTAGCATGGATCTAACTTCGATATCAAGTCTAATATGATAGTTGTGTCACACATT
rJMSF049A23+          AAACTTTAGCATGGATCTAACTTCGATATCAAGTCTAATATGATAGTTGTGTCACACATT
                      ____________________________________________________________
consensus             AAACTTTAGCATGGATCTAACTTCGATATCAAGTCTAATATGATAGTTGTGTCACACATT