Contig 003000:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF031M04Sequence683000977 (4)ref|XP_009793378.1|55.1PREDICTED: uncharacterized protein LOC104240265 [Nicotiana sylvestris]671003000 (3)
JMSF033N07Sequence651000977 (4)ref|XP_009793378.1|55.1PREDICTED: uncharacterized protein LOC104240265 [Nicotiana sylvestris]728003000 (3)
JMSF048M08Sequence670000977 (4)gb|KJB33302.1|2e-09hypothetical protein B456_006G006100 [Gossypium raimondii]781003000 (3)

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF031M04+ ATAATTCATTCTTGCTTAAAGAAAATGCTGCATA
                      ____________________________________________________________
consensus ATAATTCATTCTTGCTTAAAGAAAATGCTGCATA
 
. : . : . : . : . : . :
rJMSF031M04+ TTTTTCTTGCTCTTCCACAGCTTTGGATTTCTTTTTCTTGCTCTTCTTTGTGGAAACTTG
rJMSF033N07+ AGCTTTGGATTTCNTTTTCTTGCTCTTCTTTGTGGAAACTTG
rJMSF048M08+ AGCTTTGGATTTCTTTTTCTTGCTCTTCTTTGTGGAAACTTG
                      ____________________________________________________________
consensus TTTTTCTTGCTCTTCCACAGCTTTGGATTTCTTTTTCTTGCTCTTCTTTGTGGAAACTTG
 
. : . : . : . : . : . :
rJMSF031M04+ GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
rJMSF033N07+ GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
rJMSF048M08+ GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
                      ____________________________________________________________
consensus GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
 
. : . : . : . : . : . :
rJMSF031M04+ ACTGAAATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
rJMSF033N07+ ACTGAGATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
rJMSF048M08+ ACTGAAATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
                      ____________________________________________________________
consensus ACTGAAATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
 
. : . : . : . : . : . :
rJMSF031M04+ CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
rJMSF033N07+ CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
rJMSF048M08+ CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
                      ____________________________________________________________
consensus CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
 
. : . : . : . : . : . :
rJMSF031M04+ ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
rJMSF033N07+ ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
rJMSF048M08+ ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
                      ____________________________________________________________
consensus ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
 
. : . : . : . : . : . :
rJMSF031M04+ CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
rJMSF033N07+ CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
rJMSF048M08+ CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
                      ____________________________________________________________
consensus CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
 
. : . : . : . : . : . :
rJMSF031M04+ AAGCAAATTGAAAACAGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
rJMSF033N07+ A--------------AGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
rJMSF048M08+ A--------------AGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
                      ____________________________________________________________
consensus A--------------AGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
 
. : . : . : . : . : . :
rJMSF031M04+ GTGACAAAAGTTGAGCAACAAATAATAAAG
rJMSF033N07+ GTGACAAAAGTTGAGCAACAAATAATAAAGATCACTGACAGAGGCAGCAGGCAAGTAGTA
rJMSF048M08+ GTGACAAAAGTTGAGCAACAAATAATAA-----------AGAGGCAGCAGGCAAGTAGTA
                      ____________________________________________________________
consensus GTGACAAAAGTTGAGCAACAAATAATAAAGATCACTGACAGAGGCAGCAGGCAAGTAGTA
 
. : . : . : . : . : . :
rJMSF033N07+ GAAACATATGAGAAGAAGAAAGAAGAAAGTAGCACAAAAGATATCTAAGCTGCCTAATAG
rJMSF048M08+ GAAACATATGAGAAGAAGAAAGAAGAAAGTAGCACAAAAGATATCTAAGCTGCCTAATAG
                      ____________________________________________________________
consensus GAAACATATGAGAAGAAGAAAGAAGAAAGTAGCACAAAAGATATCTAAGCTGCCTAATAG
 
. : . : . : . : . : . :
rJMSF033N07+ TGAAAATGCCTAATCTTCAGAAGGACAATGGACACTGATGATGGAACAGGCTACTTTCAT
rJMSF048M08+ TGAAAATGCCTAATCTTCAGAAGGACAATGGACACTGATGATGGAACAGGCTACTTTCAT
                      ____________________________________________________________
consensus TGAAAATGCCTAATCTTCAGAAGGACAATGGACACTGATGATGGAACAGGCTACTTTCAT
 
. : . : . : . : . : . :
rJMSF033N07+ ACTGCAAATGTGTCCTGGGAACTTGTGTCTTTCGTGTCTATACATTTAGAATTAAGAGAC
rJMSF048M08+ ACTGCAAATGTGTCCTGGGAACTTGTGTCTTTCGTGTCTATACATTTAGAATTAAGAGAC
                      ____________________________________________________________
consensus ACTGCAAATGTGTCCTGGGAACTTGTGTCTTTCGTGTCTATACATTTAGAATTAAGAGAC
 
. : . : . : . : . : . :
rJMSF033N07+ TAATAGAAATGTCATATTTTGACTTGTTTTAATTTTCAATTGTATATCGATGAAACGAAT
rJMSF048M08+ TAATAGAAATGTCATATTTTGACTTGTTTTAATTTTCAATTGTATATCGATGAAATGAAT
                      ____________________________________________________________
consensus TAATAGAAATGTCATATTTTGACTTGTTTTAATTTTCAATTGTATATCGATGAAATGAAT