Contig 003000:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


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rJMSF031M04+                                    ATAATTCATTCTTGCTTAAAGAAAATGCTGCATA
                      ____________________________________________________________
consensus                                       ATAATTCATTCTTGCTTAAAGAAAATGCTGCATA
 
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rJMSF031M04+          TTTTTCTTGCTCTTCCACAGCTTTGGATTTCTTTTTCTTGCTCTTCTTTGTGGAAACTTG
rJMSF033N07+                            AGCTTTGGATTTCNTTTTCTTGCTCTTCTTTGTGGAAACTTG
rJMSF048M08+                            AGCTTTGGATTTCTTTTTCTTGCTCTTCTTTGTGGAAACTTG
                      ____________________________________________________________
consensus             TTTTTCTTGCTCTTCCACAGCTTTGGATTTCTTTTTCTTGCTCTTCTTTGTGGAAACTTG
 
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rJMSF031M04+          GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
rJMSF033N07+          GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
rJMSF048M08+          GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
                      ____________________________________________________________
consensus             GCTGGGTGCTGTATCAACATCCATAGACTCATCTGCATCTCCAGTAGAGATTGATACCAA
 
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rJMSF031M04+          ACTGAAATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
rJMSF033N07+          ACTGAGATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
rJMSF048M08+          ACTGAAATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
                      ____________________________________________________________
consensus             ACTGAAATAGTTGTTTTATATGGGCTAATATACCGGAACAATTGCAAATGGATGTACAAC
 
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rJMSF031M04+          CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
rJMSF033N07+          CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
rJMSF048M08+          CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
                      ____________________________________________________________
consensus             CGATTGATGCCAAGAAAGAGGGGGTACACTGATGAGTTCTTAGCAGGTATTTTTAAAGAT
 
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rJMSF031M04+          ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
rJMSF033N07+          ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
rJMSF048M08+          ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
                      ____________________________________________________________
consensus             ATTTTCTTAATCAGACTAAAGAGCAAGATCAAGGATCTGGAGTCAGAAAATGAGCTTCTC
 
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rJMSF031M04+          CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
rJMSF033N07+          CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
rJMSF048M08+          CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
                      ____________________________________________________________
consensus             CTCGCTCAAAGAGTAGTTGTAGAGCATGTAGCAAACTCAGGCCAAGCAGATTCAGCATTA
 
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rJMSF031M04+          AAGCAAATTGAAAACAGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
rJMSF033N07+          A--------------AGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
rJMSF048M08+          A--------------AGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
                      ____________________________________________________________
consensus             A--------------AGATGCCAAGTTCATGAAGATGTGAAGACAGAGGAAGTGCAACAA
 
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rJMSF031M04+          GTGACAAAAGTTGAGCAACAAATAATAAAG                              
rJMSF033N07+          GTGACAAAAGTTGAGCAACAAATAATAAAGATCACTGACAGAGGCAGCAGGCAAGTAGTA
rJMSF048M08+          GTGACAAAAGTTGAGCAACAAATAATAA-----------AGAGGCAGCAGGCAAGTAGTA
                      ____________________________________________________________
consensus             GTGACAAAAGTTGAGCAACAAATAATAAAGATCACTGACAGAGGCAGCAGGCAAGTAGTA
 
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rJMSF033N07+          GAAACATATGAGAAGAAGAAAGAAGAAAGTAGCACAAAAGATATCTAAGCTGCCTAATAG
rJMSF048M08+          GAAACATATGAGAAGAAGAAAGAAGAAAGTAGCACAAAAGATATCTAAGCTGCCTAATAG
                      ____________________________________________________________
consensus             GAAACATATGAGAAGAAGAAAGAAGAAAGTAGCACAAAAGATATCTAAGCTGCCTAATAG
 
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rJMSF033N07+          TGAAAATGCCTAATCTTCAGAAGGACAATGGACACTGATGATGGAACAGGCTACTTTCAT
rJMSF048M08+          TGAAAATGCCTAATCTTCAGAAGGACAATGGACACTGATGATGGAACAGGCTACTTTCAT
                      ____________________________________________________________
consensus             TGAAAATGCCTAATCTTCAGAAGGACAATGGACACTGATGATGGAACAGGCTACTTTCAT
 
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rJMSF033N07+          ACTGCAAATGTGTCCTGGGAACTTGTGTCTTTCGTGTCTATACATTTAGAATTAAGAGAC
rJMSF048M08+          ACTGCAAATGTGTCCTGGGAACTTGTGTCTTTCGTGTCTATACATTTAGAATTAAGAGAC
                      ____________________________________________________________
consensus             ACTGCAAATGTGTCCTGGGAACTTGTGTCTTTCGTGTCTATACATTTAGAATTAAGAGAC
 
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rJMSF033N07+          TAATAGAAATGTCATATTTTGACTTGTTTTAATTTTCAATTGTATATCGATGAAACGAAT
rJMSF048M08+          TAATAGAAATGTCATATTTTGACTTGTTTTAATTTTCAATTGTATATCGATGAAATGAAT
                      ____________________________________________________________
consensus             TAATAGAAATGTCATATTTTGACTTGTTTTAATTTTCAATTGTATATCGATGAAATGAAT